LOC118965049


Basic Information

Item Value
gene id LOC118965049
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 85183179 ~ 85184324 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118965049
atgGGTACTGTCAGTACAGGCCAACTATCCGCTGCCTTAGACactgtgaaccatcagatcctcctctccaccctctcagggttgGGCATCTCAGACTCTGCTCAcccttggattgcatcctacctggcaggtcgCTCCTACCAGGTGGCTGaACACATCTCTGCTTACCTgtcagatatctcagcttggatgtcggcccaccacctcaagtaCAATCTTGACAAGAAGGAGCAGCCTTTCCTTCTGGGGGCGGCCTGCCTGCTTCAAAACCTCTTCATCACGGTTGACAATTCCAGTGTCGCCCTCCCAGAGCACAAataaccttggcgtgaccctggacaacaccctgtagttctctgcaaacatcaaagcagtgactcactcCTGCAGGGTCATGCTCTACAATATCCATAGAGGAACACCTTTCACACATGAAATagtgcaggtcctaatccaggcacttgtcatctcccgtctagACTACTGCATCTCTCTGTTGGCTGTGCTCCACGCTTGTTCTagcaaacccctgcaacttatctaGAATGCCACAGCccacctggtgttcaaccttcctaagttctcccatgtcaccctgctcctccacacactccacttCCAGTCAAAGCTTGCATCATCTTCAAGATCCTGGTGCTTGTCTACGGAACAGCAAGGTGAACTGCCCCTACttaggctatgctcaaaccctacatcccaacccgagccacctctggt
>TU628109
ggacaacaccctgtagttctctgcaaacatcaaagcagtgactcactcCTGCAGGGTCATGCTCTACAATATCCATAGAGGAACACCTTTCACACATGAAATagtgcaggtcctaatccaggcacttgtcatctcccgtctagACTACTGCATCTCTCTGTTGGCTGTGCTCCACGCTTGTTCTagcaaacccctgcaacttatctaGAATGCCACAGCccacctggtgttc

Function

NR:

description
reverse transcriptase-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118965049 False 735 mRNA 0.49 3 85183179 85184324
TU628109 True 232 lncRNA 0.49 1 85183926 85184157

Neighbor

gene id symbol gene type direction distance location
LOC110506923 LOC106562745 coding upstream 15476 85155028 ~ 85167703 (+)
LOC110506919 LOC106593804 coding upstream 56866 85124191 ~ 85126313 (+)
LOC110506910 snrpa1 coding upstream 75879 85104148 ~ 85107300 (+)
trnaa-ugc-19 NA coding upstream 102655 85080452 ~ 85080524 (+)
LOC110526993 LOC106562571 coding upstream 211605 84819145 ~ 84971574 (+)
LOC110506925 LOC106591450 coding downstream 3930 85188254 ~ 85197641 (+)
LOC118965050 NA coding downstream 33366 85217690 ~ 85221093 (+)
LOC110506188 LOC106562741 coding downstream 37589 85221913 ~ 85273940 (+)
LOC110506914 NA coding downstream 108951 85293275 ~ 85303490 (+)
cstf3 cstf3 coding downstream 393788 85578112 ~ 85596032 (+)
G554401 NA non-coding upstream 9876 85173013 ~ 85173303 (+)
G554372 NA non-coding upstream 10984 85169027 ~ 85172195 (+)
G554395 NA non-coding upstream 22222 85159984 ~ 85160957 (+)
G554383 NA non-coding upstream 37426 85133571 ~ 85145753 (+)
G554417 NA non-coding downstream 6860 85191184 ~ 85191589 (+)
G554418 NA non-coding downstream 8871 85193195 ~ 85193796 (+)
G554419 NA non-coding downstream 15370 85199694 ~ 85204517 (+)
G554411 NA non-coding downstream 21885 85206209 ~ 85212316 (+)
G554422 NA non-coding downstream 40184 85224508 ~ 85224740 (+)
G554363 NA other upstream 93652 85088904 ~ 85089527 (+)
G554100 LOC106587790 other upstream 102843 85079852 ~ 85080336 (+)
G554013 NA other upstream 325246 84855908 ~ 84857933 (+)
G554423 NA other downstream 40438 85224762 ~ 85225164 (+)
LOC110526726 pax6 other downstream 619521 85781791 ~ 85806164 (+)
G554907 NA other downstream 628321 85812645 ~ 85814303 (+)
LOC118964953 LOC106594589 other downstream 987360 86171652 ~ 86291885 (+)
G555192 NA other downstream 1107754 86292078 ~ 86293881 (+)
LOC118964952 NA coding upstream 272536 84907780 ~ 84911390 (+)

Expression


Co-expression Network