si:ch73-314g15.3 (LOC106562630)


Basic Information

Item Value
gene id si:ch73-314g15.3
gene name LOC106562630
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 82331797 ~ 82343201 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981164.1
cggagtaggctgtcattgtaaataagaatttgtttttaactgacttgcctagtaattTTGAGATACAATGTCGTACAGTAGATCATATCAATCATATTATTTTCTAGCCCAAAGGCCGGCAGATGGCGATATTGAGTTGTTTCATGATAATGTCCAAAGGCATTGTTTGCAGCTGGCTATAAGCCTGTAGCCGGTTCGTACataaaacattctccattcaggctgcaaaggtGTCGATTTCCTCCTTAATTTGATTTATTGGCGATAATGCCACAGGGAAAAAAACAGGGAAAGTATGTGTACTTTATGAAACACAATTTTGCACCACCATGCTAGGGTGGCTAATGCATGATCACTCATGTTGGAAACTCTGAAATGTTACACTTGCTAACCTAGGTGGAAGAATCAGATTCTGAATTTCCCTCTTGGGTTTGGACCAGAATCAACCAATAGGAAGCTTTACGCAAATAACTTTAGTTCACTTTAAGTCACAGGTCCCGAGTTTCCGACATGACATGAACACAGCATAATACCTAGGAACGCTAGTCCCAGATGTGCATATCGCCTTTAGCCATTTAGGCTGCAGCTGTCTGTTGTTTACCGCTGGCTGAAAAAGGGGTGTAAGTAGAATCAACCAATAGGAagcttatttatatatatatatatttttttaatatatttttttatatatttttttattttattattattatattttttttaaatcaaacctTCTCACCATTAAATCAAGTTAAGGAGGAAATTGACACCCTTGCAGCGtgaatggagaatgttttatGTACAAACCTGTCCATGGGGGACACGAGTGTATAGCTGGCTGCATCGTCATCTGCTGGCCTTGAGGCTGTACTCTGAGGATGGTGAACACATTGTCCTGGTTCACACAGAAGATGACAGATTCTGGGCTATGGATTCATCCTGTCCCCATGAAGGAGGCCCTCTTGACCTCGGTGACATTGAGGACCTGGGAGATGGGAAGAGGGTTCTGGTCTGTCCCTGGCATCACTTTGACTTCTGCCTGGAGACAGGTGCCTCTTCCATGGGactacagAACCAGGTGTATGAGGTCAGAGTTGTCCAAGACATGATTTATATCAACACACAGAATGAGCTGTGTCTAAGTCCCATCCCAGAGACAGACACATCTAATGGCAAGTTGTCAGTAGATGCTGTCGAGCCATCACCCTCTGAGGACACACTGTGCTTCTGGGCTACAAAGATCCTCTGCACACCAGACCCCAAAGAGAAGGTAGCCATGACACTGGAGGTCCAGGAGAGGTGGAACAGTGGGGAGATAACAGAGGTGGGTCAGGCTACACCACCTGTCCAGCCAAGCAGGAAGGAGAACCTGACCGTACTGCAGCCGGGCAAAATCAAGCGTGGCAAAGGTGGCACACAGGCTAGCAGGATAGCCCTCCTCCACTCCCTGGCTAACATAGAGCAGTGGGCTATAGACCTGTCCTGGGACGTCATCGCTCGCTTCTCATCGGTCAGACTGGACACTGGAGAGCCCCTGCCCCGCCAGTTCTTCAGCGACTTTGTCAAAGTGGCCGGAGACGAGGCCAAGCATTATCACTTACTAGAGACGAGGATCACAGAACTCGACAGCTTCTTTGGTGCGTTACCTGTTCATAATGGACTGTGGCAGTCAGCAACGGATACGTCCCACAACCTTCTGGCGAGGCTAGCCATTGTGCATATGGTACATGAAGCCAGGGGCCTAGATGTGCACCCCCAGACCCTCTCCCGCTTCGCTGCCCAGGGGGACTGCAGCTCTGTGGAGGTGCTGGAGGTTATCTACCGGGATGAGATCACTCACGTGGCCGCCGGGCTCCGCTGGTTCACCTACATCTGTTCACAGGAAGAACGGGATTGCTTATCTACTTTCCATGACTTGGTGAAGCAGCACTTCAAAGGTTACCTGAAGCCTCCTTTTAACACAGAGGGTAGGAAGACAGCAGGGATGACAGAGGAGTGGTACGTGCCTCTTGTAAAGCCTCCCAGTTAACAGACAATGCCCCCGAGACCAGCATGCTGTGACGAACACAGTTGTAAAGCCTCACAGTTAACAGACAACGTCCCCGAGACCAGCATGCTGTGACGAACACAGCTGCTGCGTCCCAGCGGGTGGAGGAAGCAGATTCACACCAAATCTCATAAAACCTGGATGAAGGCCAAACTGTTACTATTATAAAGGTTTAAACTCAAACATGTCAGTAGCCGTATCAATGTGGCATTGCAATCTAATATCTGAGCCCTGATGACGTGGCATTCGATCATTGGTTAATTTGTGCAGCGCGACTGCAATGTAGTCGGCCTGGAACGGCACCATTT
>XM_036981163.1
AACAATTTGATTTTGTAGTTCAGAAGAAAACAATTCTGCCACACATCGGCATGGACGGCAGCAGTAGCAAGCTAGTTATGCACAACATTACTCTTACTACTATTTTCTGCATCGTATGTTTTAAATGGATCCCTTCGAGGAAAATTTAGTCGCTGCATTAAGAGAAATTGTCAAAGACGGAAACTGGCATTGTGTAGGAAAGAAGTGTGATTTTGACTCACCATGCACAAAGCTGTACTCTGAGGATGGTGAACACATTGTCCTGGTTCACACAGAAGATGACAGATTCTGGGCTATGGATTCATCCTGTCCCCATGAAGGAGGCCCTCTTGACCTCGGTGACATTGAGGACCTGGGAGATGGGAAGAGGGTTCTGGTCTGTCCCTGGCATCACTTTGACTTCTGCCTGGAGACAGGTGCCTCTTCCATGGGactacagAACCAGGTGTATGAGGTCAGAGTTGTCCAAGACATGATTTATATCAACACACAGAATGAGCTGTGTCTAAGTCCCATCCCAGAGACAGACACATCTAATGGCAAGTTGTCAGTAGATGCTGTCGAGCCATCACCCTCTGAGGACACACTGTGCTTCTGGGCTACAAAGATCCTCTGCACACCAGACCCCAAAGAGAAGGTAGCCATGACACTGGAGGTCCAGGAGAGGTGGAACAGTGGGGAGATAACAGAGGTGGGTCAGGCTACACCACCTGTCCAGCCAAGCAGGAAGGAGAACCTGACCGTACTGCAGCCGGGCAAAATCAAGCGTGGCAAAGGTGGCACACAGGCTAGCAGGATAGCCCTCCTCCACTCCCTGGCTAACATAGAGCAGTGGGCTATAGACCTGTCCTGGGACGTCATCGCTCGCTTCTCATCGGTCAGACTGGACACTGGAGAGCCCCTGCCCCGCCAGTTCTTCAGCGACTTTGTCAAAGTGGCCGGAGACGAGGCCAAGCATTATCACTTACTAGAGACGAGGATCACAGAACTCGACAGCTTCTTTGGACTGTGGCAGTCAGCAACGGATACGTCCCACAACCTTCTGGCGAGGCTAGCCATTGTGCATATGGTACATGAAGCCAGGGGCCTAGATGTGCACCCCCAGACCCTCTCCCGCTTCGCTGCCCAGGGGGACTGCAGCTCTGTGGAGGTGCTGGAGGTTATCTACCGGGATGAGATCACTCACGTGGCCGCCGGGCTCCGCTGGTTCACCTACATCTGTTCACAGGAAGAACGGGATTGCTTATCTACTTTCCATGACTTGGTGAAGCAGCACTTCAAAGGTTACCTGAAGCCTCCTTTTAACACAGAGGGTAGGAAGACAGCAGGGATGACAGAGGAGTGGTACGTGCCTCTTGTAAAGCCTCCCAGTTAACAGACAATGCCCCCGAGACCAGCATGCTGTGACGAACACAGTTGTAAAGCCTCACAGTTAACAGACAACGTCCCCGAGACCAGCATGCTGTGACGAACACAGCTGCTGCGTCCCAGCGGGTGGAGGAAGCAGATTCACACCAAATCTCATAAAACCTGGATGAAGGCCAAACTGTTACTATTATAAAGGTTTAAACTCAAACATGTCAGTAGCCGTATCAATGTGGCATTGCAATCTAATATCTGAGCCCTGATGACGTGGCATTCGATCATTGGTTAATTTGTGCAGCGCGACTGCAATGTAGTCGGCCTGGAACGGCACCATTT
