LOC110506910 (snrpa1)


Basic Information

Item Value
gene id LOC110506910
gene name snrpa1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 85104148 ~ 85107300 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981275.1
TTGTAAGGActggattttttttaaaatcaagaAACCcgcttattacatttttttgctttcCCAGTTAGCCGTCGATATGGTAAAATTATCGGCAGAGCTAATTGAGCAGGCTGCTCAATACACAAACCCCGTGCGCGACAGAGAGCTGGATCTGCGAGGTTACAAAATTCCTGTACTTGAAAACCTTGGGGCTACACTTGACCAGTTTGATACCATCGATTTCTCTGACAATGAAATCAGAAAACTGGACGGCTTCCCTTTGCTCAAGAGGCTCAAAACGTTGCTCATGAACAACAACAGAATATGTCGTGTTGGTGAAAACCTTGAACAGGCATTGCCGAGTATGAGGGAGCTGATCCTCACAAGCAACAACATCCAGGAATTGGGTGATTTGGATCCGCTAGCCTCAGTGAAGACATTGACCCTTCTCAGTCTCCTAAGGAATCCAGTGACCAACAAGAAACACTACAGGCTCTATGTCATCAACAAAATTCCCCAGATTCACGTGCTTGACTTCCAGAAGGTCAAGTTAAAGGAGCGTCAGGAGGCGGAGAAAATGTTCAAGGGCAAACGAGGTGCTCAGCTTGCAAAGGATATTGCCAAGCGGACCAAAACGTTCACCCCCGGAGCTGCCGTGCAGCAGCCTGAGAAGAAGAAGATGGGACCGTCTCCCGCTGACGTGGAAGCGATCAAGAATGCAATAGCTAACGCCTCGTCTCTGGCCGAGGTGGAGAGGTTGAAGGGGATGCTGCAGGCTGGCCAGATCCCCGGACGGGAGGTCAGACAAGTCCCCCCGGAAATGGTGGaggtggaagaggaagaggaggagaacggGGTTGTACATATGCAacgagagatacagacagaggaaGGAAATGGAGtggaggagatggaagaggatGTGGTGGAGGAGGTACAGGGAAAGGTGGAGGAGGTAGATGTCAAGGAGGTGGAGGTAGAAAAGGAAAAagtggaggagaaagaagagggggaggagggtgaaAAACAAGAGTCTGAGGAAGATGAGTCTGAGGACGATGATATGGATGAAGACTCACCGGTTAACGGATCATGATGGTTTTATGCGGATCTCATGTCTCAAGTCTTGCTTGATTTGTAAGTTTATATTTGTTGAGCATGCATGTAATGCCATTTTGAGTTATTTTGAGAAATGAAAATAcaataaacatttttttacaaaA
>TU628061
ttttttgctttcCCAGTTAGCCGTCGATATGGTAAAATTATCGGCAGAGCTAATTGAGCAGGCTGCTCAATACACAAACCCCGTGCGCGACAGAGAGCTGGATCTGCGAGGTTACAAAATTCCTGTACTTGAAAACCTTGGGGCTACACTTGACCAGTTTGATACCATCGATTTCTCTGACAATGAAATCAGAAAACTGGACGGCTTCCCTTTGCTCAAGAGGCTCAAAACGTTGCTCATGAACAACAACAGAATATGTCGTGTTGGTGAAAACCTTGAACAGGCATTGCCGAGTATGAGGGAGCTGATCCTCACAAGCAACAACATCCAGGAATTGGGTGATTTGGATCCGCTAGCCTCAGTGAAGACATTGACCCTTCTCAGTCTCCTAAGGAATCCAGTGACCAACAAGAAACACTACAGGCTCTATGTCATCAACAAAATTCCCCAGATTCACGTGCTTGACTTCCAGAAGGTCAAGTTAAAGGAGCGTCAGGAGGCGGAGAAAATGTTCAAGGGCAAACGAGGTGCTCAGCTTGCAAAGGATATTGCCAAGCGGACCAAAACGTTCACCCCCGGAGCTGCCGTGCAGCAGCCTGAGAAGAAGAAGATGGGACCGTCTCCCGCTGACGTGGAAGCGATCAAGAATGCAATAGCTAACGCCTCGTCTCTGGCCGAGGTGGAGAGGTTGAAGGGGATGCTGCAGGCTGGCCAGATCCCCGGACGGGAGGTCAGACAAGTCCCCCCGGAAATGGTGGaggtggaagaggaagaggaggagaacggGGTTGTACATATGCAacgagagatacagacagaggaaGGAAATGGAGtggagga
>TU628066
CCTTATGCTGGTATGCTCTGCTCTCATTTAGGTTACAAAATTCCTGTACTTGAAAACCTTGGGGCTACACTTGACCAGTTTGATACCATCGATTTCTCTGACAATGAAATCAGAAAACTGGACGGCTTCCCTTTGCTCAAGAGGCTCAAAACGTTGCTCATGAACAACAACAGAATATGTCGTGTTGGTGAAAACCTTGAACAGGCATTGCCGAGTATGAGGGAGCTGATCCTCACAAGCAACAACATCCAGGAATTGGGTGATTTGGATCCGCTAGCCTCAGTGAAGACATTGACCCTTCTCAGTCTCCTAAGGAATCCAGTGACCAACAAGAAACACTACAGGCTCTATGTCATCAACAAAATTCCCCAGATTCACGTGCTTGACTTCCAGAAGGTCAAGTTAAAGGAGCGTCAGGAGGCGGAGAAAATGTTCAAGGGCAAACGAGGTGCTCAGCTTGCAAAGGATATTGCCAAGCGGACCAAAACGTTCACCCCCGGAGCTGCCGTGCAGCAGCCTGAGAAGAAGAAGATGGGACCGTCTCCCGCTGACGTGGAAGCGATCAAGAATGCAATAGCTAACGCCTCGTCTCTGGCCGAGGTGGAGAGGTTGAAGGGGATGCTGCAGGCTGGCCAGATCCCCGGACGGGAGGTCAGACAAGTCCCCCCGGAAATGGTGGaggtggaagaggaagaggaggagaacggGGTTGTACATATGCAacgagagatacagacagaggaaGGAAATGGAGtggagga
>TU628068
ATTAGACCTACGTCATTGTTTTCAGACAGTGACACACTATGGCGTGGACAGCTCAGTTTCTATACCACTATTCCATTGACCTGATGTAATGTTCACAATTTTAATGGTCAATTTATGGTCTGCTAAACAAATGAATGTAATGGGACTGGCAATCTACTCTAATGGTTCTTTCAAAAAGAGTCTGTTCATCACAACCGAAATGCCCATCTAATGTAATGGTTCTGTATGTATGAACTAATACATTTGTTCTGTGCCCTACCCAGAATGCAATAGCTAACGCCTCGTCTCTGGCCGAGGTGGAGAGGTTGAAGGGGATGCTGCAGGCTGGCCAGATCCCCGGACGGGAGGTCAGACAAGTCCCCCCGGAAATGGTGGaggtggaagaggaagaggaggagaacggGGTTGTACATATGCAacgagagatacagacagaggaaGGAAATGGAGtggagga

