LOC118936482 (LOC105013624)


Basic Information

Item Value
gene id LOC118936482
gene name LOC105013624
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 88828697 ~ 88951131 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981422.1
AAAACGTCATCACGCTTGCACTAGGAATTGCAAGATGGCGGAGAGTGCGGAATTGAAGCAAATGGTGATGAGCCTGCGCGTTTCAGAGCTGCAGGTTCTGCTAGGTTACGCGGGCCGCAACAAACATGGGCGAAAACATGAGCTGTTAACCATGGCCTTGCATCTCCTGAAAGCCGGCTGCAGCCCCGCCGTGCAGATGAAGATCAAGGAGCTGTACTGCAGACGCTTCCCCACCAAGATGGGCTCTCCCTCAGAGCTGGTCCTGCCCGGACCACACTACCCTGCCTCGGGAGGAGGGGGCACCGCCGCCCTACCTGCCGGCCTCAGCCAGCTGGTGTATGAGGGCCACGGGCACGGGGGAGTACCCTCGCCGGCTGCCCTGCTGCCCATCTCGTTGCTGGGGCCTGGCAAGCATGAGCTCAGCGGGCTGGCGCACCACCTGCCCACCTCGGCCACCCTGCATCCGGTGCACCCAGACGTCAAGCTGCAGAGGCTGCCCTTCTACGATATGCTGGACGAGCTCATCAAACCCACCAGTCTAGcaTCGGACAACAGCCAGCGGTTTCAGGAAACGTGTTTTGCGTTCGCACTAACGCCGCAGCAAGTCCAACAGATTAGCAGCTCAATGGACATCTCGGGGACCAAATGTGACTTCACAGTACAAGTTCAATTACGGTTTTGTCTCTCTGAGACGAGTTGTCCTCAGGAAGACCACTTTCCGCCCAATCtgtgtgtgaaggtgaacgggaAGCCATGCAACCTCCCGgGTTATCTTCCTCCAACGAAAAACGGTGTGGAGCCGAAGCGCCCCAGCCGGCCCATCAACATTACCTCAGTGGTCAGACTATCCACCACAGTCCCCAACACCATCGTGGTGTCTTGGACCTCAGAGGTTGGAAGGCACCTTCTGTGTTTTCAGAGCTACTCTATGGCGGTGTACCTGGTCAAGCAGCAGTCGTCCACAGTACTGTTGCAGAGACTACGGTCCAAAGGCATCAGGAACCCAGACCATTCCAGAGCACTCATCAAAGAGAAGCTAACCGCAGATCCAGACAGTGAAATCGCCACCACCAGCCTGCGTGTGTCGCTGCTCTgtccgctgggGAAGATGCGTCTGATGATCCCGTGCCGGGCACTGAGCTGTTCCCACCTGCAGTGTTTTGACGCTACGCTGTACATCCAGATGAATGAGAAGAAACCCACCTGGGTTTGTCCCGTCTGTGATAAGAAAGCCCCCTACGAACATCTCATCATTGACGGGTTGTTTATGGAGATCCTGAACAGCTGTGTAGACTGTGATGAGATCCAGTTTAAGGAGGATGGCTACTGGGCCCCCATGAGGACAAAGAAGGAAGTACAGGAGGTCTCGTCAGCCTCCTACAGCAACGGACTGGAAGgcTTGCACCGGTCGGCGGTAGGGGAACAGAGGAGCTCGTCGTCCCACAACGGGGGCAGTAGTAGGATGAAGGTGGAGGTGATCGACCTGACCCTGGACAGCTCCTCAGAGGACGACGATGATGACCAACCGCCCCTCAAGAGGCCctgcccctctctgtcccccacctcccctcccatcGTCAACAAGGGaGTGTTGAACCTGCACCACCAGGTGTCCCCAGTGAGCCGGACCCCCAGCATGCCGTCTGTGGACACCAGCTACATCCCCCCTGTACCTCCCCTCATCCAGGACTACCGTCCCTactaccacgccccaacccagctcacagATGTGAATTTCTTCTCCTTTCTACAAGGGGACAACCATCAGCATTACAACATGGTGATGGCCGCCGCCGCCGCCGCCTCGGCCTCAGACGACCACGAGCTCCTCCTCAACCACTTCCGTCCCTACACCACCTCTTCCTCGTCCCAGCTGTTCCTGGACCAATCTGGGGCGCCCTCCTCTGGCTCGCTGGCGCCCGTCAACGGTGGTGATGGTGGAGGAAACAGCAGCGGTGGCAGCAGCAGTAGCCTAGTGTCCTCTAGCAGTCTGAGAGACACTCACagcacacactccacacactctcacacacaccccacgcactcacacacacaccccacgcactcacacacacaccccggcGTAGGAGGTCGGTCCAGTGCTGATGTGACGGCGGCCGCATCCCTCTACGGGGCCGTCCCCGACGTGATCTCACTAGACTGACGATTTTGTTTTCGGCGACTAGCGACTGACTCCGAAACAGAGGGTTTGTTGGTTGTTTAATGGAGGATGCAGTCATGACTACTAAACTGACGCAGAAACAGTTTAACGGTCCCACCCAGTCTACAGCTCTGGTTTTGAGTTGTGTCGTTAAGGCTGACTCCAGAACAGTGGAATACCTGTCTGTGGCGGAGCCGGTCCCGAGGTGTCGTTTGACTGGGCTGACCCAGGAACAGTTATAAAGTCACACCCCACAGATGGTTGGGATTGGCACCTAGTGTTGCTAGTTACCGGTTGGTAGCTGGCTCCCTGACGACATTCCACTAGACTGATATCAGAGAGGTCTATGGGTTTCATCTCTGACGTCGACAGACTGGACCTAGATCAGCTCCCTGCCGGTACCTACCAGAAACGCTAGCCGTGCAAAAACGGAGGAaggctcttttttttttttttt
