LOC110512367 (LOC106562561)


Basic Information

Item Value
gene id LOC110512367
gene name LOC106562561
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 83173467 ~ 83183368 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981205.1
CAGTAGCGCGAGCTGTCCACTGAGGTATAAAAGAACGGAGCTGTCGGGCGGTGTTTGTGGGATTGCAGAAACACGCTAGCCTCCCCCCTCAAAGACATGAAACGGCTATGCATATGTGAGATCTGCAGCTGTGGACGCCATCGCTGCCcccaccaacccacagctctgtATGGAAAGCCCAATGTGACATGTGTCCTGACCGAGTACACAGAGAAGTACCCCGCCTATGGAAGATACAACCCGCCCCAGAGCCTGAAACCAAAGCCTGTTAACCACGGTGACCGGGGGAGAATGGATGGAACTACTACATTCAAGACTGACTTTATTCCCTACGTGGTGACTCGACGCCCAGGGAAACAGCAGGCGGAGTACAAACCCAAACCTGGAGACATAGATCTGGGGACCACCTACAAACAGGACTACAGCCTTTATGAGGTCCAACCCTTCGCCCCTTCCAGACCCAGCGAGAGGGTACGCACAACAGGGCACAAAATGGATACAGTGCCTACATACAAAGAGGATTTCCGACAGTGGGAGATGTGCAAGCGGGAGCTGAAGAAACCCGACCTGACCTACCACCCGCCAGACGCCAAGTTCGACGGCCACACCACCTTCCAGGACGACTTCCTCTCCCGAGGCCTTGCCCCCAGGGAGAGCTTCAAGCCTTCCAGTATCCCCAAAATGTCCGATACCCCCTTCGATGGGGTGACCAGTAACCAGCAGTGCTATGTGTCCCACCCTCTGGAGGCACGCTGGGTGAAGGCTCCAGAGCCCTATAAACCCAGTAGCCAGCCCCTACAAGACCTCACCACCAACCGAAGAGACTACCAGGGCCTGCCAGGACAGCTGCCCCAGAGCTATAAGCCTAACCCTGGAAAGGTGACGTCTGACGTTCCCTTTCAGAGCAGCACAGAGTTTAAGGAGCGTTTCCAGCAGTGGCCCGTGTCCCTGCCTCAGCTGCACAAGAGCCTGCAGTACGTCAGCCCCACAGAGCACATGGACATGAGCACCACGTCTGGTTCAGTCTACGTCCAACACAACATCCAGCCCTTCATCTCTGCCAAGCCCTTCAATCGGCCCACCAAGTCATCAGCTCCCTTCCAGGTCTGCACCACCATGAGGGATGACTACCAGCCTTGGGAGGTCAAGAGACAGGCCATGATCAAGAAGCCTGAGGAGATGCAGAGAGCCACCGGAAGGATGGACCACCTCACCACTTTCAAGGCCCATTTTACACCCCACGAACTGCAGCCCAATGTGAGCTTCAAGCCAGCTCACGCCCCCTTGAGGGCTGATGCCCCATTGGAGAGCGGCACCATGTACAGCACAGAGTTCACCCCcaagagGATCAGCGTTTGTCCAGCTAGCTACGACTCCCTGCCGGGCTTCGTGTTTGAGGACAGCGACGACAGGGGACACAGGTTCTACAGGAAGTTGCCATCTAAGGACATGAACAAGATGGCTGCCGGCATGGCGGTGGCTGTGGTGTCATAACGTTTGACCATGATATTTGGTGACCAATGCTTTTAATCTTAAAAAGAGCGTGTGGAGAGAACTACTTTTGTTTGGTCTGTtatgttttcattttattttccTACTACCTGTATAGTAAGTATCAATGATGTGATAATCAAATGGAACCAACAATTATGAAGAAGTCACAAACAGGCCATTATAAAATAAACTTCCCTGTATTCTGGTTGATGCTTTC
>TU626128
CTTCGATGGGGTGACCAGTAACCAGCAGTGCTATGTGTCCCACCCTCTGGAGGCACGCTGGGTGAAGGCTCCAGAGCCCTATAAACCCAGTAGCCAGCCCCTACAAGACCTCACCACCAACCGAAGAGACTACCAGGGCCTGCCAGGACAGCTGCCCCAGAGCTATAAGCCTAACCCTGGAAAGGTGACGTCTGACGTTCCCTTTCAGAGCAGCACAGAGTTTAAGGAGCGTTTCCAGCAGTGGCCCGTGTCCCTGCCTCAGCTGCACAAGAGCCTGCAGTACGTCAGCCCCACAGAGCACATGGACATGAGCACCACGTCTGGTTCAGTCTACGTCCAACACAACATCCAGCCCTTCATCTCTGCCAAGCCCTTCAATCGGCCCACCAAGTCATCAGCTCCCTTCCAGGTGGGGATGAGACGATAcaggc

