LOC118964957 (LOC106587654)


Basic Information

Item Value
gene id LOC118964957
gene name LOC106587654
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 86453107 ~ 86480827 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981337.1
GAGAGAAAATCCCAAACTGCTCTGTGGAGATCCTGACAGAGACTTCAATGTCTAGAGCCTCTGATGTTGAAAGGATTTTGCTCAGTCTGCCTCCGTTCATCAAAACATTCCCTCAGTGGGCTTCATCTGGACTTGTGACTGGCCAAAATTTTCAGATTGTTCTCGATGACACATTTGCCAAGATGAACGAAGAAGTGAAAGAATACGTTAATCTGACTGTGACTCCAGCATTACAGTTGAAGGATGTTGGAGTATGTGGGCCATGTCTCGTCTTCTTGGAAGAAAATAACCTTGGTGTTTACATCTGTAAACAAAAAGGATCTCCTCAGGATATCTACGTTTTTGATTGTTTAGCTATGAAATTCAAAACGTTGAACGTGGACGAGTTGGCAAATGTAATGAGAGACATCAGAAGTGACCTGACCTTCATGACCACCAGGACTCCTAAAGAGGCCATACTGGTGCTAGTGGATTCAAGCTCCTCCATGAATGAGACATGCTATGATTCCGATGACAACATGACACGGTTGGATGCTGTTAAACAGCTCTTTGATAACTTCGCAACTAGAAGCATGGCGTACAATTTTCATCATGTCATTGGCTTGGTGAAGTTTGACTCATCAGTTAAAACTCTCCACACATTTACAGAGACTCTGGAGACCTTCAAGGAACACGTACACAATCTGGAGGCCAATGGATGCACTGTGCTGTATGATGCCTTGAAACGTGGCATGTCTCAACTGAAACAAGTTGGAGAGCAATTTCCAGACTGCAGACTTCGCATCATATGTCTCACAGATGGGAATGATGATGGATCAATGACCGAACCAGATGCTGTCACAACCAAACTGATGAGCCTGAACATTGTTGTTGATGCCATCGTTGTTGGAAAGGTGGACAACAACGTGCTGCGTGGAATCAGCAATGCAACAGGAGGGTGTTGTTTCAAACCAGAGACGAGTAAAGCTGGTCTGAAGCTTTTTGAAATGGAAACTGTTCTGTCTTTGGAGATGAGGAAGCTGAAGAAGAAACTGGACCCATCCTACATTAGGAGCGAGAACATTCTAGTTGCTCTCTTCGCCAACCGGGGTTATGACGAGAAGCCAGAGGTTGCTCTGCCAAGTGGACTAAACGATAAAGTGACTGGGACAGAGAATGCATTAAAAAAGAAGATCCAGGAATCCAAGAGCGGACGCTTTTTGGAGAAGGACAAACGCCTTCTGGAAGAGCTGAAGAGCCTGCACTGTGACCCACACCCATTCTGCACTGTTCTGCCTTCAGAGTCAGACTTTACGTTTTGGAAGATTCTCATGGAAGGCCCTCCTGATACACCTTATGAGGATGGAGTCTTTGAGCTGTACTGTCAGTTTGGAGCTGACTACCCTGTCAAACCTCCACTTGTGCGCTTTGTCACACCTGTGTACCACTGCAACATAAACAGTGTGGGTCGTATCTGCCACAACATATTTGACCGCAGCTACAACGCTCACATAACCATGAGAGAGATCTTGGATGCTGTATATGGAGTGCTCATCGTTCCTGAACCCCAAGATCCACTGGACAGTATTTTGGCAGAGGAATACCTGACCAGCAGAAACAAGTATGAAGAAGAGGCCAAGAAGAACACAGAGGAAGTAGCAGGCCAATCATTGGATGACATGGAGAAGGAATTGTTGGGTGAAGAGTTGACTGAGAAGTTCATACCCTCACACTTGATTTGTCCACTAACCAACAAGATGTTTGTTGACCCAGTGAAGAACCAGGAGGGAACAGTGTACGAGCGAAAGGCCATTGAGAAACATCTGAAGAGGACATGGCTTGGAACTGATCCCAAGACAAACCAGTTACTGACATTAACTGACCTCAAGCCATACCAAGACATGAGAAAAATGGCGAGGGACTATCGCAAACAGCAAATTCAGTAGACAGATGTTTAAAACACAATGTGATAGCCTAAATTTAGCATTCCTGCCTTGTAGCCTACACCTTTTGGTGAAACAGGATGATGATGTTGGAACAAACATTGAAGTATGCTAACAATTGTATGTAACTGATATTTGTACTGACATTTTCTAGAGGGAATAGGTCTTCATTTTCTTGGGGTTTGTActtgattataaactgggtggatcgggccttgaatgctgattggcttacagccgtggtatatcagaccgtataccacgtgtatgacaaaacatttatttttactgctctaattacgttggtaaccagttt
>XM_036981338.1
