LOC118964962 (chst1)


Basic Information

Item Value
gene id LOC118964962
gene name chst1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 89556379 ~ 89561289 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981437.1
GTGTAGCCTACCTCACACGCACACAGCCTCCTCGCATCAGTTGAAAGAAACCTGACTGCGCGACGGATGCAGTGCACGAAGCTCCTGGTGTTCCACATCTTTCATTTGAATCAGTTATTTTTTCCATGTAGGGTGTTTCCCGACACTATTCGGTTTTGTAAATGGTTTCTTAAGTGTGAATACTCATGGATCTATTGCGCAAGAATATTCCTCTTATTTCTCCGCTATCCCGATGGCAGAAGCGGGGACAAAGCCGAGGAGCGTACCGGGGAAACTGCTTTAGTGGAAACCAGACGCGTTGTCTGTGATTGGAAAAATCGCACGGCTGCTACTTTTCTTTGCGATTGACGGCAGTCCGTAAACACAGCCGTCAATAAGGTATATGACTTGGCTCTGACCGCCGCCGTCTAAATGAAGTGGCCCAGCCATGCAATGTTCCTGGAAGGCAGTGATCCTGCTGGCCTTGGCCTCCATCGCCATCCAGTACACCGCCATCCGGACTCTCACCTCCAAGCCCTTCCAGCTTTGCCCCGTGCCAAGCCCCCAGAACTGTGGCCTCCTGGGAGGCCCCGAGACAGAGTCCCCCATAGAGGGGCGTGCCGGCTGCGACGACTACCCCTACTTCAGCTTCAACGCCTCCCGTAAGACCCACATCATGGTGCTGGCTACAACGCGCAGCGGCTCCTCCTTCGTGGGCCAGCTGCTCAACCAGCATGCTGACATCTTCTACCTATTCGAGCCCCTCTACCATGTCCAGACCACTCTGATCCCTCGGCTATCTCACAGCCGCAACGCAGCCGACCGCAGGGTGATGCTGGGTGCCAGTCGCGATCTCCTGCGGAGCCTCTACGGCTGTGACCTCTATTTCCTAGAGAGTTACATTAAGCCGGCGCCGGCCAACCACACCACGGACAAGCTGTTCCGCAGAGGGGCCAGCCGGGCGCTATGCTCGCTGCCCGTGTGTGATGCCTTTGGACCCACCGACGCCAATGTAGAGGAGGGTGACTGCGTCAAGAAGTGTGCCCCCCTCAACATGACCCTGGCGGCCGATGCCTGCCGCGAGAAGCGGCATGTGGCGATCAAGGTTGTGCGTGTGCCGGAGATCGGGGACCTGCGGGCGCTGGTGGAGGATCCACGGCTGAACATCAAGGTTATCCAGTTGGTGCGCGACCCTCGCGGGATCCTGTCGTCGCGGATCGAGACTTTCCGGGACACCTACCGTCTGTGGAGGATCTGGAGGGCCACAGGGCGGAGGCCGTACAACCTGGACCTCAGCCAGCTGACGGTGGTTTGTGAGGACTTCCTCGGCTCTGTGTCCACAGGACTCAGCCACCCCCACTGGCTCAAAGGGAAGTATATGCTGGTGCGTTACGAGGATCTGTCCAGGAACCCTCTGCTGAAGACCATGGAGATATATGACTTCCTGGGTCTGCCGATGGACAAGAGCGTGGAGGAGTGGATACAGACCAACACTAGGGGCAGCACCGAGCTGTCGGCTAAACACAAGTACGGTACGGTGAGGGACTCAGCGGCCAACGCCGAGAGCTGGCGCTTGAAACTGTCCTACGACATGGTGGAGTACACGCAGGCCACGTGTCACAAGGTTCTACATCAGCTGGGCTATAAGGCAGTAAAGTCAGCTGAGGAACTGAAAAACATGTCGCTCTCACTCGTGCAGGACAAaacttttgtacctttttcctaACAAAGATACTTTTTTGGGGATATATTTATAAATGTTGCCTTATCATTTTCATGGGTTATGTTTGTGTTTTTGTCTTTGATTTCAAATTTGCACTACAACTTAAGAATTCTTAAAGTCATCTGAGGGTGGGAGTTCACTTGTTGGTTTAGGAACAGCACAAAATGTTTGatttaaagaaaaaataaaaaactagagATAAACACACCAGTTTACAAATGTAAATTCAACTCCCGAGGGTTTCATAATGAAGACCATTGACTTTTACTTTCAGCCGTCTGAACTAAATGCAAAGCATCGTCCTCATAGATTCCCTGTACGCCAGCTGTTGCATCAACACACACAGTGAATGTTGCCATTCCCTCTAAGGGGTGACTGAGTCCGCGTTGCAGGAGGACAACAGACTTTTATAGGACTGGACAACATTGGACTGGACAAGACCAACTGTGCAATAAATAGTGAATGTTGCACTCAACCTTTACCAGGATCGTCTTTCTGTCAAGGGGAACGGGGAATACTGGTGACAGGGTGTAACACAACGCAGGGTAATAGCCCACGATACCTACACACCCCCCCGAGTAAAGGGCTTAAATCCCACAGGAAGTGGTATGAATGTTTCATCACAGCATCAGGCGTTCAGGGTCTCTAAGCATCTGTTCCTAACAAAGTCATGAATACTAACCCAGCATCCATAGCAGGAA
