LOC110526793 (LOC106587778)


Basic Information

Item Value
gene id LOC110526793
gene name LOC106587778
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 89956035 ~ 89965389 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981443.1
TCTCAGTATAAAAAAAGTTGAGCTACACCCTTCAAACCAGTTCAGTCATCCCACAGACACTCCTAGGAAAACAAGCCAGCCTTCTTGGGAACTGAACCACAGAGCACAGCAGTACAcattctctcatctctccctcgatGCCTATCTCTGATCTCAGGATGTGGACTCTACTGCTTGGGGTTATTTTCGGACTTCTGGCACCTGTTCAGTCCGACCCTGTTCCTGCCCCGACAGAACCTCCCGCTCTGGCTGCTGGGGATTTTCTTGGAGAAACTTTCAAGATCTTCAAGAAGCTTGTAGTGGGTCCCCCGGATGCCACCAATGGAACATCCAGCAGTGACGAAACAGTGGACCTTGATCATTTGGTGACCCCTGACCCTGTGACATCTGACCCGGAAGACCAGCTGCCCACCTTTGACCCAGAGGAGGGCAGCACAGATGAGACAGAGGGCAGCACTACAGAGGGAAGTATGAAACACCCCACTTCAGGACAAGACGATGAAGGGGAGCTGTTTGACGCCAACCTTAAACCTAGCTTTAACCTCCACCCCAGTCCAAGTCCTCGCCCCAGTCCAACTCCTCGCCCCAGTCAAAGCAACACAGAGGACAATTATGAAAAGTACGACTATGATTCCAGTCCAAGTGATAGACCTGATTCACCAGAGGAAGATGAAATTATCCTGGATACTGAAAGCCCCACAGCAGAGTTTGTCCCCACAGTAGAGTTTGTCCCCACAGTAGAGTTTGTCCCCACAGCAGAGTTTGTCCCCACAGTAGAGTTTGTCCCCACAGCAGAGGTTGTCCCCACAGTAGAGTTTGTCCCCACAGCAGAGTTTATCCCCACAGTAGAGTTTGTCCCCACAGCAGAGTTTGTCCCCACAGCAGAGTTTGTCCCCACAGCAGAGTTTGTCCCCACAGTAGAGTTTGTCCCCACAGTAGAGTTTGTCCCCACAGCAGAGTTTGTCCCCACAGCAGAGTTTGTCCCCACAGCAGAGTTTGTCCCCACAGCAGAGGTTGTCCCCACAGTAGAGTTTGTCCCCACAGCTGATTTTCAGATGGATTTGGAAGATGTTAACGCAATCCTTGACGCTAACCCCAGCCCCAGTCCTTATCCAACTCATGACGCTAACCCCAGCACCAGTCCTTATCCAACTCATGATGCTAGCACCACAACAGAGCTAGAGGAGTTGGAGGACGATAAATTCAGACCAAACTTTGTCGCCAGCCCTAGTCGTGTACCGGATCCCAGTCCCAGCCATAGTCCCATCTCAGAGTTTGAAGAAGAAGACCTGTTACCTCTTAGCCTTGATCCAAGCTTTAGTACCACCTCCAGACCTAGCCAAAGTTCGGGCACCAGCCATACACCTAGTTCTAACCTAACCAGTATGACAGGCTTGGAGGAAGGCGGGGCTGCAGAGATGAATACAGAGCTGGCCTTCACCCCAACCACCAGTTCTGCTGCACCTACAACAGTCAGGATGAATTCAGACATCGAAGGGTCAGGGTCGGGATTCCTGCCTCAGAGTAGCACCACAGTAGCAGCCCCTGCTGGAGAGGAGGACCAAACATACAACTCCCTAGTTGATAAGCCATTCATTGAAACAAAGACAAGAATTCAAGGCAGCAATAGGCTTGCTCTACCAAGGGAGGAACCGGCAGTGGATTCCtctacagTTCTTCATGATGCAGCTGCTGTAAAACCAACCCCATCCAGACAACATGATTCATATACATCGGgttgGTTGATCATCGTTGCCTTCGTCGCGGGCGTGGCAGTCTTGGTCGTAATCTGTGTCGCCATAGGTACCAGAGACAGGTGGAATGCACCGGCCCAGGCATCTGAGAAGAAGGTCGCCAACGCGAGCTCAGGAGATGAGAAGGCGGAGCGGGAAATGGAGAGGTTTCTGTCTAAAGAGAGGCCGAGGGAAAACACCCACGCTGGAGAGTACACTGTTATACTTCTGGAGGACCTCCCAGAGAAAGAGCCGCTGGACTGAGACGGGCCAAGGAGATGCAGAACGGGGACAAAATAAGAACAACGAACACCTGAGAAATAGAATGGAACGGGTCTCCCCATTCTAGTCAATGGTGGCATAATGGGTGGCATAATGggtggcataatgggtggactcccccccattcttgacacacacaggaaactgttgagtgtgaaaaacccagcagcgttgtagttcttgac
>TU632907
TAATATTCTGTCCCTTCAAAGCTCTTGTGTTCATAATGGGTGGCATTCAGCATTGAGATCCTTGTACTTTACTCATACTTCTGTGTAAATCATTCATTGATGTCAATGGAAGGCTTGCACAAAGGTATTGGGTTGTCCAGTCTGAATACATCCCATTGTATCTGTTAGCAGAGTGGGCTAGGGCATGTCCATTGTATCTGTTAGCAGAGTGGGATAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGATAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGATAGGACATGTCCATTGTAACTGTTAGCAGAGTGGGATAGGACTTGTCCATTGTATCTGTTAGCAGAGTGGGATAGGGCATGTCCATTGTATCTGTTAGCAGAGTGGGCTAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGCTAGGGCATGTCCATTGTATCTGTTAGCAGAGTGGGCTAGGGCATGTCCATTGTATCTGTTAGCAGAGTGGGCTAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGATAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGATAGGGCATGTCCATTGTATCTGTTAGCAGAGTGGGCTAGGACATGTCTGTTGTATCTGTTAGCAGAGTGGGCTAGGGCATGTCTGTTGTATCTGTTAGCAGAGTGGGATAGGGCATGTCTGTTGTATCTGTTAGCAGAGTGGGCTAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGCTAