LOC110506961


Basic Information

Item Value
gene id LOC110506961
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 86947442 ~ 86965625 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981369.1
GCCTCCTGCGCTGTCAAGATGGCGGACGAAGAAAACACACTAACTGTGAGGATAATTTACTTGCTATGAATTGGAATTACAATGctCCCAGTGGCCTCTGAGACGAAGAAACGGCAAGCTCCAAAAGctCCGGAACTTCCCATTCTGGAGAGGAGGAACTGGCTCATCCACCTGCACTACATCCGCAAAGACTATGAGACCTGCAAGGCAATGATCAAAGAGCAGCTACAGGAGACCCAGGGAATGTGTGAATATGCCATATACGTACAAGCGCTAATCTTGCGTCTGGAGGGGCAGATCCAGCCATCCCTGGAGCTGTTCCAAAGTTGTGCCATCCTCAATCCCACCAGCCCCGACAACCTCAAACAAGTGGCTCGATCGCTTTTTCTGTTGGGGAAACACAAGGCAGCCATTGAGGTTTATCAGGAAGCTGGGAAGCTCAATGAGAAAGACTGGGAGATCAACCATAATCTGGGTGTATGCTATTCCTTCATAAAAGACTTCCAAAATTCTGAAGAGCAGTTGAATGCAGCCCTGCAGTTGAAAAAACACGACAGGACATTCATGACACTGGGAAAGGTCCACTTGTTGGCGGGAGACACGGACAAAGCCATCGAAGTGTACAAGAGTGCAGTGGAGTTCTCTCCAGAGAATGCCGAGTTGCTGACCACTCTGGGGCTCCTGTATCTGCAGTTGGGAAAATACCAAAAAGCATTTGAACATCTCGGGAATGCACTTACTTATGACCCTAATAACTATAAGGCCATCCTGGCAGCAGGCAGTATGATGCAGACCCATGGGGACTTTGATGTGGCCATGAACAAGTACCGCGTGGCAGCGTGCATGGTCCCCGAGAGCCCCCCGCTCTGGAACAACATCGGCATGTGCTTCTTTGGCAAGAAGAAATATGTAGCAGCCATCAGCTGCTTGAAGCGGGCCCACTACCTGTCTCCGTTTGACTGGAAGGTACTGTACAACCTGGGCCTGGTGCACCTCACCATGCAGCAGTATGCCTCTGCCTTCCACTTCCTCAGCGCTGCCACCAACCTGCAGCCCCACCTGGGAGAACTCTACATGCTACTAGCAGTTGCACTGACCAATCTGGAGGACGTGGACAATGCCAGGAGATCCTATGAACAAGCTGTGGCTTTAGACCAGTCCAACCCTCTGGTCAACCTGAACTTTGCCATTCTGCTGTACAACCACGGGGACAAGAAGGGAGCCCTGCAACAGTACCAGGAGATGGAAAGGAAAGTCAACATACTGAAGGACAGCAACACTGAGTTTGACCCTGAGCTAATGGACATGGCTCAGAAGATGGCCGCTGCCTTGCAGGTGGGAGAGAGCCTGGAGTGGACCAAGCCGGTCAAAGACCCCAAGTCTAAGCAGCGCTCAGCTGGGGCCCCCAGTAAAACTCCTGGCAGCTCCCAGCAGCCCCTAGGCACCAACCAGGCCCTGGAGCAGGCCATGTCCTCCGCCGCAGGCTACAACAAGAGCATCTCACTCCCCACAGGAGTGTCCCCCCACAGCCAGCCCACGCCCCCTTCCCTGGCCTTGGAGGAGGAGCCTGATGTGGAGACCACCCCCACCCGAGCCCCTCAGCCAGAAGAGTCAGACCCCTCCACCACCATGCCCCCTCTGGCAGCCAAACCCAAAGTCAAGAAGAACAAGTTGAAGCAAGAGCTGAACTAGACTAGACGTCCCATATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCGGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCGGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCTTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCGGTAGTGTATCATCACTCCCAGAATGTCACTCAGTTTATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCGGTAGTGTATCATCACTCCCAGAATGTCACTCATCTTATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCATTTTATCTAGTCCACAGGCCTGTAGTGTATCCTCACTCGGTCTCTATCCGTTTTAGTTTTCATCAAGAATAGTTAGTCGAAGGCCACAAGGCCTTGACTAGCTTCTTGATTTAGCTTGTTACAAAGTGCTTTATGTTGCTCTTTCTTAATGGTCTTACTAACCAAGGTGAGCCAGCCTAATGACAGAGGTGTCATAATGAGTTGACTTCCTGATCATCAAAGGCCTTGACATGATCTCTTTTCAGTAGTTTCAGATACTTACTCTGTTCAACTTTCTCTATTGGGCCATGTCAAATACAGCATAtgattatttaatttttttacttaGCCTTGGTCAGTGGCAGGTCTGGATTATCGTTTATAATGACACTAAATATACATTCCTCCATTTTAAGTAACCTATAAGATATGACAATCATGAATGAGATGTGGGAAATAAAGATTGTAGTGTTTTATACCTAATATATAGATTTATCAAGggcctttttttttaaactattgttGAATTTTAAGATGTTTAGAAATTATGATGTTTGACAGAATAGATGTGTATTTATTGTTGCAAAATCCAAAGTGCCGTGAAGGTGATTGATAGTGTTCTGCTCTTTATTTTAGTCAGAGTAGTGTTAGGCTAAATGCGACACGGTTGGCTGGGTAAACCATGCTAGCGTGATGAGTAGCCTTGTCTGAGACTAAAGACTTGACTTAGCTCCCCAAGCTAAGGCCTAGACGTTTAGCTCAGCGGCTAACAGTTGTGGCACGCAGAAGacttgtgtaagtgtgtgtgaacatgcatgtaatatacaggtaactgactaAATAAACGATacatcaaattaaa
>XM_036981368.1