>XM_036981438.1
ATGTGTAGCCTACCTCACACGCACACAGCCTCCTCGCATCAGTTGAAAGAAACCTGACTGCGCGACGGATGCAGTGCACGAAGCTCCTGGTGTTCCACATCTTTCATTTGAATCAGTTATTTTTTCCATGTAGGGTGTTTCCCGACACTATTCGGTTTTGTAAATGGTTTCTTAAGTGTGAATACTCATGGATCTATTGCGCAAGAATATTCCTCTTATTTCTCCGCTATCCCGATGGCAGAAGCGGGGACAAAGCCGAGGAGCGTACCGGGGAAACTGCTTTAGTGGAAACCAGACGCGTTGTCTGTGATTGGAAAAATCGCACGGCTGCTACTTTTCTTTGCGATTGACGGCAGTCCGTAAACACAGCCGTCAATAAGGTAACTAGGCTATCCTGTGGAAACAGACGTGCTCAATGTGTTTCCATTATATTGTGCGATCTAATTGCAGCAGGGTATATGACTTGGCTCTGACCGCCGCCGTCTAAATGAAGTGGCCCAGCCATGCAATGTTCCTGGAAGGCAGTGATCCTGCTGGCCTTGGCCTCCATCGCCATCCAGTACACCGCCATCCGGACTCTCACCTCCAAGCCCTTCCAGCTTTGCCCCGTGCCAAGCCCCCAGAACTGTGGCCTCCTGGGAGGCCCCGAGACAGAGTCCCCCATAGAGGGGCGTGCCGGCTGCGACGACTACCCCTACTTCAGCTTCAACGCCTCCCGTAAGACCCACATCATGGTGCTGGCTACAACGCGCAGCGGCTCCTCCTTCGTGGGCCAGCTGCTCAACCAGCATGCTGACATCTTCTACCTATTCGAGCCCCTCTACCATGTCCAGACCACTCTGATCCCTCGGCTATCTCACAGCCGCAACGCAGCCGACCGCAGGGTGATGCTGGGTGCCAGTCGCGATCTCCTGCGGAGCCTCTACGGCTGTGACCTCTATTTCCTAGAGAGTTACATTAAGCCGGCGCCGGCCAACCACACCACGGACAAGCTGTTCCGCAGAGGGGCCAGCCGGGCGCTATGCTCGCTGCCCGTGTGTGATGCCTTTGGACCCACCGACGCCAATGTAGAGGAGGGTGACTGCGTCAAGAAGTGTGCCCCCCTCAACATGACCCTGGCGGCCGATGCCTGCCGCGAGAAGCGGCATGTGGCGATCAAGGTTGTGCGTGTGCCGGAGATCGGGGACCTGCGGGCGCTGGTGGAGGATCCACGGCTGAACATCAAGGTTATCCAGTTGGTGCGCGACCCTCGCGGGATCCTGTCGTCGCGGATCGAGACTTTCCGGGACACCTACCGTCTGTGGAGGATCTGGAGGGCCACAGGGCGGAGGCCGTACAACCTGGACCTCAGCCAGCTGACGGTGGTTTGTGAGGACTTCCTCGGCTCTGTGTCCACAGGACTCAGCCACCCCCACTGGCTCAAAGGGAAGTATATGCTGGTGCGTTACGAGGATCTGTCCAGGAACCCTCTGCTGAAGACCATGGAGATATATGACTTCCTGGGTCTGCCGATGGACAAGAGCGTGGAGGAGTGGATACAGACCAACACTAGGGGCAGCACCGAGCTGTCGGCTAAACACAAGTACGGTACGGTGAGGGACTCAGCGGCCAACGCCGAGAGCTGGCGCTTGAAACTGTCCTACGACATGGTGGAGTACACGCAGGCCACGTGTCACAAGGTTCTACATCAGCTGGGCTATAAGGCAGTAAAGTCAGCTGAGGAACTGAAAAACATGTCGCTCTCACTCGTGCAGGACAAaacttttgtacctttttcctaACAAAGATACTTTTTTGGGGATATATTTATAAATGTTGCCTTATCATTTTCATGGGTTATGTTTGTGTTTTTGTCTTTGATTTCAAATTTGCACTACAACTTAAGAATTCTTAAAGTCATCTGAGGGTGGGAGTTCACTTGTTGGTTTAGGAACAGCACAAAATGTTTGatttaaagaaaaaataaaaaactagagATAAACACACCAGTTTACAAATGTAAATTCAACTCCCGAGGGTTTCATAATGAAGACCATTGACTTTTACTTTCAGCCGTCTGAACTAAATGCAAAGCATCGTCCTCATAGATTCCCTGTACGCCAGCTGTTGCATCAACACACACAGTGAATGTTGCCATTCCCTCTAAGGGGTGACTGAGTCCGCGTTGCAGGAGGACAACAGACTTTTATAGGACTGGACAACATTGGACTGGACAAGACCAACTGTGCAATAAATAGTGAATGTTGCACTCAACCTTTACCAGGATCGTCTTTCTGTCAAGGGGAACGGGGAATACTGGTGACAGGGTGTAACACAACGCAGGGTAATAGCCCACGATACCTACACACCCCCCCGAGTAAAGGGCTTAAATCCCACAGGAAGTGGTATGAATGTTTCATCACAGCATCAGGCGTTCAGGGTCTCTAAGCATCTGTTCCTAACAAAGTCATGAATACTAACCCAGCATCCATAGCAGGAA