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGATAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGATAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGCTAGGACATGTCTGTTGTATCTGTTAGCAGAGTGGGCTAGGGCATGTCTGTTGTATCTGTTAGCAGAGTGGGATAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGCTAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGCTAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGATAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGCTAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGATAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGCTAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGATAGGGCATGTCCATTGTATCTGTTAGCAGAGTGGGATAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGATAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGCTAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGATAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGCTAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGATAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGATAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGATAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGATAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGATAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGATAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGATAGGACATGTCCATTGTATCTGTTAGCAGAGTGGGATAGGGCATGTCCATTGTATCTGTTGAACACACTATTGAACACATCTCTTTGAGTGTGAATTGTAGTTAATCTTTCTCTATTTCCACAGTTCTTCATGATGCAGCTGCTGTAAAACCAACCCCATCCAGACAACATGATTCATATACATCGGgttgGTTGATCATCGTTGCCTTCGTCGCGGGCGTGGCAGTCTTGGTCGTAATCTGTGTCGCCATAGGTACCAGAGACAGGTGGAATGCACCGGCCCAGGCATCTGAGAAGAAGGTCGCCAACGCGAGCTCAGGAGATGAGAAGGCGGAGCGGGAAATGGAGAGGTTTCTGTCTAAAGAGAGGCCGAGGGAAAACACCCACGCTGGAGAGTACACTGTTATACTTCTGGAGGACCTCCCAGAGAAAGAGCCGCTGGACTGAGACGGGCCAAGGAGATGCAGAACGGGGACAAAATAAGAACAACGAACACCTGAGAAATAGAATGGAACGGGTCTCCCCATTCTAGTCAATGGTGGCATAATGGGTGGCATAATGggtggcataatgggtggactcccccccattcttgacacacacaggaaactgttgagtgtgaaaaacccagcagcgttgtagttcttgacacaaacgggtgcacctggcacctacgctgttcaaaggcacttaaatattttgtcttgcccattcaccctctgaatggctcacatacacaatccatgtctcaattgtctcaaagcacaatccagtctcctccccttcttctacactgattgaagtgaatttaacaagtgacatcaataagggatcatggctttcacctggattcacctggtcagtctatgtcatggaaacatTTCTCACAGCAGGGAAAGAATCCTGCAGCAACTGGAAATGTGAAtgattgtgtggattataattaatggacatttttgtaggggttgataatgCATTTTTGTACTTacggcaaatcaagtctgacatttttaagtggaaattacaaactttagaactcttttaaactttgaataactacaagtttgcatttcctaccTTGCAGGAAATTTGCTGCAACAAccgggtgatcaaattaagaccctacatcTGTAGCTAGTGATTCCTGATTCTATGACTATGAATGGAGACATTCTAGAATGTATGTGGGACACGTCTGTGGCGTGTGAGTTTGAACTGTCCCTTTGACCTTTGGCAGCCCAGATAAGTCATATTGATTAACACCTGTTCCGATGGGCCATGGATAAACACGTTGCTATATCTCTGTTGACATTATGTATATTATCAAAGTTACAAACACTGTCAGAACCATtgatagaaaaaaagaaaacaaggtCATACTGAATTTCTAATTCTCACTCACCGACcagtgttgttgtggttgttgttgttattgttattgttgttgttgttgttgttgttgttggtggtgttatTTTTGTTTTGATATTGCACTATTTTTTATCAACAAATCTTATTTGTGTACATGTTTTTGATCATCCTGTAAAAGAAAATACAGAATCCATACAGAATATAAAAGATTGTCTTTCTAGATGTTTCATAGTGACACACTCAGGGACTCACATAAGTGCTACACAGCCAGAATAAGTCAAGTATAGTAGAAAGACTTAATACCAACCTACTTAGAGCCCTGCTTTTCACTACATTTCCCCTGGGGGTAAAATCCTGCTGACTGTGGCATTACGTATTGTTCAGATGAATGCCGGTATGTGAGTTATAGTAAGTATAATATACTTTATACTTCATATGGAAGCGTTTTAAACACTCAGAGTTCTTCTAGTGTTAGACAGCTGTATGATGCTCAGTGCATAGCTACTGCTGCAGTATAATGGATGCATTTTAAACACTCAGAGTTCTTCTAGTGTTAGACAGCTGTATGATGCTCAGTGCATAGCTACTGCTGCAGTATAATGGAAGCATTTTA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106612145

