LOC110506960 (LOC106562779)


Basic Information

Item Value
gene id LOC110506960
gene name LOC106562779
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 86971824 ~ 86981256 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981370.1
gatttgatttgaagtgggtTACCCTTATTGGCGTGATGCGTAGGTTGTTTGCCTTCTGCTTCCCTGTCTCTCCGTTCTCTACATCGGTGTCTAAAAATGGGATGGTAGCCGTGAGGCCATCGGAACTTATGAGGGGCTAATGTGTGAGGGGCTAATGTGGTCGAAGTTTAGAGGGGGCAGTGTAGCGATCCTCACTAATATGAACAGCATTACATGTACCACCAAATGGTTTAACCCTATCGGGCATGATGCGTAGGGTGTTTGCCATTTACGCCAGAGACACAGGTTCGCTTCAATATCAAACCATTTGACATTACTTAAATAGAACCATCAAGCTTcatgtcagattacagtccagaTAATATATGCAGTGCAATATAATTAAGGCATGTTTCGTTTAAactaatactttaaaaaaaaaatgtatttatggtTACAAGCCTACCATAGCCTACAAATACTTTTCTGAACTGGTTGCAAGACATGCTTTGGTaaatgactccctgataaaataaaggttaaataaaatatcaaTGAAATGGAATCTTCACTGTACAGCTCGGAGACATGGGAGTAGGATTTAGGAAGTCACGAGAATGTCACATTTGAAACCAATTGTACCCTATTTTCTAAAAATAAAGATAATTGATTTTAAATGAACGCTCGAGACTGCCCCAGATCAGCTGACGCAGTGTGCGTATCCTGCTACGCATGCGCACTGGAAACTGTCTAACAGCACCATCAACAGACTGGGGAACAAGCAGCCAGAGGAGAGGCACAAGCTGGCGTTTTGTTTACCTCCAAAAGAAGAAGATAACATTTTCTCAACATGTCGGGATTTGACGAGAACCCATTTGTAGATGCAGTGGATGTCAATCCTTTCCAGGATGCCTCAGTCACACAAATCACCAGCGGTGGGATTGAAACCGTTGAGGAATTCAACCCATTCTCAGCCAGTGCTATGgGCACCCACACTGGGACCACCATCCCTATCTCTGCTGCCTCCTCCCAACCAGCTGTCCTACAGGCTTCTGCTGTGGAGCCCACCCCACAAGCTACTGCGGCTGCTGCCCAGGCTAACCTGCTCAGGCAACAGGAGGAGCTGGAGAAGAAAGCTGCTGAACTGGATCGGAAAGAGCAGGAGCTCCAGAACAGGCCTGGAGGCCACATTACAAAAGAAAACAACTGGCCGCCACTTCCCAAGTTTTCCCCCATAAAGCCTTGTTTCTACCAGGACTTCAATGAAGACATCCCTGAAGAGTACCAGAAGATATGCAAGAGGATGTACTACCTTTGGATGTTTCACAGTATCACACTCTTCCTGAACCTTCTGGCCTGCCTGGCCTACTTCACGGCCGATCCAAACGCGGGGGTGGACTTTGGTCTGTCCATCCTCTGGTTCGTCCTCTTCACCCCCGTCTCTTTCGTCTGTTGGTACAGGCCAGTGTACAAAGCCTTCAGGTCGGACAGTTCCTtcagcttcttcttcttcttctttgttttcTTCTTCCAAGTGTCTGTCTACATCATCCAGTGTGTGGGGATCCCCAAGTGGGGGAACAGTGGATGGATTTCGTCCATCACCATGATAAGAAGCAACATGGCTGTAGCTGTGGTCATGATGGTTGTGGCCGGCTGCTTCACTGTGAACGCTGTCCTCGCCATCATCCTACTCAAAATGGTCCACTCCAACTATCGTCGGACGGGGGCCAACTTCACCAAGGCCCAGCAGGAGTTCTCTTCGGGGGTCCTCACCAACCAGACCTTTCAGAGCGCCGCGGCCAGCGCCGCCTCCTCAGCCGCCCAGGGGGCCTTCCAAGGACGCTAGTGATCCTAAAGTCACAGGGCCAGGTTCCTCCTAACCTTTCTAGGCACCTCTCACTCACTCCAAGCCCCGTTTTGTCCCATGGCCTCAGTGTCTCTGCAGAGGCAACAGAAATGGCTGACAGGACAGAAACTAGACTGGTATACAGGAACATTACAATTTACTGCTGTATCATGGACATTCTCTAACCACAGCCATTGATGCATAATCCCAATTCAACCACTAGCCCCGTGTATTCAATGTGGTGGAAACTCTGCTAGCTGATCAGAGGGTATAAATGGAGCTATTACCATGTTGATTGGACTTATCCAAGTGTCTGGGGGGTTGGTTTGGGATTGTGGTGTCTTGCTGATATGGGGGTTTGGTTTGGGATTGTGGTGTCTAGCTGGTAAGGGGCTAGGGTTGGTTTGGGATTGGGGTGTCTGGCTGGTAGGAGGCTAGGGTTGGTTTGGGATTGGGGTGTCTAGCTGGTAGGGGGCTAGGGTTGGTTTGGGTTTTGGCACCAGAGTTTGGCAAAGTGTCCTCCATGTTGGTACCAAACATTCCATGACAATAATGTACATTTTCATTCTAAGTGGAATGTGATACTTTAAGAAAGCGAATGCGTAATCTGTCTTGCTcgtctcctgtaggttttaatgcTATTACACTATGCTCCTAGCAAATGAGGAATGCTCTCCCTAGAATACTTTACATTGTCATTTTAATCCTCACTAGAATGAAATAGTTTGGTACCAGCATGGCGCTTATCATTATGAAAACACAATCTCCAATTAAGttgtatttttattcagtatatcaATTGCGCTCTGTCCCATAGCCTAGTCTTTACCTCGTTATGTTCTCTTCTTCCTCACTGTCCTGCCCTATCCAGACACTCAGGTCCTCTTCTCAGGACATACTGTACCGTTAACGCAGAGATCTCCAACTCTAGTTGTGGAGAGCCACTGTTAGTGCAAGATTCTGTTCTTtcctaacactaacacacacgtTTCAAATACTCAACTGATCACGGTCTTCAGTCTCGACCTTGATTTTTGTTCAATCCGGTGTGTTGGTGCTAGGCTGGAACAATGCCTGCGTACCCAGTGGCTGTCCAAGACTGAAGTTGGAGATCCTTGTATTACAAGGGTTTGGGTACAAAAATGTTACCGAAGTGGGCATCTGAGGTAAAAACACTGAAATGTCTACTGAaggaattacattttattttgtgaagtTTACATTGTTGTTGAGGTTTATTTTTGCTCTGATCATAATATATTGAAGGGATGAATGGTTTTAtttcttagatttttttttgtgatttCATATTTTACTGTTCTTCAATCCCTCAGTAGGGTTGGACGTGCTGAAGTATGATAAGGCAACTGCTGTGTTTTTGTAGCTACAATAATGAAGATATTGGGTGACGGTTTAACTAAATGGGAAATCCTGTATACGCAGATGTTAGTGCACCACCGGCGGTATCCCTCCTACTGTACTTTAAAGTAACTTTCCAGTGAAAATCACACTTTTAAAAGTTCATGTTCTGTTAACTcctacccaaataatgttgttgactcatcctatactcATATTTTTGTCAAAACcataaattggagaaaaaaaacacctCCAAACAGtttaaaaaatgcttgctatttcctcagagcaggatgagctggccaatcagtggtcTACTCTCAGTAATATTTTTAATAACcggtatacgcccacaccattccaacacagaatagctgttttaaaaaaaaaaaaatatcgtacttcattatttattttaattggaAGGAAAACAATTTGTCATATTGTGCATAATTATAGGTTATATTTCATAGAAATATTAACACGGGACAGTTACTTTAATGAACATAGAACCACTTCTGTGCTGTCACCACTACATTTTGGAGTTGGTGGCTTTGGTATTATGACGTCAGGACAAGTGGGATCTTTTCTTACAAATCAGACAAAGGACGAGTTAGTTTTAAATTGACACTTAATTATTTTTTCTCTATGAATGAGATATAGACCAGTCAATGTGGGTACTGTGGCATGCTCATAGACATTTCTGGAAGATTGAATGTATTTAGTGCAAGAATAGAATATAGTTACAGCCATGTGAGAATGAGTGAGTGGATGGAGGAATGAGCTGACAGGACAAATGAATGAATGATTTGAGTAATTACATAATGATCTAAATGTATTAATGAATAGTTAGTTATTGATTGTGGATATGTGCCTAAAGTAAAGTTCAGTACAATAACCCTAAAGATTGCAGTAAACCAAGTCATGACTTCTAATACAGCAACGATCAAAAAATAGATTTACATTCTTGATTTTAGTTGTTGGGTAGTAGTTACAACACAggcatattattatttttaatgtaCGGTTGGTTACTCTACACTTTTTCTGAAATGTCACTATGCTGTCTACTGGACATTTGCAGTCTTGCTACACTACCGCTGTTTGGTTCCTGATATGTCAACTCTGATGTTATGTAGCTGACACTGGTTTACTGAGATTTATTTTTGAGCCTAAAACTCACTGAGACATGACTTTAAATGAGCCTCACCTTCTGCCTATTAACTACCATTATGATCCGTCCGTGTTCTGAATGTTTGTCCAGATACATGTGTGTTTATCTGATCCTTCTATTGGGTAGGGTACTGTTACTGGGTATTATCTAGCACAGGGGTGTCCAACCCATCTTCTGGAGAGCTACtgagtgtgcaggcttttgttttaGCCCTGCTCTAACACCTAATTCAACTGCTCATCAGGGCCTTGCATGACTAGCTGATAGCTTCTGATTTGGTCGAATCAAGTAGGGATGGAATGGAAGCCTGCACAgtgcacacccagtagctctccaggatggctgtccttctggaggTCAAGGGTCAAATCTGTTTGTCACTGTACATATGTCTGACATGTTACAAAGCTGTTATTTTGTCTGAGGGATTTTTACGACTTATCTCTGAAGTAATTTATAGATCTATTGTTACTGCTATTATTCAATAAATGGATGCATTTCTTTGCTCTCTCTTGAACGTCAAA
>XM_036981371.1
CCTAAGCAGGTAGCTAGGCCCCATTGACTTGTATAGGCCCATAGATGGCTAGCTATCAACAACCTATCCTGTCATCCGCTCAATTAAAACGACTACTGGGAGCAAGTTGTTTTAATAGGCGAGTATATGCCATTTATTGGCCTACGCATGTAAGAAGGATGCCTCAGTCACACAAATCACCAGCGGTGGGATTGAAACCGTTGAGGAATTCAACCCATTCTCAGCCAGTGCTATGgGCACCCACACTGGGACCACCATCCCTATCTCTGCTGCCTCCTCCCAACCAGCTGTCCTACAGGCTTCTGCTGTGGAGCCCACCCCACAAGCTACTGCGGCTGCTGCCCAGGCTAACCTGCTCAGGCAACAGGAGGAGCTGGAGAAGAAAGCTGCTGAACTGGATCGGAAAGAGCAGGAGCTCCAGAACAGGCCTGGAGGCCACATTACAAAAGAAAACAACTGGCCGCCACTTCCCAAGTTTTCCCCCATAAAGCCTTGTTTCTACCAGGACTTCAATGAAGACATCCCTGAAGAGTACCAGAAGATATGCAAGAGGATGTACTACCTTTGGATGTTTCACAGTATCACACTCTTCCTGAACCTTCTGGCCTGCCTGGCCTACTTCACGGCCGATCCAAACGCGGGGGTGGACTTTGGTCTGTCCATCCTCTGGTTCGTCCTCTTCACCCCCGTCTCTTTCGTCTGTTGGTACAGGCCAGTGTACAAAGCCTTCAGGTCGGACAGTTCCTtcagcttcttcttcttcttctttgttttcTTCTTCCAAGTGTCTGTCTACATCATCCAGTGTGTGGGGATCCCCAAGTGGGGGAACAGTGGATGGATTTCGTCCATCACCATGATAAGAAGCAACATGGCTGTAGCTGTGGTCATGATGGTTGTGGCCGGCTGCTTCACTGTGAACGCTGTCCTCGCCATCATCCTACTCAAAATGGTCCACTCCAACTATCGTCGGACGGGGGCCAACTTCACCAAGGCCCAGCAGGAGTTCTCTTCGGGGGTCCTCACCAACCAGACCTTTCAGAGCGCCGCGGCCAGCGCCGCCTCCTCAGCCGCCCAGGGGGCCTTCCAAGGACGCTAGTGATCCTAAAGTCACAGGGCCAGGTTCCTCCTAACCTTTCTAGGCACCTCTCACTCACTCCAAGCCCCGTTTTGTCCCATGGCCTCAGTGTCTCTGCAGAGGCAACAGAAATGGCTGACAGGACAGAAACTAGACTGGTATACAGGAACATTACAATTTACTGCT