GAGAGAAAATCCCAAACTGCTCTGTGGAGATCCTGACAGAGACTTCAATGTCTAGAGCCTCTGATGTTGAAAGGATTTTGCTCAGTCTGCCTCCGTTCATCAAAACATTCCCTCAGTGGGCTTCATCTGGACTTGTGACTGGCCAAAAATAACCTTGGTGTTTACATCTGTAAACAAAAAGGATCTCCTCAGGATATCTACGTTTTTGATTGTTTAGCTATGAAATTCAAAACGTTGAACGTGGACGAGTTGGCAAATGTAATGAGAGACATCAGAAGTGACCTGACCTTCATGACCACCAGGACTCCTAAAGAGGCCATACTGGTGCTAGTGGATTCAAGCTCCTCCATGAATGAGACATGCTATGATTCCGATGACAACATGACACGGTTGGATGCTGTTAAACAGCTCTTTGATAACTTCGCAACTAGAAGCATGGCGTACAATTTTCATCATGTCATTGGCTTGGTGAAGTTTGACTCATCAGTTAAAACTCTCCACACATTTACAGAGACTCTGGAGACCTTCAAGGAACACGTACACAATCTGGAGGCCAATGGATGCACTGTGCTGTATGATGCCTTGAAACGTGGCATGTCTCAACTGAAACAAGTTGGAGAGCAATTTCCAGACTGCAGACTTCGCATCATATGTCTCACAGATGGGAATGATGATGGATCAATGACCGAACCAGATGCTGTCACAACCAAACTGATGAGCCTGAACATTGTTGTTGATGCCATCGTTGTTGGAAAGGTGGACAACAACGTGCTGCGTGGAATCAGCAATGCAACAGGAGGGTGTTGTTTCAAACCAGAGACGAGTAAAGCTGGTCTGAAGCTTTTTGAAATGGAAACTGTTCTGTCTTTGGAGATGAGGAAGCTGAAGAAGAAACTGGACCCATCCTACATTAGGAGCGAGAACATTCTAGTTGCTCTCTTCGCCAACCGGGGTTATGACGAGAAGCCAGAGGTTGCTCTGCCAAGTGGACTAAACGATAAAGTGACTGGGACAGAGAATGCATTAAAAAAGAAGATCCAGGAATCCAAGAGCGGACGCTTTTTGGAGAAGGACAAACGCCTTCTGGAAGAGCTGAAGAGCCTGCACTGTGACCCACACCCATTCTGCACTGTTCTGCCTTCAGAGTCAGACTTTACGTTTTGGAAGATTCTCATGGAAGGCCCTCCTGATACACCTTATGAGGATGGAGTCTTTGAGCTGTACTGTCAGTTTGGAGCTGACTACCCTGTCAAACCTCCACTTGTGCGCTTTGTCACACCTGTGTACCACTGCAACATAAACAGTGTGGGTCGTATCTGCCACAACATATTTGACCGCAGCTACAACGCTCACATAACCATGAGAGAGATCTTGGATGCTGTATATGGAGTGCTCATCGTTCCTGAACCCCAAGATCCACTGGACAGTATTTTGGCAGAGGAATACCTGACCAGCAGAAACAAGTATGAAGAAGAGGCCAAGAAGAACACAGAGGAAGTAGCAGGCCAATCATTGGATGACATGGAGAAGGAATTGTTGGGTGAAGAGTTGACTGAGAAGTTCATACCCTCACACTTGATTTGTCCACTAACCAACAAGATGTTTGTTGACCCAGTGAAGAACCAGGAGGGAACAGTGTACGAGCGAAAGGCCATTGAGAAACATCTGAAGAGGACATGGCTTGGAACTGATCCCAAGACAAACCAGTTACTGACATTAACTGACCTCAAGCCATACCAAGACATGAGAAAAATGGCGAGGGACTATCGCAAACAGCAAATTCAGTAGACAGATGTTTAAAACACAATGTGATAGCCTAAATTTAGCATTCCTGCCTTGTAGCCTACACCTTTTGGTGAAACAGGATGATGATGTTGGAACAAACATTGAAGTATGCTAACAATTGTATGTAACTGATATTTGTACTGACATTTTCTAGAGGGAATAGGTCTTCATTTTCTTGGGGTTTGTActtgattataaactgggtggatcgggccttgaatgctgattggcttacagccgtggtatatcagaccgtataccacgtgtatgacaaaacatttatttttactgctctaattacgttggtaaccagttt
>TU629354
GAAAATCCCAAACTGCTCTGTGGAGATCCTGACAGAGACTTCAATGTCTAGAGCCTCTGATGTTGAAAGGATTTTGCTCAGTCTGCCTCCGTTCATCAAAACATTCCCTCAGTGGGCTTCATCTGGACTTGTGACTGGCCAAAATTTTCAGATTGTTCTCGATGACACATTTGCCAAGATGAACGAAGAAGTGAAAGAATACGTTAATCTGACTGTGACTCCAGCATTACAGTTGAAGGATGTTGGAGTATGTGGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981337.1 False 2238 mRNA 0.44 15 86453107 86480827