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981443.1 False 2200 mRNA 0.52 5 89957915 89965389
TU632907 True 3602 lncRNA 0.43 4 89956035 89960472

Neighbor

gene id symbol gene type direction distance location
LOC118964962 chst1 coding downstream 396626 89556379 ~ 89561289 (-)
trnag-ucc NA coding downstream 562941 89394903 ~ 89394974 (-)
LOC110509922 LOC106563534 coding downstream 611484 89317125 ~ 89346431 (-)
LOC110526791 LOC104927744 coding downstream 690423 89227541 ~ 89267492 (-)
LOC110526789 map2k5 coding downstream 846320 88974571 ~ 89111595 (-)
LOC110506981 dh12b coding upstream 291855 90257244 ~ 90267943 (-)
LOC118965054 NA coding upstream 335997 90301386 ~ 90303985 (-)
LOC110506215 ttc17 coding upstream 337729 90303118 ~ 90324307 (-)
trpm5 trpm5 coding upstream 395040 90360429 ~ 90403385 (-)
LOC118936665 kcnq1 coding upstream 480495 90445884 ~ 90495091 (-)
G558320 NA non-coding downstream 2827 89953593 ~ 89955088 (-)
G558348 NA non-coding downstream 7465 89948864 ~ 89950450 (-)
G558323 NA non-coding downstream 61000 89896609 ~ 89896915 (-)
G558245 NA non-coding downstream 94490 89863180 ~ 89863425 (-)
G558235 NA non-coding downstream 101209 89856417 ~ 89856706 (-)
G558339 LOC106587697 non-coding upstream 9989 89974182 ~ 89981624 (-)
G558355 NA non-coding upstream 17079 89982468 ~ 89982700 (-)
G558356 NA non-coding upstream 17565 89982954 ~ 89983208 (-)
G558360 NA non-coding upstream 27539 89992928 ~ 89993610 (-)
G558364 NA non-coding upstream 37670 90003059 ~ 90003368 (-)
G558246 LOC106562569 other downstream 89858 89865968 ~ 89868057 (-)
G558124 NA other downstream 236761 89720475 ~ 89722021 (-)
G558051 NA other downstream 336160 89621348 ~ 89621755 (-)
G557663 NA other downstream 798030 89159224 ~ 89159885 (-)
LOC110526751 LOC106562707 other downstream 2172563 87773201 ~ 87860425 (-)
G559123 NA other upstream 957709 90923098 ~ 90923835 (-)
G559162 NA other upstream 1025441 90990830 ~ 90992177 (-)
G559163 NA other upstream 1027047 90992436 ~ 90992949 (-)
LOC110511526 LOC106592072 other upstream 1291116 91248205 ~ 91286961 (-)

Expression


Co-expression Network