LOC118964964 (LOC106562578)


Basic Information

Item Value
gene id LOC118964964
gene name LOC106562578
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 90324347 ~ 90329324 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981452.1
TCCTGTGTGTCACTtccttgtttattttttttacattcctTGGTCTAATAGTTGTTAGCTAAAACTAGCTACCGAGCAAAAATGCCAGGACGTTGTTCAGCTTTCAACTGTAGGAATACGTTTAAAAATGTTAAACATAAAACAAACAAGGTTACATTTCACAGCTTTCCAAAGCGTGATCCTAAACGAATAAAAGAGTGGGTGGGTCAGATGAAATGGAAAGACTGGCAGCCAACCCCTCATTCCTTACTGTGCTCAGAGCATTTTGAGGAGAGGTGCATGGATAGAACTGGGCAGACAGTGCGTTTACGTGATGATGCAATACCAACTATCTTTGCCTTTCCTAGTCACCTACAAAAAAAGGTATTTAGTAAATTGAGGCAGTTTCAGAAAACAGCCGGAAGGAGGAAAAGAGTAACCTTGTTTCCAGAGGATCCTGTTCCTGAGGAGTCGACACAACGGGAGAAGTCTCCACCCACCTACTTAAACCACAGTATATGGCACCCAAGTCGTTTCCATGACGACTACTGTGTTCCACAGAGTATTGACTGGGCTGTAAAAGACATGCCTAAAGAAATCCCATCCGCAACTTTAGAAAAGCAAGGTCTGATCTTTATCCCCAAGCACGCAATCAAGATCAAGGAGAAATGGGATTGGCTGACAATGGATGTGAAGGGACCATTTCCAGAGACCAAAAGTAGACACAAGTTTGTACTAACTGTAATGGACTACTACTCCAAATGGATGGAAGCCTACCCCATGAAGACCAACAACAGTAAAGAGATTGCCAAAATCATCTCTGACCTCATCTCTCGCTTTGGCTTCCCTGTTGGAATCCTGTCTTGTTTGACTCGAGCACACATTTTAGAGATCAACTTGGCTTTGGGTGATCTGAAGAAACTGACATGCCAACTCATATTCTACCGTCCTCTGGGAGTGTCATTGGATCCAGTAACAAAGTCCCTTGTAGACCGGTTGGTGTCAGATTTGGTGAAAGAACATCCTGATCGTTGGGATGTTTACCTGGCTGCCAGTGTGTTCAGCTTCTGCTGCAAAGAGCACCCCACCACCAGACAAATACCCCTGTCTCTGCTGCGCTGCGGAGGGACTCAGTCTGTCTCCACCTCACCAAGAAAGCTGCCTGATAATGGGATAAAAGGAAGGACCTTTGTCATACTAGATGCCCAGCCACCTCAAAGGGAAGTCCGTGTGGAGTGCAATCAGTGCAGTCAATGGAGCACGGTCAGCCAGGACTCAGAGCTGAAGAGATATGAGGAGATGAAACTTGGGGAGGAGGACTACACCCACACCTGTGTGAGCTGCAGGGTGGCCATGAGCTGCAGGGTGGCCCTGGAGGTCATGAGGGGTTAGGAGACAAGGACATGAAGAACTGGATGTAAATGAGAAAGCTTTTCAAACAAGGACTGAAAAGATGGAGGATATAATAAGGACGTTGGAAACCAAGTGGTGGTGAAGGAAGAGATTGCTGTTGGAGTGAAAAAAAGGTTCCTAGGGGAAGAAGTTTGAACAACAGGAGTTTATAATGTGTATATACTTACACGTTTCTCAGTCATACACGTTTTTGGAATGAAATAAAAACAGATAGTGTTGTTTTCAAGTTGTGTGTGCTCAAACAGTGGATTATTGTTTAATAATGCATTTGGGCAGACATCTATATACTGCTTCAGTGCTTCATCTATTCCTCTCTGATTTGGGGTATTTTAGAGAATGGGGTAGCTGCAGTCCAATATGGGAACCAGAGTATGGGAGAGTGGGCATGTTGAAAGGACAGGAGTGGGTGTGTTGAAAGGAGCTCTGCTATAGGTTAGTTAGACTGTTGCTTACTGTGACTATCACCTTGATGTTGGCTACTAGGCAGCTACTTCCCACTCTGTTGGgggacagtagacagacagacatttgaTTATGCTGAACTGGGGGGCAGCGGTCTATGGCCCGTGATTTGAAAGGGTCAAAGCGGGGTAGGAGGAGCGCCCTTCTCAAATGGAACAGTAATCTGTGCCGCTGGGTcatgtcaacaaggcagcattgTGCATCGTCTAGAAACATACATCTCTTTTTcataaaatacacatttaaatTAAACTAGTTTCCATTTGGGAAGGCAGatatggtcctctgtagttggtagagcatggtgcttgtaacgcTAGGCTTGAGTTCCTTTCCTGCTCGGAACACccatacataaaatgtatgcacacatga
>XM_036981453.1
