Item | Value |
---|---|
gene id | LOC110526723 |
gene name | arnt2 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048570.1 |
NCBI id | CM023224.2 |
chromosome length | 101096859 |
location | 83978404 ~ 84089424 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
arnt2 | Enables DNA-binding transcription factor activity. Involved in regulation of transcription, DNA-templated; response to hypoxia; and signal transduction. Acts upstream of or within several processes, including animal organ development; neuron differentiation; and positive regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be part of aryl hydrocarbon receptor complex. Predicted to be active in nucleus. Is expressed in several structures, including gut; hatching gland; mandibular arch skeleton; nervous system; and vasculature. Orthologous to human ARNT2 (aryl hydrocarbon receptor nuclear translocator 2). |
description |
---|
PREDICTED: aryl hydrocarbon receptor nuclear translocator 2-like |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036981219.1 | False | 3728 | mRNA | 0.50 | 20 | 83978404 | 84089277 |
XM_036981221.1 | False | 3695 | mRNA | 0.50 | 19 | 83978404 | 84089277 |
XM_036981216.1 | False | 3926 | mRNA | 0.50 | 21 | 83978404 | 84089424 |
XM_036981217.1 | False | 3914 | mRNA | 0.50 | 21 | 83978404 | 84089424 |
XM_036981220.1 | False | 3863 | mRNA | 0.50 | 20 | 83978404 | 84089424 |
XM_036981218.1 | False | 2490 | mRNA | 0.56 | 20 | 83979807 | 84089424 |
TU627106 | True | 756 | lncRNA | 0.47 | 2 | 84085785 | 84089396 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110526720 | LOC106562647 | coding | downstream | 24105 | 83925574 ~ 83954299 (-) |
LOC118964944 | cemip | coding | downstream | 66404 | 83756223 ~ 83912000 (-) |
LOC110526992 | NA | coding | downstream | 109705 | 83866408 ~ 83868699 (-) |
LOC110526710 | mesd1 | coding | downstream | 239689 | 83736836 ~ 83738715 (-) |
LOC100136088 | LOC106587743 | coding | downstream | 273440 | 83647271 ~ 83704964 (-) |
LOC110506870 | fah | coding | upstream | 136837 | 84226261 ~ 84250541 (-) |
LOC110506882 | LOC106562652 | coding | upstream | 161572 | 84250996 ~ 84267954 (-) |
LOC118964949 | NA | coding | upstream | 188831 | 84278255 ~ 84278855 (-) |
LOC118964948 | NA | coding | upstream | 189473 | 84278897 ~ 84280568 (-) |
LOC110512412 | LOC106562588 | coding | upstream | 276265 | 84363849 ~ 84413230 (-) |
G553550 | NA | non-coding | downstream | 6885 | 83971257 ~ 83971519 (-) |
G553547 | NA | non-coding | downstream | 8558 | 83969600 ~ 83969846 (-) |
G553529 | NA | non-coding | downstream | 23181 | 83954938 ~ 83955223 (-) |
G553516 | NA | non-coding | downstream | 58167 | 83920031 ~ 83920237 (-) |
G553514 | NA | non-coding | downstream | 64149 | 83914018 ~ 83914255 (-) |
G553711 | NA | non-coding | upstream | 12257 | 84101681 ~ 84104269 (-) |
G553720 | NA | non-coding | upstream | 52872 | 84142296 ~ 84143542 (-) |
G553727 | NA | non-coding | upstream | 84375 | 84173799 ~ 84174220 (-) |
G553734 | LOC106562659 | non-coding | upstream | 116998 | 84206422 ~ 84209097 (-) |
G553748 | NA | non-coding | upstream | 151986 | 84241410 ~ 84244889 (-) |
G553491 | NA | other | downstream | 98900 | 83876214 ~ 83879504 (-) |
G552980 | NA | other | downstream | 605208 | 83345201 ~ 83373196 (-) |
G552584 | LOC106587709 | other | downstream | 1311959 | 82665477 ~ 82666445 (-) |
G552558 | NA | other | downstream | 1358160 | 82612678 ~ 82620244 (-) |
G553707 | NA | other | upstream | 8588 | 84098012 ~ 84175022 (-) |
G554191 | NA | other | upstream | 562663 | 84652087 ~ 84652416 (-) |
LOC110517996 | cers3 | other | upstream | 624284 | 84699131 ~ 84727986 (-) |
G554286 | LOC106591282 | other | upstream | 810944 | 84900368 ~ 84914202 (-) |
G554658 | NA | other | upstream | 1121330 | 85210754 ~ 85211990 (-) |
G553635 | NA | non-coding | downstream | 6451 | 84078860 ~ 84079334 (-) |
G553632 | NA | non-coding | downstream | 19472 | 84065984 ~ 84066313 (-) |
G553617 | NA | non-coding | downstream | 69650 | 84012266 ~ 84016135 (-) |
G553615 | NA | non-coding | downstream | 81763 | 84003746 ~ 84004022 (-) |
G553614 | NA | non-coding | downstream | 82073 | 84001255 ~ 84003712 (-) |