>XM_036981423.1
AAAACGTCATCACGCTTGCACTAGGAATTGCAAGATGGCGGAGAGTGCGGAATTGAAGCAAATGGTGATGAGCCTGCGCGTTTCAGAGCTGCAGGTTCTGCTAGGTTACGCGGGCCGCAACAAACATGGGCGAAAACATGAGCTGTTAACCATGGCCTTGCATCTCCTGAAAGCCGGCTGCAGCCCCGCCGTGCAGATGAAGATCAAGGAGCTGTACTGCAGACGCTTCCCCACCAAGATGGGCTCTCCCTCAGAGCTGGTCCTGCCCGGACCACACTACCCTGCCTCGGGAGGAGGGGGCACCGCCGCCCTACCTGCCGGCCTCAGCCAGCTGGTGTATGAGGGCCACGGGCACGGGGGAGTACCCTCGCCGGCTGCCCTGCTGCCCATCTCGTTGCTGGGGCCTGGCAAGCATGAGCTCAGCGGGCTGGCGCACCACCTGCCCACCTCGGCCACCCTGCATCCGGTGCACCCAGACGTCAAGCTGCAGAGGCTGCCCTTCTACGATATGCTGGACGAGCTCATCAAACCCACCAGTCTAGcaTCGGACAACAGCCAGCGGTTTCAGGAAACGTGTTTTGCGTTCGCACTAACGCCGCAGCAAGTCCAACAGATTAGCAGCTCAATGGACATCTCGGGGACCAAATGTGACTTCACAGTACAAGTTCAATTACGGTTTTGTCTCTCTGAGACGAGTTGTCCTCAGGAAGACCACTTTCCGCCCAATCtgtgtgtgaaggtgaacgggaAGCCATGCAACCTCCCGgGTTATCTTCCTCCAACGAAAAACGGTGTGGAGCCGAAGCGCCCCAGCCGGCCCATCAACATTACCTCAGTGGTCAGACTATCCACCACAGTCCCCAACACCATCGTGGTGTCTTGGACCTCAGAGGTTGGAAGGAGCTACTCTATGGCGGTGTACCTGGTCAAGCAGCAGTCGTCCACAGTACTGTTGCAGAGACTACGGTCCAAAGGCATCAGGAACCCAGACCATTCCAGAGCACTCATCAAAGAGAAGCTAACCGCAGATCCAGACAGTGAAATCGCCACCACCAGCCTGCGTGTGTCGCTGCTCTgtccgctgggGAAGATGCGTCTGATGATCCCGTGCCGGGCACTGAGCTGTTCCCACCTGCAGTGTTTTGACGCTACGCTGTACATCCAGATGAATGAGAAGAAACCCACCTGGGTTTGTCCCGTCTGTGATAAGAAAGCCCCCTACGAACATCTCATCATTGACGGGTTGTTTATGGAGATCCTGAACAGCTGTGTAGACTGTGATGAGATCCAGTTTAAGGAGGATGGCTACTGGGCCCCCATGAGGACAAAGAAGGAAGTACAGGAGGTCTCGTCAGCCTCCTACAGCAACGGACTGGAAGgcTTGCACCGGTCGGCGGTAGGGGAACAGAGGAGCTCGTCGTCCCACAACGGGGGCAGTAGTAGGATGAAGGTGGAGGTGATCGACCTGACCCTGGACAGCTCCTCAGAGGACGACGATGATGACCAACCGCCCCTCAAGAGGCCctgcccctctctgtcccccacctcccctcccatcGTCAACAAGGGaGTGTTGAACCTGCACCACCAGGTGTCCCCAGTGAGCCGGACCCCCAGCATGCCGTCTGTGGACACCAGCTACATCCCCCCTGTACCTCCCCTCATCCAGGACTACCGTCCCTactaccacgccccaacccagctcacagATGTGAATTTCTTCTCCTTTCTACAAGGGGACAACCATCAGCATTACAACATGGTGATGGCCGCCGCCGCCGCCGCCTCGGCCTCAGACGACCACGAGCTCCTCCTCAACCACTTCCGTCCCTACACCACCTCTTCCTCGTCCCAGCTGTTCCTGGACCAATCTGGGGCGCCCTCCTCTGGCTCGCTGGCGCCCGTCAACGGTGGTGATGGTGGAGGAAACAGCAGCGGTGGCAGCAGCAGTAGCCTAGTGTCCTCTAGCAGTCTGAGAGACACTCACagcacacactccacacactctcacacacaccccacgcactcacacacacaccccacgcactcacacacacaccccggcGTAGGAGGTCGGTCCAGTGCTGATGTGACGGCGGCCGCATCCCTCTACGGGGCCGTCCCCGACGTGATCTCACTAGACTGACGATTTTGTTTTCGGCGACTAGCGACTGACTCCGAAACAGAGGGTTTGTTGGTTGTTTAATGGAGGATGCAGTCATGACTACTAAACTGACGCAGAAACAGTTTAACGGTCCCACCCAGTCTACAGCTCTGGTTTTGAGTTGTGTCGTTAAGGCTGACTCCAGAACAGTGGAATACCTGTCTGTGGCGGAGCCGGTCCCGAGGTGTCGTTTGACTGGGCTGACCCAGGAACAGTTATAAAGTCACACCCCACAGATGGTTGGGATTGGCACCTAGTGTTGCTAGTTACCGGTTGGTAGCTGGCTCCCTGACGACATTCCACTAGACTGATATCAGAGAGGTCTATGGGTTTCATCTCTGACGTCGACAGACTGGACCTAGATCAGCTCCCTGCCGGTACCTACCAGAAACGCTAGCCGTGCAAAAACGGAGGAaggctcttttttttttttttt

