LOC118964953 (LOC106594589)


Basic Information

Item Value
gene id LOC118964953
gene name LOC106594589
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 86171652 ~ 86291885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981323.1
tctgacCCCAGTGGCAGTCCCATCTCACTACACCGCTCTTCGGCTTCTCCTCTGTCAGAtcgaggctgctctctctctctctcttgctccccctcTCCGCTTCTGTCTGTCTCGTTTCCACAAGAGCCAGCCGAGGTCCCCCAGGGTCGAAGGTTCTGCCCTGCCCGCCCAGACTGCAACCCCCGCCGGCCTCCAAATCGGCATTCTCCCGCATGGATCTGCGTCTTTTGACAGCGTAGAGGGCGACCCCGGGACACGTATCCGCCAGAACGAAGattgctgtgtggttgtggtccaGTGTGGTTGATCCGGTTTTGTACACGAGGCGGTTATAGTTCTGAGCAGCGGTTCTGAATGATGACCGCTGAACGGTTCAGCCTTGGATCCTGGTGAACTGTGTCTGATGTCCGAACGGCGGAAGCATGGCTCATGGAATCGCCTCTCAGGGCAAAGTGACCATCACAGTGGACGAGTACAGCTCCAACCCCACACAGGCCTTCACTCACTACAACATCAACCAGAGCCGCTTTCAACCTCCACATGTCCacatggtggaCCCTACCCCGTATGACACTCCTAAGCCAGCAGGACACACGCGGTTTGTGTGTGTTTCGGACACCCACTCCCGTACAGATGGGATTCAGATGCCCTATGGTGATGTGCTGCTCCACACGGGAGACTTCACTGAGCTGGGCCTGCCCTCTGAGGTCAAGAAGTTCAACGACTGGCTAgGTGGTCTACCCTATGAGTTTAAGGTGGTGATAGCAGGGAACCATGAGCTGACCTTCGATAAGGACTTTATGGCTGAGCTGGTCAAGCAGGATTACTACCGTTTTCCCTCCGTGTCCAAACTGAAGCCCGAGGACTTTGATGACGTCCAGGACCTCCTCACTAACTGTGTGTACCTCCAGGACTCTGACGTCACCGTCAAAGGCTTCCGGATATATGGGACACCATGgaGCCCGTGGTTTAACGGCTGGGGGTTCAACCTGCCTAGGGGCCAGTCTCTGCTGGATAAATGGAACCAAGTCCCAGAGGGCATTGACATCCTCATGACCCACTGCCCTCCCCTCGGGTTCAGAGACTGGGTTCCTAAGGAGCTGCAGAGGGTGGGCTGTGTGGAGCTGCTCAACACGGTCCAGAGGAGGGTCCGGCCCAAACTACACGCCTTCGGAGGaatacatgaagGGTATGGCATCATGACTGACGGCTGCACCACGTTCATCAACTCGTCCACGTGCACGATCAGCTTCCAGCCCACCAACCCCCCAATCGTGTTCGACCTGCCCAACCCCTCCAGCTCCTGAGAATGACCTGTGAAAGAGGGGGGGAGTGGTTGGCCAGAATAACCTTTTTTTTTCTAACAAATAATGTCAAAATAATTATATTAAGTGTTTCTCTCAAATATTGTTATTTTGTAAGCTGTAAAGTGAAAGAGTGTGGGGGGTGTAGGGTTAGATGGGGGGTGGGGTGTAGGGTTATAGGGTGCTGAGTGGTTATAGGGTGCTGAGTGGTTATAGGGTGCTGAGTGGTTATACAATCTTGCTATGGAAGAAAAAGCAGTCGGATCTGTAAGATAAATGATGCTTTGTGAATTTGTACAATTTCCTTCGTTTTTGGGGTTTGTGTTTGCTGGAAACGTCGGTATTGGATGCCATTGTTGATTTTGTACGTTCTTGTTTTTTGTGTTTGGTTTCATTTTGTTTCCTGGACAACTCTGctttctgattggctgacagggACGATGCCTTAAACTAGCTTTAATGTTGTCAGCTAGAGCCCCACTCTCTGCAAGCTCAGAGAAAGACCTTATTTATTATTAACTTGTGTCTATCAACCCAGTCAAACTACACCACACAGAGCAGGGAAAGAAATCTATCAAATTATACGCTTGAGATAATCTAACATCTACCGTCTGCAATTCTGATACATCTGGAGGAGagctagtatatatatatatatatatatatatatatatatatatatatatatatataca
>TU629099
CCGCTCTTCGGCTTCTCCTCTGTCAGAtcgaggctgctctctctctctctcttgctccccctcTCCGCTTCTGTCTGTCTCGTTTCCACAAGAGCCAGCCGAGGTCCCCCAGGGTCGAAGGTTCTGCCCTGCCCGCCCAGACTGCAACCCCCGCCGGCCTCCAAATCGGCATTCTCCCGCATGGATCTGCGTCTTTTGACAGCGTAGAGGGCGACCCCGGGACACGTATCCGCCAGAACGAAGattgctgtgtggttgtggtccaGTGTGGTTGATCCGGTTTTGTACACGAGGCGGTTATAGTTCTGAGCAGCGGTTCTGAATGATGACCGCTGAACGGTTCAGCCTTGGATCCTGGTGAACTGTGTCTGATGTCCGAACGGCGGAAGCATGGCTCATGGAATCGCCTCTCAGGGCAAAGTGACCATCACAGTGGACGAGTACAGCTCCAACCCCACACAGGCCTTCACTCACTACAACATCAACCAGAGCCGCTTTCAACCTCCACATGTCCacatggtggaCCCTACCCCGTATGACACTCCTAAGCCAGCAGGACACACGCGGTTTGTGTGTGTTTCGGACACCCACTCCCGTACAGATGGGATTCAGATGCCCTATGGTGATGTGCTGCTCCACACGGGAGACTTCACTGAGCTGGGCCTGCCCTCTGAGGTCAAGAAGTTCAACGACTGGCTAgGTGGTCTACCCTATGAGTTTAAGGTGGTGATAGCAGGGAACCATGAGCTGACCTTCGATAAGGACTTTATGGCTGAGCTGGTCAAGCAGGATTACTACCGTTTTCCCTCCGTGTCCAAACTGAAGCCCGAGGACTTTGATGACGTCCAGGACCTCCTCACTAACTGTGTGTACCTCCAGGACTCTGACGTCACCGTCAAAGGCTTCCGG
>TU629100
TTTAACGGCTGGGGGTTCAACCTGCCTAGGGGCCAGTCTCTGCTGGATAAATGGAACCAAGTCCCAGAGGGCATTGACATCCTCATGACCCACTGCCCTCCCCTCGGGTTCAGAGACTGGGTTCCTAAGGAGCTGCAGAGGGTGGGCTGTGTGGAGCTGCTCAACACGGTCCAGAGGAGGGTCCGGCCCAAACTACACGCCTTCGGAGGaatacatgaagGGTATGGCATCATGACTGACGGCTGCACCACGTTCATCAACTCGTCCACGTGCACGATCAGCTTCCAGCCCACCAACCCCCCAATCGTGTTCGACCTGCCCAACCCCTCCAGCTCCTGAGAATGACCTGTGAAAGA
>TU629101
GTGCTGAGTGGTTATAGGGTGCTGAGTGGTTATAGGGTGCTGAGTGGTTATACAATCTTGCTATGGAAGAAAAAGCAGTCGGATCTGTAAGATAAATGATGCTTTGTGAATTTGTACAATTTCCTTCGTTTTTGGGGTTTGTGTTTGCTGGAAACGTCGGTATTGGATGCCATTGTTGATTTTGTACGTTCTTGTTTTTTGTGTTTGGTTTCATTTTGTTTCCTGGACAACTCTGctttctgattggctgacagggACGATGCCTTAAACTAGCTTTAATGTTGTCAGCTAGAGCCCCACTCTCTGCAAGCTCAGAGAAAGACCTTATTTATTATTAACTTGTGTCTATCAACCCAGTCAAACTACACCACACAGAGCAGGGAAAGAAATCTATCAAATTATACGCTTGAGATAATCTAACATCTACCGTCTGCAATTCTGATACATCTGGAGGAGagctagtatatatatatatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981323.1 False 1999 mRNA 0.50 7 86171652 86291885
TU629099 False 909 TUCP 0.56 4 86171684 86222800
TU629100 False 356 TUCP 0.58 3 86287927 86291210
TU629101 True 477 lncRNA 0.39 1 86291372 86291848

