LOC110526783 (LOC106562667)


Basic Information

Item Value
gene id LOC110526783
gene name LOC106562667
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 88817071 ~ 88819232 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607972.2
TGATGCAAATAGGGAATATAGGCTATAGCCTAATGTCAATCAAACATTGTCACCAATCATTGTGCGTTCAGGGCAGGGCATCAAGAAGCGGTCACAATATAAATCCTGTAAGAACTGCAATTGTCAAGACGCTTTGAGCTACCCCACCAAGACCGCTACATTGTCAATGTGTGTGATTATGCGATGATGGGAATGGCGCATAGCAATCGCTGCGCTCTTATCATTTCAAACTAACCTGAGGATGTATTGGAAGCAGAGTGAGCGACTCCAACCCTGATTTGAAGTTGGATAGCCTACATGAATCACTCGAATTTAATAACAGAAACGATGACTGAAGGAAACAACAGCAGTGTAGGACTACTGAATCGGTCCTTGACGGATCTGGACCGGTTCAGTAGCCTAGAGGACATCGACGTGACGGCCGACGGGACTCCGATTTTGAGGGTGTTCATCTGCGTCGTTTACTCCGTGGTGTGCGCTGTGGGCTTGGTGGGCAACTTACTTGTGCTGTTCTTTATCAGAGTGAAACAAGAGCGGAAAAAATCCAGAATCAACTTCTTTGTACTTAACTTGGCAGTGACGGACTTCCAGTTTGTATTGACTCTGCCGTTCTGGGCAGTGGACACCGCACTTGACTTCAGCTGGCCGTTTGGAGACGCCATGTGCAAAATCATCAGCTCCGTCACGGTTATGAACATGTACGCGAGCGTGTTCTTTCTGACTGCAATGAGCGTCACCCGATACTGGTCCGTCGCCTCCTCTCTAAAGGACCGAACTAGGCAAAAGTCCTGCTCTGCCAAATGGATTAGCGTGGTTCTTTGGGTATCCGCAACAATTGCGACTGCACCAACATCCATATTCTCAACCGTGACAAATGTAGCGGGGGAAAAACTATGTTTGCTTAAGTTCCCTGATGGACAATATTGGTTAGCAGTTTATCACCTTCAGAAAATTATATTTGCATTTGTTTTACCAATGGCCATTGTTTCAGTCAGCTACATCATGCTTTTGCGATTCATCCGCAACCGTAGTATGAAAACAAACACCAAACGGACATCACAAGTCACCAAATCTGTCACCATCGTcgtcctctccttctttctttgcTGGATGCCAAATCACGCCATCACATTCTGGGGCGTCCTTGTGAAATTGAATGCTGTGCATTGGGATAAATCTTACTACATAGTTCACACTTACGTATTCCCTGTGACAGTCTGCCTTGCGCACGCCAATAGCTGTCTAAACCCTGTAATTTATTGCCTAATGAGAGAAGAGTTTAGAAAGAAACTGAAAGATTTGTTATATGGCGGATAGTCACTTTACGCAGTGGAAGAATCGGTTTCCGTTGCCATTACGCACGCGCTCCCTGTTGCATAATGTACCCTATAGGGCGCACGACATGGGTGTACTGTAATAGGCGAATGCAGTATGTTCTGTTGGTGGAAAAAAATCACAAAACAGGCATGGACAAGCACTAAAACAAACGGTCACAATGATACAGTGATAATGGCTACCAAAATTGCGCATGAGGCAATTCTGCCTGTTATGGTTCCTCCTATCCATGTGCTGTTGTATTCCCGGAAAGTTATCATTAAACGATAGAGAAACGGCCCGTACTGTCATCATTAAACGCTAGGGAAACCGCCCGGACAGTCATCATTAAACGATAGAGAAACCGCCCGGACAGTCATCATTAAACGATAGAGAAACCGCCCGGACAGTCATCATTAAACGCTAGGGAAACCGCCCGTACTGTCATCATTAAACGCTAGGGAAACCGCCCGGACAGTCATCATTAAACGATAGAGAAACCGCCCGGACTGTCGTCTTTAAACGATAGAGAAACCGCCCGTACAGTCATCATTATTAAACGATAGAGAAACCGCCCGGACAGTCATCATTAAACGATAGAGAAACAGAGGCAGACTAGATATTGTCTTTATCATTCCATCATAATTGTAGCCTAGTGGAGATAAACGTACCCATGATCCTATGTTCTCCTTCACAGCTGCACGTCTAGTCTTCAATGTGTGCAATGGCATTTGTCACAAATTCACAAATTACATGCAATGGGAGGGAAGTGTAAATATTATGCCTATGATAACAGATAACCATATTGCTTAAATTGTGTTCATGCAAAATAAACATCCATATATTTA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607972.2 True 2162 mRNA 0.45 1 88817071 88819232

Neighbor

gene id symbol gene type direction distance location
LOC110527001 mo4l1 coding downstream 1325 88801678 ~ 88815746 (-)
uacab LOC106587861 coding downstream 33050 88698513 ~ 88784021 (-)
LOC110517398 tle3 coding downstream 285796 88485457 ~ 88531275 (-)
LOC110513137 LOC106562701 coding downstream 820183 87991498 ~ 87996888 (-)
LOC110526751 LOC106562707 coding downstream 956646 87773201 ~ 87860425 (-)
LOC118936482 LOC105013624 coding upstream 9465 88828697 ~ 88951131 (-)
LOC110506978 LOC106587757 coding upstream 137358 88956590 ~ 88964509 (-)
LOC110526789 map2k5 coding upstream 155339 88974571 ~ 89111595 (-)
LOC110526791 LOC104927744 coding upstream 408309 89227541 ~ 89267492 (-)
LOC110509922 LOC106563534 coding upstream 497893 89317125 ~ 89346431 (-)
G557468 NA non-coding downstream 7011 88809186 ~ 88810060 (-)
G557464 NA non-coding downstream 20840 88795699 ~ 88796231 (-)
G557445 NA non-coding downstream 61193 88755453 ~ 88755878 (-)
G557428 NA non-coding downstream 77009 88739255 ~ 88740062 (-)
G557423 NA non-coding downstream 115531 88701276 ~ 88701540 (-)
G557439 NA non-coding upstream 6508 88825740 ~ 88827478 (-)
G557488 NA non-coding upstream 52105 88871337 ~ 88871606 (-)
G557495 NA non-coding upstream 60659 88879891 ~ 88881197 (-)
G557518 NA non-coding upstream 105680 88924912 ~ 88937121 (-)
G557523 NA non-coding upstream 124109 88943341 ~ 88943599 (-)
LOC110513865 LOC106562791 other downstream 1265681 87546236 ~ 87693072 (-)
LOC110506946 LOC106562772 other downstream 1318979 87456447 ~ 87498104 (-)
G555617 NA other downstream 2359106 86455124 ~ 86457965 (-)
LOC110526741 NA other downstream 2369517 86439615 ~ 86447991 (-)
G557663 NA other upstream 339992 89159224 ~ 89159885 (-)
G558051 NA other upstream 802116 89621348 ~ 89621755 (-)
G558124 NA other upstream 901243 89720475 ~ 89722021 (-)
G558246 LOC106562569 other upstream 1046736 89865968 ~ 89868057 (-)
G558339 LOC106587697 other upstream 1154950 89974182 ~ 89981624 (-)

Expression


Co-expression Network