Function

symbol description
chst1 Predicted to enable N-acetylglucosamine 6-O-sulfotransferase activity and keratan sulfotransferase activity. Predicted to be involved in N-acetylglucosamine metabolic process and keratan sulfate metabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in trans-Golgi network. Is expressed in central nervous system; otic placode; retina; and retinal inner nuclear layer. Orthologous to human CHST1 (carbohydrate sulfotransferase 1).

NR:

description
carbohydrate sulfotransferase 1-like

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K01022 CHST1; keratan sulfate 6-sulfotransferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981437.1 False 2403 mRNA 0.52 2 89556379 89561287
XM_036981438.1 True 2479 mRNA 0.52 2 89556379 89561289

Neighbor

gene id symbol gene type direction distance location
trnag-ucc NA coding downstream 161405 89394903 ~ 89394974 (-)
LOC110509922 LOC106563534 coding downstream 209948 89317125 ~ 89346431 (-)
LOC110526791 LOC104927744 coding downstream 288887 89227541 ~ 89267492 (-)
LOC110526789 map2k5 coding downstream 444784 88974571 ~ 89111595 (-)
LOC110506978 LOC106587757 coding downstream 591870 88956590 ~ 88964509 (-)
LOC110526793 LOC106587778 coding upstream 396626 89956035 ~ 89965389 (-)
LOC110506981 dh12b coding upstream 695955 90257244 ~ 90267943 (-)
LOC118965054 NA coding upstream 740097 90301386 ~ 90303985 (-)
LOC110506215 ttc17 coding upstream 741829 90303118 ~ 90324307 (-)
trpm5 trpm5 coding upstream 799140 90360429 ~ 90403385 (-)
G557976 NA non-coding downstream 1176 89555003 ~ 89555203 (-)
G557974 NA non-coding downstream 2853 89553182 ~ 89553526 (-)
G557969 NA non-coding downstream 6073 89549234 ~ 89550306 (-)
G557965 NA non-coding downstream 12015 89543895 ~ 89544364 (-)
G557961 NA non-coding downstream 16773 89538492 ~ 89539606 (-)
G557986 NA non-coding upstream 2686 89563975 ~ 89564194 (-)
G558002 NA non-coding upstream 18745 89580034 ~ 89580264 (-)
G558010 NA non-coding upstream 26438 89587727 ~ 89588577 (-)
G558012 NA non-coding upstream 28697 89589986 ~ 89590622 (-)
G558014 NA non-coding upstream 29354 89590643 ~ 89590980 (-)
G557663 NA other downstream 396494 89159224 ~ 89159885 (-)
LOC110526751 LOC106562707 other downstream 1771027 87773201 ~ 87860425 (-)
LOC110513865 LOC106562791 other downstream 2004989 87546236 ~ 87693072 (-)
LOC110506946 LOC106562772 other downstream 2058287 87456447 ~ 87498104 (-)
G555617 NA other downstream 3098414 86455124 ~ 86457965 (-)
G558051 NA other upstream 60059 89621348 ~ 89621755 (-)
G558124 NA other upstream 159186 89720475 ~ 89722021 (-)
G558246 LOC106562569 other upstream 304679 89865968 ~ 89868057 (-)
G558339 LOC106587697 other upstream 412893 89974182 ~ 89981624 (-)
G559123 NA other upstream 1361809 90923098 ~ 90923835 (-)

Expression


Co-expression Network