Function

symbol description
snrpa1 Predicted to enable U2 snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U2 snRNP. Is expressed in female organism. Human ortholog(s) of this gene implicated in connective tissue disease. Orthologous to human SNRPA1 (small nuclear ribonucleoprotein polypeptide A').

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981275.1 False 1202 mRNA 0.47 9 85104148 85107300
TU628061 False 840 TUCP 0.50 9 85104196 85106986
TU628066 False 761 TUCP 0.50 8 85104437 85106986
TU628068 True 457 lncRNA 0.46 2 85106343 85106986

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-19 NA coding upstream 23624 85080452 ~ 85080524 (+)
LOC110526993 LOC106562571 coding upstream 132574 84819145 ~ 84971574 (+)
LOC118964952 NA coding upstream 192758 84907780 ~ 84911390 (+)
LOC110511357 LOC106562593 coding upstream 288954 84779935 ~ 84815194 (+)
asb7 LOC106562481 coding upstream 359806 84734164 ~ 84744342 (+)
LOC110506919 LOC106593804 coding downstream 16891 85124191 ~ 85126313 (+)
LOC110506923 LOC106562745 coding downstream 47728 85155028 ~ 85167703 (+)
LOC118965049 NA coding downstream 75879 85183179 ~ 85184324 (+)
LOC110506925 LOC106591450 coding downstream 80954 85188254 ~ 85197641 (+)
LOC118965050 NA coding downstream 110390 85217690 ~ 85221093 (+)
G554367 NA non-coding upstream 9096 85094702 ~ 85095052 (+)
G554366 NA non-coding upstream 11496 85091751 ~ 85092652 (+)
G554364 NA non-coding upstream 14147 85089789 ~ 85090001 (+)
G554102 chsy1 non-coding upstream 20176 85083309 ~ 85083972 (+)
G554099 NA non-coding upstream 28060 85075821 ~ 85076088 (+)
G554383 NA non-coding downstream 26271 85133571 ~ 85145753 (+)
G554395 NA non-coding downstream 52684 85159984 ~ 85160957 (+)
G554372 NA non-coding downstream 61727 85169027 ~ 85172195 (+)
G554401 NA non-coding downstream 65713 85173013 ~ 85173303 (+)
G554363 NA other upstream 14621 85088904 ~ 85089527 (+)
G554100 LOC106587790 other upstream 23812 85079852 ~ 85080336 (+)
G554013 NA other upstream 246215 84855908 ~ 84857933 (+)
G553978 NA other upstream 349273 84754423 ~ 84754875 (+)
G554423 NA other downstream 117462 85224762 ~ 85225164 (+)
LOC110526726 pax6 other downstream 696545 85781791 ~ 85806164 (+)
G554907 NA other downstream 705345 85812645 ~ 85814303 (+)
LOC118964953 LOC106594589 other downstream 1064384 86171652 ~ 86291885 (+)
G555192 NA other downstream 1184778 86292078 ~ 86293881 (+)

Expression


Co-expression Network