Gene
RNA
| Item | Value |
|---|---|
| gene id | elp4 |
| gene name | elp4 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 85812100 ~ 85935007 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| elp4 | Predicted to enable phosphorylase kinase regulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II and tRNA wobble uridine modification. Predicted to act upstream of or within tRNA processing. Predicted to be located in nucleus. Predicted to be part of elongator holoenzyme complex and transcription elongation factor complex. Predicted to be active in cytoplasm. Is expressed in head and trunk. Human ortholog(s) of this gene implicated in aniridia. Orthologous to human ELP4 (elongator acetyltransferase complex subunit 4). |
| description |
|---|
| complement C3-like |
| id | name | namespace |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0033588 | elongator holoenzyme complex | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036981322.1 | False | 3328 | mRNA | 0.51 | 10 | 85812100 | 85935007 |
| TU628835 | False | 1656 | lncRNA | 0.51 | 3 | 85812671 | 85891582 |
| TU628836 | False | 1607 | lncRNA | 0.51 | 3 | 85812671 | 85891582 |
| TU628838 | True | 1511 | lncRNA | 0.51 | 4 | 85812671 | 85891582 |
85,720,000
85,740,000
85,760,000
85,780,000
85,800,000
85,820,000
85,840,000
85,860,000
85,880,000
85,900,000
85,920,000
85,940,000
85,960,000
NC_048570.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110506939 | LOC106596505 | coding | downstream | 55772 | 85741675 ~ 85779604 (-) |
| eif3m | csn7 | coding | downstream | 131990 | 85673680 ~ 85680110 (-) |
| LOC110506935 | LOC106562570 | coding | downstream | 142315 | 85664502 ~ 85669785 (-) |
| LOC118936664 | LOC106562605 | coding | downstream | 147809 | 85642286 ~ 85664291 (-) |
| LOC110506192 | LOC106593648 | coding | downstream | 168643 | 85604261 ~ 85643457 (-) |
| LOC118964954 | NA | coding | upstream | 406891 | 86341898 ~ 86346739 (-) |
| LOC118964956 | rabp1 | coding | upstream | 477585 | 86412450 ~ 86424523 (-) |
| LOC110526738 | LOC106587653 | coding | upstream | 492525 | 86427532 ~ 86432060 (-) |
| LOC110526741 | NA | coding | upstream | 504608 | 86439615 ~ 86447991 (-) |
| LOC110526766 | LOC106562456 | coding | upstream | 615259 | 86550266 ~ 86555102 (-) |
| G554998 | NA | non-coding | downstream | 7388 | 85803840 ~ 85804712 (-) |
| G554877 | NA | non-coding | downstream | 78345 | 85733109 ~ 85733755 (-) |
| G554870 | NA | non-coding | downstream | 93205 | 85717557 ~ 85718895 (-) |
| G554868 | NA | non-coding | downstream | 96985 | 85714859 ~ 85715115 (-) |
| G555074 | LOC106562586 | non-coding | upstream | 13616 | 85948623 ~ 85957231 (-) |
| G555085 | NA | non-coding | upstream | 31110 | 85966117 ~ 85967044 (-) |
| G555108 | NA | non-coding | upstream | 56346 | 85991353 ~ 85992058 (-) |
| G555117 | NA | non-coding | upstream | 69472 | 86004479 ~ 86004961 (-) |
| G555129 | NA | non-coding | upstream | 87967 | 86022974 ~ 86023213 (-) |
| G554819 | NA | other | downstream | 179413 | 85630576 ~ 85632687 (-) |
| G554679 | NA | other | downstream | 494986 | 85240999 ~ 85317114 (-) |
| G555590 | LOC106587652 | other | upstream | 457740 | 86392747 ~ 86393060 (-) |
| G555606 | NA | other | upstream | 499934 | 86434941 ~ 86437902 (-) |
| G555617 | NA | other | upstream | 520117 | 86455124 ~ 86457965 (-) |
| LOC110506946 | LOC106562772 | other | upstream | 1522970 | 87456447 ~ 87498104 (-) |
| G555053 | NA | non-coding | upstream | 15566 | 85907148 ~ 85907423 (-) |