AAGGGTAGATTTAGTGCAGTTTAACTTATTTTAGTGtttagtaattggtagcttggtaaactatattttcagagtaattTCCCCAACCCTGCAGTGCCAGAGATGATAGAAACAGAAGTCCTTCATAATCTAGCTACTGGTAAAGCTTTTTGAAACAGAGCTCAAAAATACCCCGTTCTAGCGTAACCATGGCAACAGCCTCCTGCGCTGTCAAGATGGCGGACGAAGAAAACACACTAACTctCCCAGTGGCCTCTGAGACGAAGAAACGGCAAGCTCCAAAAGctCCGGAACTTCCCATTCTGGAGAGGAGGAACTGGCTCATCCACCTGCACTACATCCGCAAAGACTATGAGACCTGCAAGGCAATGATCAAAGAGCAGCTACAGGAGACCCAGGGAATGTGTGAATATGCCATATACGTACAAGCGCTAATCTTGCGTCTGGAGGGGCAGATCCAGCCATCCCTGGAGCTGTTCCAAAGTTGTGCCATCCTCAATCCCACCAGCCCCGACAACCTCAAACAAGTGGCTCGATCGCTTTTTCTGTTGGGGAAACACAAGGCAGCCATTGAGGTTTATCAGGAAGCTGGGAAGCTCAATGAGAAAGACTGGGAGATCAACCATAATCTGGGTGTATGCTATTCCTTCATAAAAGACTTCCAAAATTCTGAAGAGCAGTTGAATGCAGCCCTGCAGTTGAAAAAACACGACAGGACATTCATGACACTGGGAAAGGTCCACTTGTTGGCGGGAGACACGGACAAAGCCATCGAAGTGTACAAGAGTGCAGTGGAGTTCTCTCCAGAGAATGCCGAGTTGCTGACCACTCTGGGGCTCCTGTATCTGCAGTTGGGAAAATACCAAAAAGCATTTGAACATCTCGGGAATGCACTTACTTATGACCCTAATAACTATAAGGCCATCCTGGCAGCAGGCAGTATGATGCAGACCCATGGGGACTTTGATGTGGCCATGAACAAGTACCGCGTGGCAGCGTGCATGGTCCCCGAGAGCCCCCCGCTCTGGAACAACATCGGCATGTGCTTCTTTGGCAAGAAGAAATATGTAGCAGCCATCAGCTGCTTGAAGCGGGCCCACTACCTGTCTCCGTTTGACTGGAAGGTACTGTACAACCTGGGCCTGGTGCACCTCACCATGCAGCAGTATGCCTCTGCCTTCCACTTCCTCAGCGCTGCCACCAACCTGCAGCCCCACCTGGGAGAACTCTACATGCTACTAGCAGTTGCACTGACCAATCTGGAGGACGTGGACAATGCCAGGAGATCCTATGAACAAGCTGTGGCTTTAGACCAGTCCAACCCTCTGGTCAACCTGAACTTTGCCATTCTGCTGTACAACCACGGGGACAAGAAGGGAGCCCTGCAACAGTACCAGGAGATGGAAAGGAAAGTCAACATACTGAAGGACAGCAACACTGAGTTTGACCCTGAGCTAATGGACATGGCTCAGAAGATGGCCGCTGCCTTGCAGGTGGGAGAGAGCCTGGAGTGGACCAAGCCGGTCAAAGACCCCAAGTCTAAGCAGCGCTCAGCTGGGGCCCCCAGTAAAACTCCTGGCAGCTCCCAGCAGCCCCTAGGCACCAACCAGGCCCTGGAGCAGGCCATGTCCTCCGCCGCAGGCTACAACAAGAGCATCTCACTCCCCACAGGAGTGTCCCCCCACAGCCAGCCCACGCCCCCTTCCCTGGCCTTGGAGGAGGAGCCTGATGTGGAGACCACCCCCACCCGAGCCCCTCAGCCAGAAGAGTCAGACCCCTCCACCACCATGCCCCCTCTGGCAGCCAAACCCAAAGTCAAGAAGAACAAGTTGAAGCAAGAGCTGAACTAGACTAGACGTCCCATATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCGGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCGGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCTTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCGGTAGTGTATCATCACTCCCAGAATGTCACTCAGTTTATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCGGTAGTGTATCATCACTCCCAGAATGTCACTCATCTTATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCAGCTTATCTAGTCCACAGGCCTGTAGTGTATCATCACTCCCAGAATGTCACTCATTTTATCTAGTCCACAGGCCTGTAGTGTATCCTCACTCGGTCTCTATCCGTTTTAGTTTTCATCAAGAATAGTTAGTCGAAGGCCACAAGGCCTTGACTAGCTTCTTGATTTAGCTTGTTACAAAGTGCTTTATGTTGCTCTTTCTTAATGGTCTTACTAACCAAGGTGAGCCAGCCTAATGACAGAGGTGTCATAATGAGTTGACTTCCTGATCATCAAAGGCCTTGACATGATCTCTTTTCAGTAGTTTCAGATACTTACTCTGTTCAACTTTCTCTATTGGGCCATGTCAAATACAGCATAtgattatttaatttttttacttaGCCTTGGTCAGTGGCAGGTCTGGATTATCGTTTATAATGACACTAAATATACATTCCTCCATTTTAAGTAACCTATAAGATATGACAATCATGAATGAGATGTGGGAAATAAAGATTGTAGTGTTTTATACCTAATATATAGATTTATCAAGggcctttttttttaaactattgttGAATTTTAAGATGTTTAGAAATTATGATGTTTGACAGAATAGATGTGTATTTATTGTTGCAAAATCCAAAGTGCCGTGAAGGTGATTGATAGTGTTCTGCTCTTTATTTTAGTCAGAGTAGTGTTAGGCTAAATGCGACACGGTTGGCTGGGTAAACCATGCTAGCGTGATGAGTAGCCTTGTCTGAGACTAAAGACTTGACTTAGCTCCCCAAGCTAAGGCCTAGACGTTTAGCTCAGCGGCTAACAGTTGTGGCACGCAGAAGacttgtgtaagtgtgtgtgaacatgcatgtaatatacaggtaactgactaAATAAACGATacatcaaattaaa

