LOC110509922 (LOC106563534)


Basic Information

Item Value
gene id LOC110509922
gene name LOC106563534
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 89317125 ~ 89346431 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591141.2
GTCTAGACTGGCACATGATGGGAATCAACCAATGGCTCCAGAGCTTTCCTGGGGCCCCCGTGTGTGTACGGGCGAGTGTATCCGAAAAGAATAGCAGAGAGTGAGACTGGCAGCAAAGTAATTCAAGTTTTCCTTTAAACCACTCCTGAGTCTTGAATCGGAGTAGCTACATCTGCATCCGTATGTTTGAGCAGCATAAAAACTCAATGTAAACTTTTTATTTCGGGGTTGCAAACGGATTATTCTACACTACGGTGGAAAGTAACATTGGAATCTGAATGCGGCAAGGATTATTTGGGATTATTTCGTGGTGAAGCAACTCCATCGATGTGCCGTCAGAAAGATTCTCAAGCGAAGGATTTAACCAAGGCTGCTCAAAGTCCAAGACAAAAACCGAACTATTTTGCTGTCGTTTCATGTGGTAGCTATAGTGTAGTTATTGGAGGAATAATTATGGTATAGCCTATGAATTGCTGCTCGGAACATAGTTTTGGGGAATTGTGTTGCCTCTGTAAAGACAAACGTTTTCATTGAGTTGGTAGACTATATGGTTGTAGGATATAACAGACCAGTAAATGCATGTATGTCGCATTCTGTTTTGTTGTGTAATCTCGTTACATTTGACTTTGTTTAATGCAACATACAACCGTAAATTACATTCTAATGCTGCGAGTTAGTCATAAATCTACGACCCCCGGTTGCGCATGTAGTGCGCGCCGTTTACAAAACATTCATGTTGTGCGGAGACCATAAATCAATGTGGAATCCTCACAGACCTGGACGGGAACAATACGACACATCCAAAACTGTTTAAATTGTCGTATGTTCAGGTCGAAACGCTCAGGTCTTATACGGCGACTCTGGAGAAGCCGTTTAGTCccagacagagacgggggagatgggagaagcaAACGAAGCGAGGAGTTTCGGGACGGTTCGTGTGGCAGTAACCCAGAAAAAAATCCCAAAACGGAGCTCGGGTCGGTGACCCGTGCCTCGCCATCTTTGGGAACTTTCGACGAAGTGTGCAACACAGACCTCACGGACAGCGCAGAGTCGGCGCCGGGGGACAATTCGGACCATGGTCAGGGGGATGCCATGTGTGTCCCCGTCCCTCATCACCGAGGCTCTCAGCCAGAACACGAGAATGACAGTAGAACGGTTACTTGCTGTTTGTTTCGAGACAGGGATCCTAGACCTCGGAGCCCCGTCTTGACCCGGGGTATTCGAAACTCTAGTCCCCGCGATGGAGGTATCCTCACGGGACGGGAGGGGAATATTGGCTCGGTGGCGGAGCAAGAACTCAAGAACGTTACCTATGCTCTTTTGAAAATACTCAAGGAGAAACCGCTGGATGCCTTGTTGGAGGCGGTGGAGTCGAAAGGAGGGATGCCCAGTGACTGTGTTCTGGTACCCCAGACGGAGCTGCGTTTAGGTGGCCACTCGACATCTCCCCCATTTCTGCTCTGTAAACTCTACCGATGGACTGACCTACACCACTCGACTCAACTCAAAGCGCTGTGCCACTGTCAAAGCTTCCGGGCATTGGACAGCAGCGAAACGGTGTGCTGTAACCCCTATCACTACAGTCTCTTGTGTGGGCCAGAATCACCACCACCCCCCTACTCACGACTATCTCCCGCAGATGAACACAAGCCACTGGAACTATCAGATTCAACACTTTCAACACTGTCGTACACTGAAACTGTGGCCCCCCACTCCCCCGACGTCGCGCCAAGACTCTTCTCAGccCCCGGTACCTCCGTGGGCTCCTCGTCCTCCTGTGGGCGGCGTTCCCACTGGTGCAGTGTAGCCTACTGGGAACAGCAGACGCGGGTCGGCCGCCTCTACCCGGCCCACGAGCCCTCGCTCAGCATCTTCTACGACCTACCTCAGGGCACGGGCCTCTGCCTGGGCCAACTCAACGCCGTTGCCAACGCTAGCAACGGTCACCGCTGCGACGGTCACCATGGCAACCGTAGTCACCGAGGTGGTAGTGGCAGCAGCACGGGCAGCTGTGTCCAGCGAACGCGCAGCAAAATCGGCTACGGGATTGTCCTGAGCCAAGAACCTGACGGAGTGTGGATCTACAACCGTAGCCAGCACCCAGTGTTTGTCCACTCGCCCACCCTGGACCTGCCCAGCTCAGTGAGGGGACTGACGGTGAGGAGGGTGATGCCTGGCTACTCACTCAAAGTGTTTGACTATGACAAGTCCACTTGGATCCTGCAGCAGGGCATGGAGCCCCCTGTGGGGCTGGAGGGCCCCTATGACCCCCACAGTGTGAGGATCAGCTTCGCCAAGGGCTGGGGCCCCTGCTACTCCAGACAGTTCGTCACCTCCTGCCCCTGCTGGGTGGAGGTGTTGCTCAATACCCACAGATAGCACACAGACtaggaagacagacagagggatggatggacaggCATACACACGGATGGTTAGACGGGGGAACACAAATACAGTACACGTATTTACTTACACAGGTGCTCACAGGtatatgtgtacacacacacacacacacacatacacacacgcatgcacgcacgcacgcacacacacacacacacacacacacacacacatagacacacacacacacac

