LOC110526731 (LOC107719794)


Basic Information

Item Value
gene id LOC110526731
gene name LOC107719794
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 85934678 ~ 85957181 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981321.1
CAGTGGTTGAAGACATGCAGTTGAATAGTGACAACATTCCTTTAAAACtaactaaatgtaaaaaaaaatgttagatAGTTTAATCAATCAGAAAAAGCAAAACTCGCGTTAGCTAGCTGTCAACACATTCGTGGCAGACTGACCAATCACGTAGTCGAGAGATGTGACACCAGTCGAAACAATAAGTTGCCCGTTTTGAATCGAAGGTCTTGTGCCAGGTATTGAAACTAGTTTGCTTCGTGATTTCTTCTGAAAACTGGTGGTATTGCACGGTAAACGGTCCACGGTGGGTTTACCCACGCTCATCTTGGGGGCCGCCATGTTTTTTCCCCCGTGGTGACGGATGTTTTGAATTACATCAACCCAATCAGAGCTGGGATTGCTCAGTCGCTACCAATCACAGAAGCAGTTGTAAGGTAGCGTGTCTGTGTGAGGGCAGCTTCCGTAGCTGTCGGCGCTGGATAGCGgtGGTGAGATGTTCCGCAGTGCGCTGGGGAAGACCCTCGGCTTCGTGGGATACACCATCCAGTACGGCTGCGTCGCCCACTGTGCCTTTGAGTACATCGGAGAGTTTGTTGCGTGCTCTGGTCCTTCTATGGAGCCCACCATCACAAGCCACAACGTTGTCTTCTCAGAACGGTTGAGTCGCCATCTCTGCAGAATCGAGAATGGTGATATAGTCATCGCTAAGAGTCCATTTGATCCACATATGAACATCTGTAAAAGAGTCATCGGTTTGGAGGGAGACAAAGTCTGCACCAGTGGCCCCTCGGATGTCTTCAAGACCCACCAATACGTTCCAAAAGGGCACGTGTGGCTGGAAGGGGATAATCTTAGGAATTCCACAGACTCCAGGAGCTACGGCCCAGTTCCCTATGCCCTGATTCGAGGCCGTGTCTGCTTAAAGCTCTGGCCTCTACATCATGTTGGTGCCCTCAACCAAAGTCCCACAGGACGAGTCGTAAGAAGGAGTGACTGAGTCTACTGATCTGTGTACATGCATCATTTTGTAATATTTTCTAATTAAAGGCATATTTATCTTGAA
>TU628804
GGGCAGCTTCCGTAGCTGTCGGCGCTGGATAGCGgtGGTGAGATGTTCCGCAGTGCGCTGGGGAAGACCCTCGGCTTCGTGGGATACACCATCCATGCTCTGGTCCTTCTATGGAGCCCACCATCACAAGCCACAACGTTGTCTTCTCAGAACGGTTGAGTCGCCATCTCTGCAGAATCGAGAATGGTGATATAGTCATCGCTAAGAGTCCATTTGATCCACATATGAACATCTGTAAAAGAGTCATCGGTTTGGAGGGAGACAAAGTCTGCACCAGTGGCCCCTCGGATGTCTTCAAGACCCACCAATACCTCTGGCCTCTACATCATGTTGGTGCCCTCAACCAAAGTCCCACAGGACGAGTCGTAAGAAGGAGTGACTGAGTCTACTGATCTGTGTACATGCATCATTTTGTAATATTTTCTAATTAAAGGCATATTTATCTTGAA

Function

NR:

description
mitochondrial inner membrane protease subunit 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981321.1 False 1045 mRNA 0.48 6 85934678 85957181
TU628804 True 449 lncRNA 0.49 5 85935111 85957181

Neighbor

gene id symbol gene type direction distance location
LOC110526726 pax6 coding upstream 128514 85781791 ~ 85806164 (+)
wt1b LOC106587831 coding upstream 215771 85697423 ~ 85718907 (+)
cstf3 cstf3 coding upstream 338646 85578112 ~ 85596032 (+)
LOC110506914 NA coding upstream 631188 85293275 ~ 85303490 (+)
LOC110506188 LOC106562741 coding upstream 660738 85221913 ~ 85273940 (+)
LOC118965088 NA coding downstream 112107 86069288 ~ 86069806 (+)
LOC118964953 LOC106594589 coding downstream 214471 86171652 ~ 86291885 (+)
LOC118965051 NA coding downstream 365063 86322244 ~ 86323503 (+)
LOC110526100 LOC106593965 coding downstream 389300 86346481 ~ 86349061 (+)
LOC118964955 LOC106592958 coding downstream 393744 86350925 ~ 86353193 (+)
G554955 NA non-coding upstream 19258 85914831 ~ 85915420 (+)
G554954 NA non-coding upstream 21789 85912307 ~ 85912889 (+)
G554939 NA non-coding upstream 49320 85876576 ~ 85885358 (+)
G554940 NA non-coding upstream 49984 85881911 ~ 85884694 (+)
G554924 NA non-coding upstream 85634 85845076 ~ 85849044 (+)
G554976 NA non-coding downstream 4881 85962062 ~ 85963216 (+)
G554977 NA non-coding downstream 8855 85966036 ~ 85967041 (+)
G555107 NA non-coding downstream 34171 85991352 ~ 85992060 (+)
G555113 NA non-coding downstream 45014 86002195 ~ 86002445 (+)
G555114 NA non-coding downstream 46149 86003330 ~ 86003579 (+)
G554907 NA other upstream 120375 85812645 ~ 85814303 (+)
G554423 NA other upstream 709514 85224762 ~ 85225164 (+)
LOC110506910 snrpa1 other upstream 827692 85104148 ~ 85107300 (+)
G554363 NA other upstream 845151 85088904 ~ 85089527 (+)
G555192 NA other downstream 334897 86292078 ~ 86293881 (+)
G555405 LOC106587654 other downstream 492663 86449844 ~ 86450612 (+)
LOC110526767 LOC106587658 other downstream 584170 86534461 ~ 86544504 (+)

Expression


Co-expression Network