Neighbor

gene id symbol gene type direction distance location
LOC118965088 NA coding upstream 101846 86069288 ~ 86069806 (+)
LOC110526731 LOC107719794 coding upstream 214471 85934678 ~ 85957181 (+)
LOC110526726 pax6 coding upstream 365488 85781791 ~ 85806164 (+)
wt1b LOC106587831 coding upstream 452745 85697423 ~ 85718907 (+)
cstf3 cstf3 coding upstream 575620 85578112 ~ 85596032 (+)
LOC118965051 NA coding downstream 30359 86322244 ~ 86323503 (+)
LOC110526100 LOC106593965 coding downstream 54596 86346481 ~ 86349061 (+)
LOC118964955 LOC106592958 coding downstream 59040 86350925 ~ 86353193 (+)
LOC110526102 LOC106587651 coding downstream 61953 86353838 ~ 86366007 (+)
LOC110526995 LOC106587650 coding downstream 74260 86366145 ~ 86383561 (+)
G555220 NA non-coding upstream 5399 86165974 ~ 86166253 (+)
G555217 NA non-coding upstream 13186 86158059 ~ 86158466 (+)
G555216 NA non-coding upstream 13672 86157711 ~ 86157980 (+)
G555215 NA non-coding upstream 14648 86156793 ~ 86157004 (+)
G555213 NA non-coding upstream 17395 86154003 ~ 86154257 (+)
G555192 NA non-coding downstream 1601 86292078 ~ 86293881 (+)
G555324 NA non-coding downstream 4352 86296237 ~ 86296550 (+)
G555327 NA non-coding downstream 17093 86308978 ~ 86309249 (+)
G555334 NA non-coding downstream 28893 86320778 ~ 86321100 (+)
G555344 NA non-coding downstream 51713 86343598 ~ 86344331 (+)
G554907 NA other upstream 357349 85812645 ~ 85814303 (+)
G554423 NA other upstream 946488 85224762 ~ 85225164 (+)
LOC110506910 snrpa1 other upstream 1064666 85104148 ~ 85107300 (+)
G554363 NA other upstream 1082125 85088904 ~ 85089527 (+)
G555405 LOC106587654 other downstream 157959 86449844 ~ 86450612 (+)
LOC110526767 LOC106587658 other downstream 249466 86534461 ~ 86544504 (+)
G555456 NA other downstream 277188 86569073 ~ 86570234 (+)
G555256 NA non-coding upstream 31822 86259226 ~ 86259550 (+)
G555253 NA non-coding upstream 36483 86254593 ~ 86254889 (+)
G555252 NA non-coding upstream 41775 86249379 ~ 86249597 (+)
G555251 NA non-coding upstream 43267 86247742 ~ 86248105 (+)
G555250 NA non-coding upstream 45101 86246050 ~ 86246271 (+)
LOC118964953 LOC106594589 other upstream 162 86171652 ~ 86291885 (+)

Expression


Co-expression Network