XM_036981338.1 False 2101 mRNA 0.44 14 86453107 86480827
TU629354 True 256 lncRNA 0.44 2 86453111 86453464
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110526739 LOC106562664 coding upstream 13849 86434853 ~ 86439258 (+)
LOC110526916 LOC106587652 coding upstream 41057 86389359 ~ 86412050 (+)
LOC110526995 LOC106587650 coding upstream 69546 86366145 ~ 86383561 (+)
LOC110526102 LOC106587651 coding upstream 87100 86353838 ~ 86366007 (+)
LOC118964955 LOC106592958 coding upstream 99914 86350925 ~ 86353193 (+)
LOC110526773 LOC105014000 coding downstream 32786 86513613 ~ 86526922 (+)
LOC110526767 LOC106587658 coding downstream 53634 86534461 ~ 86544504 (+)
LOC118964958 senp8 coding downstream 715954 87196781 ~ 87199100 (+)
LOC110526759 LOC106562792 coding downstream 1214172 87694999 ~ 87697581 (+)
st3gal-i st3gal-i coding downstream 1268229 87749056 ~ 87759565 (+)
G555400 NA non-coding upstream 27203 86425699 ~ 86425904 (+)
G555399 NA non-coding upstream 27499 86425223 ~ 86425608 (+)
G555344 NA non-coding upstream 108776 86343598 ~ 86344331 (+)
G555334 NA non-coding upstream 132007 86320778 ~ 86321100 (+)
G555415 NA non-coding downstream 4850 86485677 ~ 86486549 (+)
G555418 NA non-coding downstream 9579 86490406 ~ 86490709 (+)
G555428 NA non-coding downstream 29020 86509847 ~ 86510892 (+)
G555429 NA non-coding downstream 31124 86511951 ~ 86512422 (+)
G555439 NA non-coding downstream 51940 86532767 ~ 86533482 (+)
G555405 LOC106587654 other upstream 2495 86449844 ~ 86450612 (+)
G555192 NA other upstream 159728 86292078 ~ 86293881 (+)
LOC118964953 LOC106594589 other upstream 161897 86171652 ~ 86291885 (+)
G554907 NA other upstream 638804 85812645 ~ 85814303 (+)
G555456 NA other downstream 88246 86569073 ~ 86570234 (+)
G556150 LOC106562774 other downstream 815691 87296518 ~ 87296986 (+)
LOC110526997 glce other downstream 1557307 88038097 ~ 88121871 (+)
LOC110526780 LOC106562699 other downstream 1668255 88149054 ~ 88168508 (+)
G555407 NA non-coding downstream 1324 86454788 ~ 86455005 (+)
G555410 NA non-coding downstream 15371 86468835 ~ 86469041 (+)
G555411 NA non-coding downstream 15974 86469438 ~ 86469682 (+)
G555412 NA non-coding downstream 16525 86469989 ~ 86470294 (+)

Expression

LOC118964957(LOC106587654) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 12.
End of interactive chart.

LOC118964957(LOC106587654) Expression in each Bioproject

Bar chart with 21 bars.
LOC118964957(LOC106587654) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.

Co-expression Network