LOC110506914


Basic Information

Item Value
gene id LOC110506914
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 85293275 ~ 85303490 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021586784.2
CCAATCATTAGTTTGTTTTCTGGAAGCGTCTGTTTGCTGACGAAATGCCCATCTCTTGTACTACAAATTCTTTACCCAGCCCTCAGAGTTTTCAATAGTTAAGAGATTTATCCACACCACACTGAGGGCAGCGATTGCTAAATCATTGTAAAATTTGGACTCCGAAACGGTAAACTCCAGTCATCAATCATGTCATCTGATACTGCTGTAGTTCCATGCAACCATCAAATGGACAGCCCAGATTTCATtagagacctgctccctgctgcaGAGAAGACAGCCCTGCTGTACAACATCTCCTACCTCTGCCTGGCCAAATTCCCCTCTCTGGAGAGAATCATCAGAGCCAATGCTGTTGAGGCCCAAATGCTGTTCTCCTCCTCTGAGGCTCTGCTGCTGCTGTGTGTTAGCACCAGTGACAACATGGTCAAGACATTATTCCCTATGCTGAAGGCTGCTGTGGAGAAAGATAAGCCAGTAGTTGCCATCAAATTCCTGATGAAGGCCAATCAGTGGATCCATGATATCATCAAAGAAGTTGAAAAAATAGTAGAAGCCTACAAGAATCTCAACAATGGGGTGGCGACCGCCACCAGCGATGTTATTTACACCAAAGCCAAAACAGAGGACAAGAATAAACAGCTGACCAATGAAGAGAATatcctgcagaatgctgttgacGAATACAATAGGAAGCTAAGTGTCATCCAGTCAGATCTGACGGAGGTCAATAGAAAAATCAACGATGCTGATACGGAGCTGCGTGAGTTGGTTAACAGCATTACCAGTAGAAACAAGAAGATTGGCATAGTGGCTGCTGTGGTTCCCTTCATAGGATTAATCACCGATGCTATCCAGAAGATAATCAATGACCCTACTGATAGTGCAGCCATTGAGTTGGCCAAGAACAAGATGAATCAGCTTCAGCTGGACAAGACCCGTTTGAGTAAAAACGAATGGGAGGCCCAAACGGAGGCGATGAAACACCAGATGGAGCTGACCAGAGCCAAATTTGACCTGGGTTCTGTTCCTGATCCTGTCCATCTGGCTGAGGTTCAAATCTGCCTGACCCGGATCCAGGAGATTCTGCTGCAACTCAAAAGCTTCTGGGAGAAGATCGGAGTGATGGTGACCAACCTGCAGCAGAAGACCTTTGCTGGGGAAGACCTGATTGATGATCTCTCAGAATTTAAGGAGGAGTTCTTGGATTCATTGAAAGTAGCTGAAGAGGCTTGGAACACGTTTAGTGGGAGATGCCAGAATGTCATGGGCATGTTTAGTGTCCAGTCAAAGGATGCCTACAAGTTCCTGGAGACCAGCCCATCATCTCTCACCCAGGAAGAGTGGCAGGAAATGTATGATGCTGTGACAGCCAAACTGTATTCCTTCTACCCTGCCCTCGAGGCCAAGCAGGCCTTTGAGGACCAGCAGGACATTGAGGACCAGCAGGACATTGAGGACCAGCAGGCTGCAAAAAGTAATTAATGTTTGCATCCACTGTCACCAGGTTAACATTAAAGGAGTTTTGTTTTGTTGGTCTTATATTGACATTGGTGACAAGTAGGATTTGTGGGCATAATTAGTAGTTCACATGCTGTTATGAGTAACTTTCCATTATTTGTTGATCATTGTTGATTATTGTGTTGTGCTTTTATTAGAGCTCATCATCTACTATGCTAACAGTATAATACCAAACTGGCTATTGTTCACCTTTCTTCTTGGAGTATACTAATGTTGTGGGTAGCAGGCAGGTTTTAAGGCTTCTGGTCTGTTCAAAGACTTCAATAGTTTAACTTTGTGCAGAGCTTTCAGGAATATGAACTGAtctatatacatatgtatacGCTACAGTATTCATAAGTAATCATGTATAATCACAATGTATGTTATTGGTATATCAGTATGTCAGTTTCAGTATACTATCACGTATAATTAGTTTAGAGCCATAGAGGTGGAGTTTAGAGCCATAGAGGAGGAGTTTAGAGCCATAGAGGAGGAGATTAGAGTCATAGAGGGTCTTAATTGTACTTTCTTCTGTTCTCT
>TU628125
GTCACCAGGTTAACATTAAAGGAGTTTTGTTTTGTTGGTCTTATATTGACATTGGTGACAAGTAGGATTTGTGGGCATAATTAGTAGTTCACATGCTGTTATGAGTAACTTTCCATTATTTGTTGATCATTGTTGATTATTGTGTTGTGCTTTTATTAGAGCTCATCATCTACTATGCTAACAGTATAATACCAAACTGGCTATTGTTCACCTTTCTTCTTGGAGTATACTAATGTTGTGGGTAGCAGGCAGGTTTTAAGGCTTCTGGTCTGTTCAAAGACTTCAATAGTTTAACTTTGTGCAGAGCTTTCAGGAATATGAACTGAtctatatacatatgtatacGCTACAGTATTCATAAGTAATCATGTATAATCACAATGTATGTTATTGGTATATCAGTATGTCAGTTTCAGTATACTATCACGTATAATTAGTTTAGAGCCATAGAGGAGGAGTTTAGAGCCATAGAGGAGGAGATTAGAGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021586784.2 False 2043 mRNA 0.44 7 85293275 85303490
TU628125 True 489 lncRNA 0.35 2 85302947 85303456

