LOC118964955 (LOC106592958)


Basic Information

Item Value
gene id LOC118964955
gene name LOC106592958
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 86350925 ~ 86353193 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981330.1
TTCTTACTTTTCTCTGTTTACGTCCTAGTCCTGTTCAACACATATATCCATAATCTTTGTCGTGGCTCAATGTTATTACTTTGTTAAACCTAAAATGTCTAAACTACATTCGTTGAATGCGTTTCTTACTGCCCGATTAACTGCGGCTGCTGTGGATATATTCGGGGCAGTGGAGAAGACTATAACAGCGTACCAGGAAGAAGTCTCCAGATCAAAAGTGGAGAACGACCATCTACGGAGGCTGTTGCTAGATTTCGGTTTCAAACCTGATAGAGAATCACAAATACCAGACCCCCAGCagctcactgtctctgtctctggagaGGAGGTTCCCTCTAAGCAGGAGTGGAGTGATCAAGAGGACACAGAGACCATATTCATTCCCCCCTGTGTGGAAAGTGCCAGTGATCAGGACTCACCCCAGAGCTCATACCTTTACCAAATTGGGAAGAACAGCAAGAGGGACTCTCTTCCCACCAACTCAACAGAACCGATCAAAACCAATCACGATGGAGAGGACTACGGGGCATCAGAATCAACCAGTAACTCTCAGACCATGTCAAAGTCAAAACATACACAGGCAAAGAAAGGACAAAGTCCTCTTGACACTGGgataaccagtgagctgagagcACCAATGGTGGCTCACACAGGTGATAGACCACACAAGTGCCCTGTGTGCAGGAAAAGGTTTACTAATAACAACCATTTAAAAACACATCAGAGAATTCACACAGGGGAGAGGCCACATTGGTGCAAAGAATGTGGTAAGTGCTTCAGCCGCAAGGGGGATCTGGGCACACACATgaggactcacacaggagagaaaccgtacCAGTGCAGCGTTTGTGGCAAAAGCTTCAGGCGAAACCGACTGAATGAGCATATGAGGGTACACACAGGGGAAAGACCCTATCGGTGTGCCGACTGTGAGAAGGGCTTTATTTCAGTAAGTGACCTAAAACGCCACCAGCGCATTCACACGGGAGAAAAGCCTTTTAGGTGTGACAGTTGCGGAAAATGCTTCAGTCAGATGACAACCTTGAAGAAACATATGAGGACTGTTCATAAGAAGGTTCAATTGCAGAGCAGTGAGGAAAGCCCAGATCCCTGCTAGCCTTAGGGACTCCTGTTCGTTTATGTGATAATGACAAACAGCACAGGACATATCTTACCTTGGTACCATCTGCGTGTGCCTTAGACAATTTCTCTGACTATCGCTGTCATTCATTCATGCAATTTTGTGTGTTGTAAATCTCTTCTACAGAACAGTTGCTTTCTTTCAGGACACTGCTCTAACACCAAGATCTACCAGATGACAATCATCATGTATTGTTGTTACTTGACATTAAAGTGGATATACTGGGGGCTTTCAAACTCTGTGCCGACATTGATAGAAttaaataataatactttttgggGGGGGTCTTATTTGTCCTGTTGCACACAAGTGTGTAATAGAAACGTGTTTGTTGCATATCCCAACTGCCCCTAAGACACCCTCAgtgagtggggtcacggccagggtcaccattGTCCAGCTCCCCTGGGGCAATTGGGTTAAGCACCTTGCTCAGGGGCCCAGCAACAGATTtctttcaccttgtcggctccggGATTCAACCCAGTGACCTTTCAGTTGCTGGCCCAACACTGTAACCCcgaggctacctgctgcccaatTCTGAAACAGTCCCAAATCCCTCGCTAAAGCAAGTGCAGAAGCCTGCAACTAACTCATTGCCATGTGACCAAACTCTTGGGGTTGTTTTTACAGATCCAGATTATGCCTAGTCCTGGATCATAACATACTTTCAACAATCTCTTCAACAAGAATGATTTTGAATCCAGGACTAGGTTTAACCTGTATTCGGGAAACCGGACCCTGGTATTTTCGTTTGAGATGTTTTGTCAGGCCTAATGTTAGGTTGTTAATCAGAGCAATGAACTAAAGGGACATACTGTCCAACA
>TU629281
GTCCTAGTCCTGTTCAACACATATATCCATAATCTTTGTCGTGGCTCAATGTTATTACTTTGTTAAACCTAAAATGTCTAAACTACATTCGTTGAATGCGTTTCTTACTGCCCGATTAACTGCGGCTGCTGTGGATATATTCGGGGCAGTGGAGAAGACTATAACAGCGTACCAGGAAGAAGTCTCCAGATCAAAAGTGGAGAACGACCATCTACGGAGGCTGTTGCTAGATTTCGGTTTCAAACCTGATAGAGAATCACAAATACCAGACCCCCAGCagctcactgtctctgtctctggagaGGAGGTTCCCTCTAAGCAGGAGTGGAGTGATCAAGAGGACACAGAGACCATATTCATTCCCCCCTGTGTGGAAAGTGCCAGTGATCAGGACTCACCCCAGAGCTCATACCTTTACCAAATTGGGAAGAACAGCAAGAGGGACTCTCTTCCCACCAACTCAACAGAACCGATCAAAACCAATCACGATGGAGAGGACTACGGGGCATCAGAATCAACCAGTAACTCTCAGACCATGTCAAAGTCAAAACATACACAGGCAAAGAAAGGACAAAGTCCTCTTGACACTGGgataaccagtgagctgagagcACCAATGGTGGCTCACACAGGTGATAGAC

