LOC118965088


Basic Information

Item Value
gene id LOC118965088
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 86069288 ~ 86069806 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052422.1
AGATACTCCTCACAGGTAGATTCTACAGTAACTAGGTAGATTCCCTAACAGGTAGATTCTATAGTAACTAGGTAGATTCCCTAACAGGTGGATTCTACAGTAACTAGGTAGATTCCATAACAGGTGGATTCTACAGTAACTAGGTAGATTCCGTAACAGGTAGATTCTACAGTAACTAGGTAGATTCCCTCACAGGTAGATTCTACAGTAACTAGGTAGATTTCCCTAACAGGTGGATTCTACAGTAACTAGGTAGATTTCCCTCACAGGTGGATTCTACAGTAACTAGGTAGATTCTACAGTAATCAGGTAGATTCCCTTCACAATGAGAGGTGCTTGTGTGCAACCAGTAGTTAGTAATCAAAGACATCGCTAAGGCAGGTTTGGTT
>XR_005052421.1
CTCCTCACAGGTAGATTCTACAGTAACTAGGTAGATTCCCTAACAGGTAGATTCTACAGTAATTAAGTAGATACTCCTCACAGGTAGATTCTATAGTAACTAGGTAGATTTCCCTCACAGGTGGATTCTACAGTAACTAGGTAGATTCTACAGTAATCAGGTAGATTCCCTTCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052422.1 False 389 mRNA 0.41 3 86069288 86069806
XR_005052421.1 True 176 mRNA 0.39 3 86069293 86069742

Neighbor

gene id symbol gene type direction distance location
LOC110526731 LOC107719794 coding upstream 112107 85934678 ~ 85957181 (+)
LOC110526726 pax6 coding upstream 263124 85781791 ~ 85806164 (+)
wt1b LOC106587831 coding upstream 350381 85697423 ~ 85718907 (+)
cstf3 cstf3 coding upstream 473256 85578112 ~ 85596032 (+)
LOC110506914 NA coding upstream 765798 85293275 ~ 85303490 (+)
LOC118964953 LOC106594589 coding downstream 101846 86171652 ~ 86291885 (+)
LOC118965051 NA coding downstream 252438 86322244 ~ 86323503 (+)
LOC110526100 LOC106593965 coding downstream 276675 86346481 ~ 86349061 (+)
LOC118964955 LOC106592958 coding downstream 281119 86350925 ~ 86353193 (+)
LOC110526102 LOC106587651 coding downstream 284032 86353838 ~ 86366007 (+)
G555146 NA non-coding upstream 11121 86057826 ~ 86058167 (+)
G555137 NA non-coding upstream 18226 86032541 ~ 86051062 (+)
G555119 NA non-coding upstream 57359 86007261 ~ 86011929 (+)
G555114 NA non-coding upstream 65709 86003330 ~ 86003579 (+)
G555113 NA non-coding upstream 66843 86002195 ~ 86002445 (+)
G555160 NA non-coding downstream 1302 86071108 ~ 86071720 (+)
G555164 NA non-coding downstream 8893 86078699 ~ 86079176 (+)
G555167 NA non-coding downstream 23281 86093087 ~ 86093391 (+)
G555181 NA non-coding downstream 47343 86117149 ~ 86117438 (+)
G555183 NA non-coding downstream 48051 86117857 ~ 86118362 (+)
G554907 NA other upstream 254985 85812645 ~ 85814303 (+)
G554423 NA other upstream 844124 85224762 ~ 85225164 (+)
LOC110506910 snrpa1 other upstream 962302 85104148 ~ 85107300 (+)
G554363 NA other upstream 979761 85088904 ~ 85089527 (+)
G555192 NA other downstream 222272 86292078 ~ 86293881 (+)
G555405 LOC106587654 other downstream 380038 86449844 ~ 86450612 (+)
LOC110526767 LOC106587658 other downstream 471545 86534461 ~ 86544504 (+)

Expression


Co-expression Network