Function

NR:

description
stabilizer of axonemal microtubules 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981205.1 False 1711 mRNA 0.53 8 83173467 83183368
TU626128 True 431 lncRNA 0.58 2 83179656 83180590

Neighbor

gene id symbol gene type direction distance location
LOC110506862 LOC106562715 coding downstream 265534 82887425 ~ 82907933 (-)
LOC110506861 LOC106562717 coding downstream 304824 82865251 ~ 82868643 (-)
bnc1 LOC106592271 coding downstream 442790 82704287 ~ 82730677 (-)
LOC110526699 LOC106587711 coding downstream 481082 82678602 ~ 82692385 (-)
LOC110526698 LOC106562729 coding downstream 516111 82646723 ~ 82657356 (-)
LOC110506170 NA coding upstream 345972 83529340 ~ 83542546 (-)
LOC100136088 LOC106587743 coding upstream 463903 83647271 ~ 83704964 (-)
LOC110526710 mesd1 coding upstream 553468 83736836 ~ 83738715 (-)
LOC118964944 cemip coding upstream 572855 83756223 ~ 83912000 (-)
LOC110526992 NA coding upstream 683040 83866408 ~ 83868699 (-)
G552777 NA non-coding downstream 500 83170548 ~ 83172967 (-)
G552742 NA non-coding downstream 98639 83074040 ~ 83074828 (-)
G552706 NA non-coding downstream 151409 82961246 ~ 83022058 (-)
G552711 NA non-coding downstream 192704 82979106 ~ 82980763 (-)
G552707 NA non-coding downstream 200359 82971487 ~ 82973108 (-)
G552901 NA non-coding upstream 7907 83191275 ~ 83208509 (-)
G552958 NA non-coding upstream 118686 83302054 ~ 83302259 (-)
G552959 NA non-coding upstream 118988 83302356 ~ 83302791 (-)
G552962 NA non-coding upstream 125884 83309252 ~ 83309495 (-)
G552965 NA non-coding upstream 130331 83313699 ~ 83314348 (-)
G552584 LOC106587709 other downstream 507022 82665477 ~ 82666445 (-)
G552558 NA other downstream 553223 82612678 ~ 82620244 (-)
G552571 NA other downstream 556273 82609918 ~ 82617194 (-)
G552533 pcsk6 other downstream 606848 82564458 ~ 82566619 (-)
LOC110526691 LOC106562597 other downstream 667704 82481559 ~ 82505982 (-)
G552980 NA other upstream 161833 83345201 ~ 83373196 (-)
G553491 NA other upstream 692846 83876214 ~ 83879504 (-)
LOC110526720 LOC106562647 other upstream 751493 83925574 ~ 83954299 (-)
G553707 NA other upstream 914644 84098012 ~ 84175022 (-)
G554191 NA other upstream 1468719 84652087 ~ 84652416 (-)
G552779 NA non-coding downstream 309 83178912 ~ 83179347 (-)

Expression

LOC110512367(LOC106562561) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC110512367(LOC106562561) Expression in each Bioproject

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LOC110512367(LOC106562561) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 20.
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Co-expression Network