LOC110506962 (LOC106562712)


Basic Information

Item Value
gene id LOC110506962
gene name LOC106562712
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 86963073 ~ 86965327 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471074.2
TGCACTGTTTTGGATATAACTAGCTGGGATGTTTGTTGTTAGCAGTGTAATATGTCTAGAAACGTCTTGCTTAGCATTCTCCAGCTCTAGCTAGCTGAAAACATAGCAGCTAGCTAACGACTAGCTTGTTAATGCTAATAAAGTCATTACAGCAGTAATTGTTGACGTTACAGCTCCGTATGGGGCCATGGCTAAAAAAGGGATCCatcttttgtcaaattaacgtcaAAAGTTGGAAGGTTTTGCAttttaactaaccctaaccccttaccTAATCTTAACCTAATTATCACAACATGCTACATTAACAGGTTTTGTTTAGCTCGATAATTAGCTAAACTCACGAAATCAAGGAGTATGCCTTTATTCCATCTGTCGATAATTAGTGTACATTCAATTCAAATAGTTCAATGATTTATCTTGCGTTCTTAATGACGACCAATATTACTGGACGCCACAAGCAGATGTGAAGTCGTCATTGCTAGTCGGCGACACGTTGTTATTGTTGGACAGCAAACATGGCGGATGAAAGTGTTGCTGGAGCCAGCCTTATTAAGGTACTTTCGTTACTGCATTTGGTAAATAATGCTGTAGTGAAATTGCAATAGAGCATGCCGAGTCTACTTTCTAGTTGTCAGAATAATTTCACTCAAAATATACGCCTGAGCAGACAACGGTATGACGTTGAACGACAGCACAGACGACGACGGTTTTTGCGTTTACGCGCTACAACCACTATATGTACTGACGAAAGAAGCAGCAATCGAGGATGCAACATGCTTTCGAGGTGTGTGGGAGCGGGGTCCAAGACCCGGTGAAGATGTTTGCAGTATGATGTTGGATGATTTTGACGACGATCAAAGGCGCAAACAGTTCCGCATGACTCAGACCACATTTGAACACCTTGCACAGTTAGTAGAGTCTGGGAACTAAACAAACCACCAATGTCTGAAACACAATTGAATACCGTCGAAGGTTTGCTCTATTTTTGGTGGTGGTGTGCAACACCAAGCGAGCACCAGATTATTTAAAGTTTATTTGGAGGCGGTGTTTCCACTGTTTGCATCATTCTACGACAGGTGACTGCACCTGTCGTGAAGACAAGTACAACCGCTTTATTTCGCTACCCGGTGGTAAAGACATCCTAGCCACCATCTGTGGGTTTAAGCAGCTTGGGTATCCGCAATGTGCTGGTGACCATGGTTGAGACACACATCCCCATCACTGCCTCAAAATAATATCCAAAGGACTACTTGAACAGCAAAGGGCAGCATTATTCTGTGTTACAGGCCGTTGCTGATCACAACCTCAGAGTTCAGCGATTGTCATTGGTGTAGAGATGCCAGTTCATCCGGTAGGAGACCCAGCGTACCCACTGAAGAGGTGGTTAATGACAGGCTTTTCCCAGGTCACATCTCTGAATAACCACCAGCAGAAGTTTAATGACCACCTGAGTTCTGCCAGGGTGGCTATTGACTACGTCTTAGGATGCTTGAAGGGACGTTTGGTGAAGTGCATCAACATTGACGTTAAGTTGACGACAGACACTGTAACGCCGTGTTGCATACTGCACAATGTGTGCGAACTGAAGAAAGAATTGTTTCTGGCATGAATGAAACATTGGCCAAGATCAGTTGTAGAAAGAACAGTTTCTGGCTGAATGGAACCGGAACATCATTGGCCAGGATCATCAGCAGACAGAGGCTAAGCTCACAGATCAAGACCATAGTTTACTACAAGGGCCAGTGGAGGACAATGTTGCTACTGTACGGGATGCAATTAGGGCCTCTTTACATGACACCATCATAACCGTGCACTGATGTTTTAGCCTTGTGGTGCAAGTTGTTTGTGATTAGTGCCAAGTACCGCGGTGCTCAAGTTGTGGctatgcaa
>TU630038
AAACATGGCGGATGAAAGTGTTGCTGGAGCCAGCCTTATTAAGGTACTTTCGTTACTGCATTTGGTAAATAATGCTGTAGTGAAATTGCAATAGAGCATGCCGAGTCTACTTTCTAGTTGTCAGAATAATTTCACTCAAAATATACGCCTGAGCAGACAACGGTATGACGTTGAACGACAGCACAGACGACGACGGTTTTTGCGTTTACGCGCTACAACCACTATATGTACTGACGAAAGAAGCAGCAATCGAGGATGCAACATGCTTTCGAGGTGTGTGGGAGCGGGGTCCAAGACCCGGTGAAGATGTTTGCAGTATGATGTTGGATGATTTTGACGACGATCAAAGGCGCAAACAGTTCCGCATGACTCAGACCACATTTGAACACCTTGCACAGTTAGTAGAGTCTGGGAACTAAACAAACCACCAATGTCTGAAACACAATTGAATACCGTCGAAGGTTTGCTCTATTTTTGGTGGTGGTGTGCAACACCAAGCGAGCACCAGATTATTTAAAGTTTATTTGGAGGCGGTGTTTCCACTGTTTGCATCATTCTACGACAGGTGACTGCACCTGTCGTGAAGACAAGTACAACCGCTTTATTTCGCTACCCGGTGGTAAAGACATCCTAGCCACCATCTGTGGGTTTAAGCAGCTTGGGTATCCGCAATGTGCTGGTGACCATGGTTGAGACACACATCCCCATCACTGCCTCAAAATAATATCCAAAGGACTACTTGAACAGCAAAGGGCAGCATTATTCTGTGTTACAGGCCGTTGCTGATCACAACCTCAGAGTTCAGCGATTGTCATTGGTGTAGAGATGCCAGTTCATCCGGTAGGAGACCCAGCGTACCCACTGAAGAGGTGGTTAATGACAGGCTTTTCCCAGGTCACATCTCTGAATAACCACCAGCAGAAGTTTAATGACCACCTGAGTTCTGCCAGGGTGGCTATTGACTACGTCTTAGGATGCTTGAAGGGACGTTTGGTGAAGTGCATCAACATTGACGTTAAGTTGACGACAGACACTGTAACGCCGTGTTGCATACTGCACAATGTGTGCGAACTGAAGAAAGAATTGTTTCTGGCATGAATGAAACATTGGCCAAGATCAGTTGTAGAAAGAACAGTTTCTGGCTGAATGGAACCGGAACATCATTGGCCAGGATCATCAGCAGACAGAGGCTAAGCTCACAGATCAAGACCATAGTTTACTACAAGGGCCAGTGGAGGACAATGTTGCTACTGTACGGGATGCAATTAGGGCCTCTTTACATGACACCATCATAACCGTGCACTGATGTTTTAGCCTTGTGGTGCAAGTTGTTTGTGATTAGTGCCAAGTACCGCGGTGCTCAAGTTGTGGctatgcaaaaaaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC106562712 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471074.2 False 1893 mRNA 0.44 2 86963078 86965327
TU630038 True 1384 lncRNA 0.46 2 86963073 86964813