>XM_036981162.1
CAATTTGATTTTGTAGTTCAGAAGAAAACAATTCTGCCACACATCGGCATGGACGGCAGCAGTAGCAAGCTAGTTATGCACAACATTACTCTTACTACTATTTTCTGCATCGTATGTTTTAAATGGATCCCTTCGAGGAAAATTTAGTCGCTGCATTAAGAGAAATTGTCAAAGACGGAAACTGGCATTGTGTAGGAAAGAAGTGTGATTTTGACTCACCATGCACAAAGCTGTACTCTGAGGATGGTGAACACATTGTCCTGGTTCACACAGAAGATGACAGATTCTGGGCTATGGATTCATCCTGTCCCCATGAAGGAGGCCCTCTTGACCTCGGTGACATTGAGGACCTGGGAGATGGGAAGAGGGTTCTGGTCTGTCCCTGGCATCACTTTGACTTCTGCCTGGAGACAGGTGCCTCTTCCATGGGactacagAACCAGGTGTATGAGGTCAGAGTTGTCCAAGACATGATTTATATCAACACACAGAATGAGCTGTGTCTAAGTCCCATCCCAGAGACAGACACATCTAATGGCAAGTTGTCAGTAGATGCTGTCGAGCCATCACCCTCTGAGGACACACTGTGCTTCTGGGCTACAAAGATCCTCTGCACACCAGACCCCAAAGAGAAGGTAGCCATGACACTGGAGGTCCAGGAGAGGTGGAACAGTGGGGAGATAACAGAGGTGGGTCAGGCTACACCACCTGTCCAGCCAAGCAGGAAGGAGAACCTGACCGTACTGCAGCCGGGCAAAATCAAGCGTGGCAAAGGTGGCACACAGGCTAGCAGGATAGCCCTCCTCCACTCCCTGGCTAACATAGAGCAGTGGGCTATAGACCTGTCCTGGGACGTCATCGCTCGCTTCTCATCGGTCAGACTGGACACTGGAGAGCCCCTGCCCCGCCAGTTCTTCAGCGACTTTGTCAAAGTGGCCGGAGACGAGGCCAAGCATTATCACTTACTAGAGACGAGGATCACAGAACTCGACAGCTTCTTTGGTGCGTTACCTGTTCATAATGGACTGTGGCAGTCAGCAACGGATACGTCCCACAACCTTCTGGCGAGGCTAGCCATTGTGCATATGGTACATGAAGCCAGGGGCCTAGATGTGCACCCCCAGACCCTCTCCCGCTTCGCTGCCCAGGGGGACTGCAGCTCTGTGGAGGTGCTGGAGGTTATCTACCGGGATGAGATCACTCACGTGGCCGCCGGGCTCCGCTGGTTCACCTACATCTGTTCACAGGAAGAACGGGATTGCTTATCTACTTTCCATGACTTGGTGAAGCAGCACTTCAAAGGTTACCTGAAGCCTCCTTTTAACACAGAGGGTAGGAAGACAGCAGGGATGACAGAGGAGTGGTACGTGCCTCTTGTAAAGCCTCCCAGTTAACAGACAATGCCCCCGAGACCAGCATGCTGTGACGAACACAGTTGTAAAGCCTCACAGTTAACAGACAACGTCCCCGAGACCAGCATGCTGTGACGAACACAGCTGCTGCGTCCCAGCGGGTGGAGGAAGCAGATTCACACCAAATCTCATAAAACCTGGATGAAGGCCAAACTGTTACTATTATAAAGGTTTAAACTCAAACATGTCAGTAGCCGTATCAATGTGGCATTGCAATCTAATATCTGAGCCCTGATGACGTGGCATTCGATCATTGGTTAATTTGTGCAGCGCGACTGCAATGTAGTCGGCCTGGAACGGCACCATTT