Function

NR:

description
mothers against decapentaplegic homolog 6-like

GO: NA

KEGG:

id description
K04677 SMAD6; mothers against decapentaplegic homolog 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591141.2 True 2604 mRNA 0.52 4 89317125 89346431

Neighbor

gene id symbol gene type direction distance location
LOC110526791 LOC104927744 coding downstream 49633 89227541 ~ 89267492 (-)
LOC110526789 map2k5 coding downstream 205530 88974571 ~ 89111595 (-)
LOC110506978 LOC106587757 coding downstream 352616 88956590 ~ 88964509 (-)
LOC118936482 LOC105013624 coding downstream 365994 88828697 ~ 88951131 (-)
LOC110526783 LOC106562667 coding downstream 497893 88817071 ~ 88819232 (-)
trnag-ucc NA coding upstream 48472 89394903 ~ 89394974 (-)
LOC118964962 chst1 coding upstream 209948 89556379 ~ 89561289 (-)
LOC110526793 LOC106587778 coding upstream 611484 89956035 ~ 89965389 (-)
LOC110506981 dh12b coding upstream 910813 90257244 ~ 90267943 (-)
LOC118965054 NA coding upstream 954955 90301386 ~ 90303985 (-)
G557809 NA non-coding downstream 1235 89315387 ~ 89315890 (-)
G557805 NA non-coding downstream 6390 89310122 ~ 89310735 (-)
G557783 NA non-coding downstream 60722 89255839 ~ 89256403 (-)
G557782 NA non-coding downstream 63225 89253318 ~ 89253900 (-)
G557763 NA non-coding downstream 95766 89221052 ~ 89221359 (-)
G557823 NA non-coding upstream 6526 89352957 ~ 89353290 (-)
G557824 NA non-coding upstream 7861 89354292 ~ 89354494 (-)
G557835 NA non-coding upstream 20473 89366904 ~ 89368490 (-)
G557844 NA non-coding upstream 26516 89372947 ~ 89374181 (-)
G557848 NA non-coding upstream 31147 89377578 ~ 89377866 (-)
G557663 NA other downstream 157240 89159224 ~ 89159885 (-)
LOC110526751 LOC106562707 other downstream 1531773 87773201 ~ 87860425 (-)
LOC110513865 LOC106562791 other downstream 1765735 87546236 ~ 87693072 (-)
LOC110506946 LOC106562772 other downstream 1819033 87456447 ~ 87498104 (-)
G555617 NA other downstream 2859160 86455124 ~ 86457965 (-)
G558051 NA other upstream 274917 89621348 ~ 89621755 (-)
G558124 NA other upstream 374044 89720475 ~ 89722021 (-)
G558246 LOC106562569 other upstream 519537 89865968 ~ 89868057 (-)
G558339 LOC106587697 other upstream 627751 89974182 ~ 89981624 (-)
G559123 NA other upstream 1576667 90923098 ~ 90923835 (-)

Expression


Co-expression Network