Neighbor

gene id symbol gene type direction distance location
LOC110506206 neo1 coding downstream 133322 86614790 ~ 86829756 (-)
LOC110506964 LOC106562409 coding downstream 350837 86602667 ~ 86612241 (-)
LOC110506207 LOC106562785 coding downstream 360680 86556823 ~ 86602398 (-)
LOC110526766 LOC106562456 coding downstream 407976 86550266 ~ 86555102 (-)
LOC110506960 LOC106562779 coding upstream 6497 86971824 ~ 86981256 (-)
LOC110506954 LOC106562777 coding upstream 19237 86984564 ~ 87196696 (-)
LOC110514547 LOC106562775 coding upstream 259356 87224653 ~ 87258522 (-)
LOC110506202 LOC106562774 coding upstream 298270 87262460 ~ 87359594 (-)
LOC110512518 trip4 coding upstream 401025 87366352 ~ 87453975 (-)
G555999 NA non-coding downstream 16977 86945443 ~ 86946101 (-)
G555998 NA non-coding downstream 21762 86940975 ~ 86941316 (-)
G555829 NA non-coding downstream 22794 86939956 ~ 86940284 (-)
G555808 NA non-coding downstream 76849 86886028 ~ 86886229 (-)
G555799 NA non-coding downstream 82380 86880410 ~ 86880698 (-)
G556015 NA non-coding upstream 27486 86992813 ~ 86993250 (-)
G556021 NA non-coding upstream 45955 87011282 ~ 87012444 (-)
G556024 NA non-coding upstream 55887 87021214 ~ 87021555 (-)
G556026 NA non-coding upstream 57659 87022986 ~ 87023273 (-)
G556065 NA non-coding upstream 153694 87119021 ~ 87119628 (-)
G555617 NA other downstream 505113 86455124 ~ 86457965 (-)
LOC110526741 NA other downstream 515524 86439615 ~ 86447991 (-)
G555606 NA other downstream 525176 86434941 ~ 86437902 (-)
G555590 LOC106587652 other downstream 570018 86392747 ~ 86393060 (-)
LOC110506939 LOC106596505 other downstream 1206729 85741675 ~ 85779604 (-)
LOC110506946 LOC106562772 other upstream 492650 87456447 ~ 87498104 (-)
LOC110513865 LOC106562791 other upstream 581262 87546236 ~ 87693072 (-)
LOC110526751 LOC106562707 other upstream 807920 87773201 ~ 87860425 (-)
G557663 NA other upstream 2193897 89159224 ~ 89159885 (-)
G558051 NA other upstream 2656021 89621348 ~ 89621755 (-)

Expression


Co-expression Network