Function

NR:

description
uncharacterized protein LOC110526679 isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981164.1 False 2355 mRNA 0.47 12 82331797 82343201
XM_036981163.1 False 1701 mRNA 0.51 12 82332917 82343201
XM_036981162.1 True 1720 mRNA 0.51 12 82332919 82343201

Neighbor

gene id symbol gene type direction distance location
LOC110526676 prc1 coding upstream 1424 82318325 ~ 82330373 (+)
vps33b LOC106562628 coding upstream 13671 82307544 ~ 82318126 (+)
LOC118965047 LOC106587629 coding upstream 55417 82276057 ~ 82276380 (+)
LOC110526669 hypk coding upstream 78489 82251852 ~ 82253308 (+)
LOC110526975 LOC106562727 coding upstream 133246 82128769 ~ 82198551 (+)
LOC110526684 LOC106587700 coding downstream 5608 82348809 ~ 82356001 (+)
LOC110526680 LOC106562633 coding downstream 19429 82362630 ~ 82365393 (+)
LOC110526689 spg21 coding downstream 70316 82413517 ~ 82420631 (+)
LOC118964942 NA coding downstream 128805 82472006 ~ 82476306 (+)
LOC118965048 LOC106587694 coding downstream 176053 82519254 ~ 82529744 (+)
G551804 NA non-coding upstream 67691 82263795 ~ 82264106 (+)
G551770 NA non-coding upstream 176457 82154628 ~ 82155340 (+)
G551752 NA non-coding upstream 216057 82115392 ~ 82115740 (+)
G551721 NA non-coding upstream 217441 82112035 ~ 82114356 (+)
G551684 NA non-coding upstream 423065 81908493 ~ 81908732 (+)
G551848 NA non-coding downstream 41716 82384917 ~ 82385727 (+)
G551851 NA non-coding downstream 46247 82389448 ~ 82391425 (+)
G551863 NA non-coding downstream 77764 82420965 ~ 82421244 (+)
G551864 NA non-coding downstream 78156 82421357 ~ 82421616 (+)
G551865 NA non-coding downstream 78424 82421625 ~ 82422120 (+)
G551805 NA other upstream 66048 82264969 ~ 82265749 (+)
LOC118964938 LOC106562620 other upstream 271382 82022011 ~ 82107452 (+)
LOC110506150 LOC106562517 other upstream 471539 81815343 ~ 81860498 (+)
LOC110526107 scg3 other upstream 865599 81435094 ~ 81466198 (+)
G551889 LOC106587688 other downstream 133717 82476918 ~ 82483802 (+)
LOC110526694 pcsk6 other downstream 246336 82532518 ~ 82627600 (+)
G551950 NA other downstream 247367 82590568 ~ 82593162 (+)
G552080 NA other downstream 571429 82914630 ~ 82915052 (+)
LOC110506168 efl1 other downstream 925968 83183382 ~ 83285498 (+)

Expression


Co-expression Network