Neighbor

gene id symbol gene type direction distance location
LOC110506188 LOC106562741 coding upstream 19335 85221913 ~ 85273940 (+)
LOC118965050 NA coding upstream 72182 85217690 ~ 85221093 (+)
LOC110506925 LOC106591450 coding upstream 95634 85188254 ~ 85197641 (+)
LOC118965049 NA coding upstream 108951 85183179 ~ 85184324 (+)
LOC110506923 LOC106562745 coding upstream 125572 85155028 ~ 85167703 (+)
cstf3 cstf3 coding downstream 274622 85578112 ~ 85596032 (+)
wt1b LOC106587831 coding downstream 393933 85697423 ~ 85718907 (+)
LOC110526726 pax6 coding downstream 478301 85781791 ~ 85806164 (+)
LOC110526731 LOC107719794 coding downstream 631188 85934678 ~ 85957181 (+)
LOC118965088 NA coding downstream 765798 86069288 ~ 86069806 (+)
G554430 NA non-coding upstream 31764 85261193 ~ 85261511 (+)
G554427 NA non-coding upstream 61425 85231361 ~ 85231850 (+)
G554426 NA non-coding upstream 63633 85229415 ~ 85229642 (+)
G554422 NA non-coding upstream 68535 85224508 ~ 85224740 (+)
G554458 NA non-coding downstream 70417 85373907 ~ 85374141 (+)
G554459 NA non-coding downstream 70812 85374302 ~ 85374642 (+)
G554461 NA non-coding downstream 73706 85377196 ~ 85377527 (+)
G554462 NA non-coding downstream 79695 85383185 ~ 85383449 (+)
G554486 NA non-coding downstream 144062 85447552 ~ 85452512 (+)
G554423 NA other upstream 68111 85224762 ~ 85225164 (+)
LOC110506910 snrpa1 other upstream 186289 85104148 ~ 85107300 (+)
G554363 NA other upstream 203748 85088904 ~ 85089527 (+)
G554100 LOC106587790 other upstream 212939 85079852 ~ 85080336 (+)
LOC110526993 LOC106562571 other upstream 321725 84819145 ~ 84971574 (+)
G554907 NA other downstream 509155 85812645 ~ 85814303 (+)
LOC118964953 LOC106594589 other downstream 868194 86171652 ~ 86291885 (+)
G555192 NA other downstream 988588 86292078 ~ 86293881 (+)
LOC118964955 LOC106592958 other downstream 1047456 86350925 ~ 86353193 (+)

Expression


Co-expression Network