TCCTGTGTGTCACTtccttgtttattttttttacattcctTGGTCTAATAGTTGTTAGCTAAAACTAGCTACCGAGCAAAAATGCCAGGACGTTGTTCAGCTTTCAACTGTAGGAATACGTTTAAAAATGTTAAACATAAAACAAACAAGGTTACATTTCACAGCTTTCCAAAGCGTGATCCTAAACGAATAAAAGAGTGGGTGGGTCAGATGAAATGGAAAGACTGGCAGCCAACCCCTCATTCCTTACTGTGCTCAGAGCATTTTGAGGAGAGGTGCATGGATAGAACTGGGCAGACAGTGCGTTTACGTGATGATGCAATACCAACTATCTTTGCCTTTCCTAGTCACCTACAAAAAAAGTTTCAGAAAACAGCCGGAAGGAGGAAAAGAGTAACCTTGTTTCCAGAGGATCCTGTTCCTGAGGAGTCGACACAACGGGAGAAGTCTCCACCCACCTACTTAAACCACAGTATATGGCACCCAAGTCGTTTCCATGACGACTACTGTGTTCCACAGAGTATTGACTGGGCTGTAAAAGACATGCCTAAAGAAATCCCATCCGCAACTTTAGAAAAGCAAGGTCTGATCTTTATCCCCAAGCACGCAATCAAGATCAAGGAGAAATGGGATTGGCTGACAATGGATGTGAAGGGACCATTTCCAGAGACCAAAAGTAGACACAAGTTTGTACTAACTGTAATGGACTACTACTCCAAATGGATGGAAGCCTACCCCATGAAGACCAACAACAGTAAAGAGATTGCCAAAATCATCTCTGACCTCATCTCTCGCTTTGGCTTCCCTGTTGGAATCCTGTCTTGTTTGACTCGAGCACACATTTTAGAGATCAACTTGGCTTTGGGTGATCTGAAGAAACTGACATGCCAACTCATATTCTACCGTCCTCTGGGAGTGTCATTGGATCCAGTAACAAAGTCCCTTGTAGACCGGTTGGTGTCAGATTTGGTGAAAGAACATCCTGATCGTTGGGATGTTTACCTGGCTGCCAGTGTGTTCAGCTTCTGCTGCAAAGAGCACCCCACCACCAGACAAATACCCCTGTCTCTGCTGCGCTGCGGAGGGACTCAGTCTGTCTCCACCTCACCAAGAAAGCTGCCTGATAATGGGATAAAAGGAAGGACCTTTGTCATACTAGATGCCCAGCCACCTCAAAGGGAAGTCCGTGTGGAGTGCAATCAGTGCAGTCAATGGAGCACGGTCAGCCAGGACTCAGAGCTGAAGAGATATGAGGAGATGAAACTTGGGGAGGAGGACTACACCCACACCTGTGTGAGCTGCAGGGTGGCCATGAGCTGCAGGGTGGCCCTGGAGGTCATGAGGGGTTAGGAGACAAGGACATGAAGAACTGGATGTAAATGAGAAAGCTTTTCAAACAAGGACTGAAAAGATGGAGGATATAATAAGGACGTTGGAAACCAAGTGGTGGTGAAGGAAGAGATTGCTGTTGGAGTGAAAAAAAGGTTCCTAGGGGAAGAAGTTTGAACAACAGGAGTTTATAATGTGTATATACTTACACGTTTCTCAGTCATACACGTTTTTGGAATGAAATAAAAACAGATAGTGTTGTTTTCAAGTTGTGTGTGCTCAAACAGTGGATTATTGTTTAATAATGCATTTGGGCAGACATCTATATACTGCTTCAGTGCTTCATCTATTCCTCTCTGATTTGGGGTATTTTAGAGAATGGGGTAGCTGCAGTCCAATATGGGAACCAGAGTATGGGAGAGTGGGCATGTTGAAAGGACAGGAGTGGGTGTGTTGAAAGGAGCTCTGCTATAGGTTAGTTAGACTGTTGCTTACTGTGACTATCACCTTGATGTTGGCTACTAGGCAGCTACTTCCCACTCTGTTGGgggacagtagacagacagacatttgaTTATGCTGAACTGGGGGGCAGCGGTCTATGGCCCGTGATTTGAAAGGGTCAAAGCGGGGTAGGAGGAGCGCCCTTCTCAAATGGAACAGTAATCTGTGCCGCTGGGTcatgtcaacaaggcagcattgTGCATCGTCTAGAAACATACATCTCTTTTTcataaaatacacatttaaatTAAACTAGTTTCCATTTGGGAAGGCAGatatggtcctctgtagttggtagagcatggtgcttgtaacgcTAGGCTTGAGTTCCTTTCCTGCTCGGAACACccatacataaaatgtatgcacacatga
>TU633224
GTCTAATAGTTGTTAGCTAAAACTAGCTACCGAGCAAAAATGCCAGGACGTTGTTCAGCTTTCAACTGTAGGAATACGTTTAAAAATGTTAAACATAAAACAAACAAGGTTACATTTCACAGCTTTCCAAAGCGTGATCCTAAACGAATAAAAGAGTGGGTGGGTCAGATGAAATGGAAAGACTGGCAGCCAACCCCTCATTCCTTACTGTGCTCAGAGCATTTTGAGGAGAGGTGCATGGATAGAACTGGGCAGACAGTGCGTTTACGTGATGATGCAATACCAACTATCTTTGCCTTTCCTAGTCACCTACAAAAAAAGTTTCAGAAAACAGCCGGAAGGAGGAAAAGAGTAACCTTGTTTCCAGAGGATCCTGTTCCTGAGGAGTCGACACAACGGGAGAAGTCTCCACCCACCTACTTAAACCACAGTATATGGCACCCAAGTCGTTTCCATGACGACTACTGTGTTCCACAGAGTATTGACTGGGCTGTAAAAGACATGCCTAAAGAAGTAAGTTGTGAGTTAGCCCTCATTATGAAGCTAATTGAGCTCCTCATTATGAAGCTGATTGAG

