Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118964960 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 87759569 ~ 87764850 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005052274.1 | False | 3394 | mRNA | 0.42 | 2 | 87759569 | 87764849 |
| XR_005052275.1 | False | 3085 | mRNA | 0.43 | 3 | 87759569 | 87764849 |
| TU630728 | False | 341 | lncRNA | 0.44 | 1 | 87762226 | 87762566 |
| TU630726 | False | 627 | lncRNA | 0.44 | 1 | 87763664 | 87764290 |
| TU630729 | True | 376 | lncRNA | 0.39 | 2 | 87764432 | 87764850 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| st3gal-i | st3gal-i | coding | upstream | 4 | 87749056 ~ 87759565 (+) |
| LOC110526759 | LOC106562792 | coding | upstream | 61988 | 87694999 ~ 87697581 (+) |
| LOC118964958 | senp8 | coding | upstream | 560469 | 87196781 ~ 87199100 (+) |
| LOC110526767 | LOC106587658 | coding | upstream | 1215065 | 86534461 ~ 86544504 (+) |
| LOC110526773 | LOC105014000 | coding | upstream | 1232647 | 86513613 ~ 86526922 (+) |
| LOC110526745 | LOC106562700 | coding | downstream | 132632 | 87897481 ~ 87996337 (+) |
| LOC118964961 | NA | coding | downstream | 216482 | 87981331 ~ 87986876 (+) |
| LOC110526997 | glce | coding | downstream | 273248 | 88038097 ~ 88121871 (+) |
| LOC110526779 | LOC106595196 | coding | downstream | 371766 | 88136615 ~ 88148567 (+) |
| LOC110526780 | LOC106562699 | coding | downstream | 384205 | 88149054 ~ 88168508 (+) |
| G556552 | NA | non-coding | upstream | 36370 | 87722745 ~ 87723199 (+) |
| G556536 | NA | non-coding | upstream | 55493 | 87702281 ~ 87704076 (+) |
| G556528 | NA | non-coding | upstream | 65925 | 87693374 ~ 87693644 (+) |
| G556329 | LOC106562772 | non-coding | upstream | 301667 | 87456510 ~ 87457902 (+) |
| G556276 | NA | non-coding | upstream | 339904 | 87419454 ~ 87419665 (+) |
| G556573 | NA | non-coding | downstream | 6424 | 87771273 ~ 87773332 (+) |
| G556586 | NA | non-coding | downstream | 29630 | 87794479 ~ 87794790 (+) |
| G556629 | NA | non-coding | downstream | 113000 | 87877849 ~ 87878485 (+) |
| G556632 | NA | non-coding | downstream | 118464 | 87883313 ~ 87883525 (+) |
| G556634 | NA | non-coding | downstream | 119820 | 87884669 ~ 87886177 (+) |
| G556150 | LOC106562774 | other | upstream | 462583 | 87296518 ~ 87296986 (+) |
| G555456 | NA | other | upstream | 1189335 | 86569073 ~ 86570234 (+) |
| G555405 | LOC106587654 | other | upstream | 1308957 | 86449844 ~ 86450612 (+) |
| LOC118964955 | LOC106592958 | other | upstream | 1407685 | 86350925 ~ 86353193 (+) |
| G557241 | NA | other | downstream | 815480 | 88580329 ~ 88584055 (+) |
| G557324 | NA | other | downstream | 981454 | 88746303 ~ 88747223 (+) |
| G557562 | NA | other | downstream | 1269961 | 89034810 ~ 89035260 (+) |
| G556564 | NA | non-coding | upstream | 68 | 87761461 ~ 87762158 (+) |