Function

NR:

description
secretory carrier-associated membrane protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981370.1 False 4888 mRNA 0.43 9 86971824 86981256
XM_036981371.1 True 1264 mRNA 0.53 9 86974719 86980125

Neighbor

gene id symbol gene type direction distance location
LOC110506961 NA coding downstream 6199 86947442 ~ 86965625 (-)
LOC110506962 LOC106562712 coding downstream 6497 86963073 ~ 86965327 (-)
LOC110506206 neo1 coding downstream 142068 86614790 ~ 86829756 (-)
LOC110506964 LOC106562409 coding downstream 359583 86602667 ~ 86612241 (-)
LOC110506207 LOC106562785 coding downstream 369426 86556823 ~ 86602398 (-)
LOC110506954 LOC106562777 coding upstream 3308 86984564 ~ 87196696 (-)
LOC110514547 LOC106562775 coding upstream 243427 87224653 ~ 87258522 (-)
LOC110506202 LOC106562774 coding upstream 282341 87262460 ~ 87359594 (-)
LOC110512518 trip4 coding upstream 385096 87366352 ~ 87453975 (-)
LOC110506946 LOC106562772 coding upstream 475191 87456447 ~ 87498104 (-)
G555999 NA non-coding downstream 25723 86945443 ~ 86946101 (-)
G555998 NA non-coding downstream 30508 86940975 ~ 86941316 (-)
G555829 NA non-coding downstream 31540 86939956 ~ 86940284 (-)
G555808 NA non-coding downstream 85595 86886028 ~ 86886229 (-)
G556015 NA non-coding upstream 11557 86992813 ~ 86993250 (-)
G556021 NA non-coding upstream 30026 87011282 ~ 87012444 (-)
G556024 NA non-coding upstream 39958 87021214 ~ 87021555 (-)
G556026 NA non-coding upstream 41730 87022986 ~ 87023273 (-)
G556065 NA non-coding upstream 137765 87119021 ~ 87119628 (-)
G555617 NA other downstream 513859 86455124 ~ 86457965 (-)
LOC110526741 NA other downstream 524270 86439615 ~ 86447991 (-)
G555606 NA other downstream 533922 86434941 ~ 86437902 (-)
G555590 LOC106587652 other downstream 578764 86392747 ~ 86393060 (-)
LOC110506939 LOC106596505 other downstream 1215475 85741675 ~ 85779604 (-)
LOC110513865 LOC106562791 other upstream 565333 87546236 ~ 87693072 (-)
LOC110526751 LOC106562707 other upstream 791991 87773201 ~ 87860425 (-)
G557663 NA other upstream 2177968 89159224 ~ 89159885 (-)
G558051 NA other upstream 2640092 89621348 ~ 89621755 (-)

Expression


Co-expression Network