cstf3 (cstf3)


Basic Information

Item Value
gene id cstf3
gene name cstf3
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 85578112 ~ 85596032 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981298.1
GAAGTGAGCATTCAGCCACGCCATTTTGAGAAAACGGCCAGTCACAGCAGTGGGCAGACTGTGTTCATAGCTACTGGAGTCGTCGTGCAGTCATGCGATATAGCTGTTTTTAATTCAATATTTCTATGTTTAAATACTGTTGAAATTTGTAATATAGGTAAACTAAACGTAACCAGTAATGTCCACGGAAGCAACCGCCGACCAGGCAGCTGAGTATATCCCGGAGAAGGTTAAGAAAGCAGAGAAGAAGTTGGAAGAAAACCCATATGACCTTGACGCATGGAGCATTCTGATTCGAGAAGCACAGAACCAACCAATAGACAAAGCAAGGAAGACGTATGAACGACTTGTGGCCCAGTTCCCAAGCTCGGGCAGATTCTGGAAACTATTCATTGAAGCGGAGATCAAGGCAAAAAACTATGACAAGGTAGAAAAGTTGTTTCAGAGATGTCTGATGAAAGTGCTGCACATCGACCTGTGGAAATGCTACCTCTCCTACGTCCGAGAGACGAAAGGAAAGCTACCCAGCTACAAAGAGAAGATGGCGCAGGCGTATGACTTTGCGCTGGATAAAATCGGCATGGAGATCATGTCCTACCAGATATGGGTGGACTACATCAACTTCCTCAAAGGAGTTGAGGCGGTTGGTTCGTACGCTGAAAACCAGCGAATCACGGCGGTGCGCAGGGTCTACCAGAGGGGCTGTGTGAACCCCATGATCAACATCGAGCAGCTCTGGAGAGACTACAGCAAGTATGAGGAGGGCATCAACGTACATCTGGCCAAGAAGATGATTGAGGACCGCAGCAGAGACTACATGAACGCTAGGAGAGTGGCCAAGGAATATGAGACTGTGATGAAGGGTCTGGATAGGAACGCCCCCTCGGTGCCCCCACAGAACTCCCCCCAGGAGGCGGTGCAGGTGGAGATGTGGAAGAAGTACATCCAATGGGAGAAGAGCAACCCGCTCcgcacagaggaccagacactcATCACTAAGAGAGTGATGTTTGCCTATGAGCAGTGTCTGTTGGTGCTGGGCCATCACCCTGATGTGTGGTATGAGGCTGCCCAGTATCTGGACCAGTCCAGTAAACTACTGGCAGAGAAGGGGGACATGAACAACTCTAAGGTGTTCAGTGACGAAGCAGCTAACATCTACGAGCGCGCCATCGGTACTCTACTGAAGAAGAACATGCTGCTGTACTTTTCATTCGCTGACTACGAGGAGAGTCGATTGAAGCATGAAAAGGTCCACAGCATCTACAACCGTCTGCTGGCCATCGAGGACATCGACCCCACGCTGGTCTACATCCAGTACATGAAGTTTGGCAGGCGGGCCGAGGGCATCAAGTCAGGCCGCATCATCTTTAAGAAGGCCCGGGAGGACATGCGCACGCGTCACCACGTCTACGTGACTGCAGCACTGATGGAGTACTACTGCAGTAAGGACAAATCAGTGGCCTTTAAGATATTTGAGCTGGGCTTGAAGAAATATGGAGACATTCCAGAGTATATACTTGCATACATCGATTACCTCTCACACCTTAATGaggacaacaacaccaGAGTTCTGTTTGAGCGTGTTCTCACCTCGGGAAGCCTGTCGCCAGAGAAGTCTGGTGAGATCTGGGCACGTTTCTTGGCCTTTGAGAGTAACATCGGGGACCTGGCCAGTATCCTGAAGGTGGAGCGCAGGCGTTTCACGGCCTTCAAGGATGAGTACGAAGGCAAGGAGACAGCCCTGCTGGTGGACAGATACAAGTTCATGGACCTGTACCCCTGTTCTGCCAGCGAGCTCAAAGCCCTCGGATACAAGgaCGTGTCCCGTGCCAAACTGGCAGCGTTGCTCCAGACAGAGACGGTGGTGACTCCATCGGCTCCCACGCAAAAGGACGAGGCCGACCGCAAACCAGAGTACCCCAAACCTGACACCAGCCAGATGATCCCCTACCAACCACGACACTTGGCCCCTCCAGGACTGCACCCTGTTCCAGGGGGGGTGTTCCCGGTCCCCCCGGCCGCAGTCATCCTGATGAAGCTACTGCCTCCACCAACCTGCTTCGTGGGGCCCTTTGTGCAGGTGGATGAACTGATGGAGAGCTTCAGGAGATGTACACTACCAGAGActgtagATGCAGCAGTAGAGTTGATAACGGGCAGGCAGCCTGATACCGGAGGAGAAGGGAACGGTTCCATGGAGAACCACGCCATGACCAAGTCACTGAAGAGACCCAATGCAGActctgatgaagaggaggacaagGGCGCTGTGGCCCCACCCGTTCACGACATCTACCGCGCTCGCCAGCAGAAGAGGATCCGgtgaacacacactcactcagacacacGCACACTTGGGATGGACTCTGTACAGGAATGTAACCCATTACGTCAAACCTTTTAGGGCAAACAGACTCGTCTGCAGTTTGTCTGGAAGATGCTTTATATCCAACCATCGTTGGTCCCTCTACACACAcctgtgtttgttttgttgttggtgtttttttaacagttttattttttaaagctgGGTGACTAATACTGTACAAAGTTTTTAATTCAACCCTTAATTTGACACTCAGCTGTTTGGCCTTGTGATCCTCTGGTGATGGACAAATGGAATCGACCTGTTTTTCTAGTCAAATTGAGAGAATACATTTCCTTTCAATAAAAAGAGGAGAAAAGAACCCAAACTAAA
>TU628267
TTTTGAGAAAACGGCCAGTCACAGCAGTGGGCAGACTGTGTTCATAGCTACTGGAGTCGTCGTGCAGTCATGCGATATAGCTGTTTTTAATTCAATATTTCTATGTTTAAATACTGTTGAAATTTGTAATATAGGTAAACTAAACGTAACCAGTAATGTCCACGGAAGCAACCGCCGACCAGGCAGCTGAGTATATCCCGGAGAAGGTTAAGAAAGCAGAGAAGAAGTTGGAAGAAAACCCATATGACCTTGACGCATGGAGCATTCTGATTCGAGAAGCACAGGTTTAGTGACTCAGGGTTGCATTCCTCTTACCTGGGGTAATCGATTGGGtcaagggagggagagggtggggctcaagagGGTGGTGGGTGGGGATCTAACAGAAAAATTACAAATGTGTCATATAGGACTGTTTCAACTTGTTTGTCAACAAGTGCACATGTAAATGCATTCTACCCTTTTAGAACCAACCAATAGACAAAGCAAGGAAGACGTATGAACGACTTGTGGCCCAGTTCCCAAGCTCGGGCAGATTCTGGAAACTATTCATTGAAGCGGAGGTTAATATTTTTATCAATTTCTCACAACTACATGTGTGCATGGGTGTGCATATCCTAACAGGATCAACAATGTGACTTTCACACAACAAATAGGTCCACTTCATCTCAATGGTATTTTTTTAAAGTACGAGGGGTTTAGGTTACTATCTTAACCATTTATTTTTCAGGACGCAGACTGTATGTTCCTCAGTAGAAAAAACAACTATTTTCTACGTCTTTAAATGGGGTTAAGTGCATTTGTTGCATGTTTGATCTGCAACAGCATTAAAACTTTTTAATGGTATTGGAGTGC
>TU628268
CCACCACTCACTGTTGGTGACATCATGTGGCTGTTGTGCTGATGTTGTGGTGTTTCTGCAGGGGCCCTTTGTGCAGGTGGATGAACTGATGGAGAGCTTCAGGAGATGTACACTACCAGAGActgtagATGCAGCAGTAGAGTTGATAACGGGCAGGCAGCCTGATACCGGAGGAGAAGGGAACGGTTCCATGGAGAACCACGCCATGACCAAGTCACTGAAGAGACCCAATGCAGActctgatgaagaggaggacaagGGCGCTGTGGCCCCACCCGTTCACGACATCTACCGCGCTCGCCAGCAGAAGAGGATCCGgtgaacacacactcactcagacacacGCACACTTGGGATGGACTCTGTACAGGAATGTAACCCATTACGTCAAACCTTTTAGGGCAAACAGACTCGTCTGCAGTTTGTCTGGAAGATGCTTTATATCCAACCATCGTTGGTCCCTCTACACACAcctgtgtttgttttgttgttggtgtttttttaacagttttattttttaaagctgGGTGACTAATACTGTACAAAGTTTTTAATTCAACCCTTAATTTGACACTCAGCTGTTTGGCCTTGTGATCCTCTGGTGATGGACAAATGGAATCGACCTGTTTTTCTAGTCAAATTGAGAGAATACATTTCCTTTCAATAAAAAGAGGAGAAAAGAAC