Function

NR:

description
uncharacterized protein LOC110506985 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981452.1 False 2229 mRNA 0.45 10 90324347 90329324
XM_036981453.1 False 2208 mRNA 0.45 10 90324347 90329324
TU633224 True 576 TUCP 0.43 5 90324389 90326260

Neighbor

gene id symbol gene type direction distance location
LOC118964963 LOC106593359 coding upstream 238383 90046157 ~ 90085964 (+)
LOC118936341 apip coding upstream 342669 89973608 ~ 89981678 (+)
LOC110527005 LOC106587903 coding upstream 373731 89933223 ~ 89950616 (+)
LOC110513766 LOC106593737 coding upstream 410490 89895320 ~ 89913857 (+)
LOC118965053 LOC106562510 coding upstream 431820 89882672 ~ 89892527 (+)
LOC110506986 LOC106592686 coding downstream 2233 90331557 ~ 90345643 (+)
LOC110506983 traf6 coding downstream 16459 90345783 ~ 90354922 (+)
LOC118964965 LOC106562863 coding downstream 89125 90417861 ~ 90424832 (+)
LOC110506992 LOC106562470 coding downstream 112182 90441506 ~ 90442666 (+)
LOC110526798 cars coding downstream 346191 90675515 ~ 90698529 (+)
G558576 ttc17 non-coding upstream 10622 90313260 ~ 90313725 (+)
G558575 NA non-coding upstream 11757 90311778 ~ 90312590 (+)
G558568 NA non-coding upstream 19880 90301409 ~ 90304467 (+)
G558555 NA non-coding upstream 32902 90291244 ~ 90291445 (+)
G558554 NA non-coding upstream 35470 90287872 ~ 90288877 (+)
G558561 NA non-coding downstream 25702 90355026 ~ 90356960 (+)
G558565 NA non-coding downstream 28691 90358015 ~ 90358533 (+)
G558567 NA non-coding downstream 30097 90359421 ~ 90360184 (+)
G558538 NA other upstream 64179 90259612 ~ 90260168 (+)
G558474 NA other upstream 198492 90125189 ~ 90125855 (+)
G557654 NA other upstream 1182791 89141229 ~ 89141556 (+)
G557562 NA other upstream 1289087 89034810 ~ 89035260 (+)
G558624 LOC106562471 other downstream 116778 90446102 ~ 90447856 (+)
LOC110527007 pex16 other downstream 385367 90714625 ~ 90727022 (+)
LOC110526809 LOC106562822 other downstream 508897 90838122 ~ 90932867 (+)
G559027 NA other downstream 607593 90936917 ~ 90938074 (+)

Expression


Co-expression Network