Function

NR:

description
Bardet-Biedl syndrome 4 protein-like isoform X1

GO: NA

KEGG:

id description
K16531 BBS4; Bardet-Biedl syndrome 4 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981369.1 False 3497 mRNA 0.48 16 86947442 86965428
XM_036981368.1 True 3655 mRNA 0.47 16 86947442 86965625

Neighbor

gene id symbol gene type direction distance location
LOC110506206 neo1 coding downstream 117686 86614790 ~ 86829756 (-)
LOC110506964 LOC106562409 coding downstream 335201 86602667 ~ 86612241 (-)
LOC110506207 LOC106562785 coding downstream 345044 86556823 ~ 86602398 (-)
LOC110526766 LOC106562456 coding downstream 392340 86550266 ~ 86555102 (-)
LOC118965097 NA coding downstream 394751 86552564 ~ 86552691 (-)
LOC110506960 LOC106562779 coding upstream 6199 86971824 ~ 86981256 (-)
LOC110506954 LOC106562777 coding upstream 18939 86984564 ~ 87196696 (-)
LOC110514547 LOC106562775 coding upstream 259058 87224653 ~ 87258522 (-)
LOC110506202 LOC106562774 coding upstream 297972 87262460 ~ 87359594 (-)
LOC110512518 trip4 coding upstream 400727 87366352 ~ 87453975 (-)
G555999 NA non-coding downstream 1341 86945443 ~ 86946101 (-)
G555998 NA non-coding downstream 6126 86940975 ~ 86941316 (-)
G555829 NA non-coding downstream 7158 86939956 ~ 86940284 (-)
G555808 NA non-coding downstream 61213 86886028 ~ 86886229 (-)
G555799 NA non-coding downstream 66744 86880410 ~ 86880698 (-)
G556015 NA non-coding upstream 27188 86992813 ~ 86993250 (-)
G556021 NA non-coding upstream 45657 87011282 ~ 87012444 (-)
G556024 NA non-coding upstream 55589 87021214 ~ 87021555 (-)
G556026 NA non-coding upstream 57361 87022986 ~ 87023273 (-)
G556065 NA non-coding upstream 153396 87119021 ~ 87119628 (-)
G555617 NA other downstream 489477 86455124 ~ 86457965 (-)
LOC110526741 NA other downstream 499888 86439615 ~ 86447991 (-)
G555606 NA other downstream 509540 86434941 ~ 86437902 (-)
G555590 LOC106587652 other downstream 554382 86392747 ~ 86393060 (-)
LOC110506939 LOC106596505 other downstream 1191093 85741675 ~ 85779604 (-)
LOC110506946 LOC106562772 other upstream 492352 87456447 ~ 87498104 (-)
LOC110513865 LOC106562791 other upstream 580964 87546236 ~ 87693072 (-)
LOC110526751 LOC106562707 other upstream 807622 87773201 ~ 87860425 (-)
G557663 NA other upstream 2193599 89159224 ~ 89159885 (-)
G558051 NA other upstream 2655723 89621348 ~ 89621755 (-)

Expression


Co-expression Network