Function

NR:

description
E3 SUMO-protein ligase PIAS1-like

GO: NA

KEGG:

id description
K04706 PIAS1; E3 SUMO-protein ligase PIAS1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981422.1 False 2618 mRNA 0.57 14 88828697 88951131
XM_036981423.1 True 2600 mRNA 0.57 14 88828697 88951131

Neighbor

gene id symbol gene type direction distance location
LOC110526783 LOC106562667 coding downstream 9465 88817071 ~ 88819232 (-)
LOC110527001 mo4l1 coding downstream 12951 88801678 ~ 88815746 (-)
uacab LOC106587861 coding downstream 44676 88698513 ~ 88784021 (-)
LOC110517398 tle3 coding downstream 297422 88485457 ~ 88531275 (-)
LOC110513137 LOC106562701 coding downstream 831809 87991498 ~ 87996888 (-)
LOC110506978 LOC106587757 coding upstream 5459 88956590 ~ 88964509 (-)
LOC110526789 map2k5 coding upstream 23440 88974571 ~ 89111595 (-)
LOC110526791 LOC104927744 coding upstream 276410 89227541 ~ 89267492 (-)
LOC110509922 LOC106563534 coding upstream 365994 89317125 ~ 89346431 (-)
trnag-ucc NA coding upstream 443772 89394903 ~ 89394974 (-)
G557439 NA non-coding downstream 1219 88825740 ~ 88827478 (-)
G557468 NA non-coding downstream 18637 88809186 ~ 88810060 (-)
G557464 NA non-coding downstream 32466 88795699 ~ 88796231 (-)
G557445 NA non-coding downstream 72819 88755453 ~ 88755878 (-)
G557428 NA non-coding downstream 88635 88739255 ~ 88740062 (-)
G557543 NA non-coding upstream 4230 88955361 ~ 88956545 (-)
G557591 NA non-coding upstream 19353 88970484 ~ 88971015 (-)
G557592 NA non-coding upstream 21744 88972875 ~ 88973694 (-)
G557598 NA non-coding upstream 33979 88985110 ~ 88985353 (-)
G557600 NA non-coding upstream 48192 88999323 ~ 88999534 (-)
LOC110526751 LOC106562707 other downstream 1043345 87773201 ~ 87860425 (-)
LOC110513865 LOC106562791 other downstream 1277307 87546236 ~ 87693072 (-)
LOC110506946 LOC106562772 other downstream 1330605 87456447 ~ 87498104 (-)
G555617 NA other downstream 2370732 86455124 ~ 86457965 (-)
LOC110526741 NA other downstream 2381143 86439615 ~ 86447991 (-)
G557663 NA other upstream 208093 89159224 ~ 89159885 (-)
G558051 NA other upstream 670217 89621348 ~ 89621755 (-)
G558124 NA other upstream 769344 89720475 ~ 89722021 (-)
G558246 LOC106562569 other upstream 914837 89865968 ~ 89868057 (-)
G558339 LOC106587697 other upstream 1023051 89974182 ~ 89981624 (-)

Expression


Co-expression Network