Function

NR:

description
putative zinc finger protein 705E, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981330.1 False 1971 mRNA 0.46 2 86350925 86353193
TU629281 True 641 TUCP 0.47 2 86350946 86351884

Neighbor

gene id symbol gene type direction distance location
LOC110526100 LOC106593965 coding upstream 1864 86346481 ~ 86349061 (+)
LOC118965051 NA coding upstream 27422 86322244 ~ 86323503 (+)
LOC118964953 LOC106594589 coding upstream 59040 86171652 ~ 86291885 (+)
LOC118965088 NA coding upstream 281119 86069288 ~ 86069806 (+)
LOC110526731 LOC107719794 coding upstream 393744 85934678 ~ 85957181 (+)
LOC110526102 LOC106587651 coding downstream 645 86353838 ~ 86366007 (+)
LOC110526995 LOC106587650 coding downstream 12952 86366145 ~ 86383561 (+)
LOC110526916 LOC106587652 coding downstream 36166 86389359 ~ 86412050 (+)
LOC110526739 LOC106562664 coding downstream 81660 86434853 ~ 86439258 (+)
LOC118964957 LOC106587654 coding downstream 99914 86453107 ~ 86480827 (+)
G555344 NA non-coding upstream 6594 86343598 ~ 86344331 (+)
G555334 NA non-coding upstream 29825 86320778 ~ 86321100 (+)
G555327 NA non-coding upstream 41676 86308978 ~ 86309249 (+)
G555324 NA non-coding upstream 54375 86296237 ~ 86296550 (+)
G555192 NA non-coding upstream 57044 86292078 ~ 86293881 (+)
G555399 NA non-coding downstream 72030 86425223 ~ 86425608 (+)
G555400 NA non-coding downstream 72506 86425699 ~ 86425904 (+)
G555407 NA non-coding downstream 101595 86454788 ~ 86455005 (+)
G554907 NA other upstream 536622 85812645 ~ 85814303 (+)
LOC110526726 pax6 other upstream 544781 85781791 ~ 85806164 (+)
G554423 NA other upstream 1125761 85224762 ~ 85225164 (+)
G555405 LOC106587654 other downstream 96651 86449844 ~ 86450612 (+)
LOC110526767 LOC106587658 other downstream 188158 86534461 ~ 86544504 (+)
G555456 NA other downstream 215880 86569073 ~ 86570234 (+)
G556150 LOC106562774 other downstream 943325 87296518 ~ 87296986 (+)
LOC110526997 glce other downstream 1684941 88038097 ~ 88121871 (+)

Expression


Co-expression Network