Function

symbol description
cstf3 Predicted to enable mRNA binding activity. Predicted to be involved in RNA 3'-end processing. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Orthologous to human CSTF3 (cleavage stimulation factor subunit 3).

NR:

description
cleavage stimulation factor subunit 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981298.1 False 2701 mRNA 0.51 20 85578112 85596032
TU628267 False 855 lncRNA 0.41 2 85578135 85579858
TU628268 True 684 lncRNA 0.47 2 85595239 85596022

Neighbor

gene id symbol gene type direction distance location
LOC110506914 NA coding upstream 274622 85293275 ~ 85303490 (+)
LOC110506188 LOC106562741 coding upstream 304172 85221913 ~ 85273940 (+)
LOC118965050 NA coding upstream 357019 85217690 ~ 85221093 (+)
LOC110506925 LOC106591450 coding upstream 380471 85188254 ~ 85197641 (+)
LOC118965049 NA coding upstream 393788 85183179 ~ 85184324 (+)
wt1b LOC106587831 coding downstream 101391 85697423 ~ 85718907 (+)
LOC110526726 pax6 coding downstream 185759 85781791 ~ 85806164 (+)
LOC110526731 LOC107719794 coding downstream 338646 85934678 ~ 85957181 (+)
LOC118965088 NA coding downstream 473256 86069288 ~ 86069806 (+)
LOC118964953 LOC106594589 coding downstream 575620 86171652 ~ 86291885 (+)
G554517 NA non-coding upstream 76473 85501283 ~ 85501639 (+)
G554516 NA non-coding upstream 77372 85500167 ~ 85500740 (+)
G554515 NA non-coding upstream 79279 85497820 ~ 85498833 (+)
G554514 NA non-coding upstream 81515 85496287 ~ 85496597 (+)
G554513 NA non-coding upstream 82970 85494683 ~ 85495142 (+)
G554566 NA non-coding downstream 6877 85602909 ~ 85603176 (+)
G554567 NA non-coding downstream 7299 85603331 ~ 85603680 (+)
G554569 NA non-coding downstream 9232 85605264 ~ 85620087 (+)
G554570 NA non-coding downstream 10502 85606534 ~ 85619386 (+)
G554585 NA non-coding downstream 51273 85647305 ~ 85650505 (+)
G554423 NA other upstream 352948 85224762 ~ 85225164 (+)
LOC110506910 snrpa1 other upstream 471126 85104148 ~ 85107300 (+)
G554363 NA other upstream 488585 85088904 ~ 85089527 (+)
G554100 LOC106587790 other upstream 497776 85079852 ~ 85080336 (+)
LOC110526993 LOC106562571 other upstream 606562 84819145 ~ 84971574 (+)
G554907 NA other downstream 216613 85812645 ~ 85814303 (+)
G555192 NA other downstream 696046 86292078 ~ 86293881 (+)
LOC118964955 LOC106592958 other downstream 754914 86350925 ~ 86353193 (+)

Expression


Co-expression Network