LOC110526798 (cars)


Basic Information

Item Value
gene id LOC110526798
gene name cars
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 90675515 ~ 90698529 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981469.1
tagtgacgaccataAAAAAACGGGAGGCAACGGGGGTGTCCAGAGAATACAGCCATTGgtctagactagactagagagagagagagagtacgtcCGGGCACGTTATTGTTGCATCAGAAATTGCAGACTGTTGACATGTCAAGCTCGGGAGAGTTAGtaaaGGGAAAGAGGGTCCAGCACCCCTGGGCTGCCCCAGCCGGGTCCAACCTGCCAAAGCTGCGACTCTACAACAGCCTCACACGCACCAAGGAGCTGTTTGTTCCCCAGAATGGAAACAAGGTGTCGTGGTACTGCTGCGGACCCACTGTCTATGATGCCTCTCACATGGGACATGCCAGATCGTACATATCTTTTGATATCCTCCGGAGGATTCTGATGAACTATTTCCAATATGACGTGTTCTACTGCATGAACATTACGGACATAGATGACAAGATCATCAGGCGGGCCAGACAGAACTACCTTCTGGAACAGTACAGAGAGAAGAAGCCAGCGGCTGCCCAGGTACTGCAGGATGTCCTTAGTGCCAGAGGGCCCTTCCAGGCCAAGCTGGCCGAGACCACAGACCCAGACAAGAAACAGATGCTGGAGAGGCTGGACTCTGCCGTCGCTGCTGCTCTGGGACCCCTGCAGGGGGCGGTGGAGAGCAAGGCTGGGGAGGCTGACATACAACGCCTGGCTCAGGTGTTACTGGAGAAGGCCAAAGACCTGCTGTCTGATTGGTTGGATGCTCAATTTGGCAGTCAGGTGACCGAGAACTCCATCTTCTCTCTTCTTCCAAAGTTCTGGGAAGGGGAGTACCACAACGACATGGACGCCTTGAATgtccTTCCCCCAGACATACTCACCCGCGTCAGCGAGTACTGCCCAGAGATCGTGGACTTTGTGAAGAAGATCCTAGACAATGGCTTCGGGTACGAGTCCAACGGCTCAGTTTATTTTGACACAGCCAAGTTTGCCACCAGCCAGAAGCACGCGTACGGCAAGCTGGTACCTGAGGCGGTCGGCGACATGAAAGCTCTGCAGGAGGGAGAGGGAGATCTGAGTGTCTCAGCAGACCAGCTCAGTGAGAAGAGGTCGCAGAATGACTTTGCCCTGTGGAAGGCCTCTAAGCCGGGGGAGCCGTCCTGGGACTCACCCTGGGGAAAGGGTCGGCCTGGCTGGCATATCGAATGTTCCGCTATGGCTGGTTCCATCTTGGGAGAGTCCATGGACATCCACGGGGGAGGGTTTGACCTCCGATTCCCCCATCACGATAACGAGTTGGCTCAGTCCGAGGCTTACTTTGAGAACGACCACTGGGTTCGCTACTTCCTGCACACTGGTCACCTGACCATCGCAGGCTGCAAGATGTCCAAATCTCTCAAGAACTTCATCACCATCAAGGATGCCCTGGCGAAGAACACAGCTCGGCAGCTCCGTCTAGCCTTCCTGATGCATTCCTGGAAGGACACCCTGGATTACTCCTCCAACACCATGGAATCGGCTGTCCACTACGAGAAATTCCTGAATGAGTTTTTCCTCAACGTCAAAGACATTCTCCGAGCTCCCTGTGACATCACCGGACAGTTTGAGAAGTGGGAGGCAGCAGAGATGGAGCTCAacgagagTTTCTATGAGAGGAAGGCAGCAATCCACGCGGCGCTGTGTGACAACGTGGACACGCGCAGCACCATGGAGGAGATGAGGGTGCTGGTAACTCAGAGCAACACCTACATAGCCAGTAGGAAGAGCTCCAAGCTACAGCCCAACCGCATGCTGATGAAGAGCATCGCTCTCTACCTGACTGACATGCTCAAGACCTTTGGGGCCATTGAAGGGAGCGAGCCTATTGGATTCCCAGTGGGAGGAGATGGTCACCATGTGGATATGGAGACCACAGTGATGCCCTATCTGAAGGTGCTGTCAGACTTCAGAGAATCTGTTCGCAAAATTGCCAGAGAACAGAATGTGACAGAGGTTCTACAGCTGTGTGACGTGGTCCGTAATGACACCTTACCTGAGCTGGGGGTGCGTCTAGAAGACCATGAAGGCCTTCCCACTGTGGTGAAGCTGGTGGATAAAGAGACCCTGCTGAGGGAGAGGAATGAGAAAAAGAAGATGGAGGACGAGAAGAAGAACAAGAAAGAGGAGGCTGCCAAGAAGAAGCAGGAGCAAGAGTTGGCCAAACTTGCGAAGATGAAAATCTCCCCGTGCGATATGTTCCGCTCTGAAACCGACAAGTATTCCAGCTTTGATGAGACGGGTTTCCCCACGCATGACGTGGAGGGGAAGGATCTCAGTAAAGGACAGACCAAGAAGCTGCGGAAACTCCACGAGGCCCAGGAGAAACTGCACCAAGAGTATCTCCAGACCAATCAAAATGGCTGCTGAGAGTCCTGGGCCTCGTTCAGTTGTCAAACGTTCTGGAATGTCGCAGATGGTTACGCCACTATTGTAGTCAACATGATTCCTGaatctacatgtcagagagaagcatgtttgttctacattgcatatttctatctgaacgttcccGAAACGTTGTGTCCTGCTGAACACGCCCCCTGGAGGACGCTGCTCCGCCCCATCCCGCGCTCCGCCCATAGCGATAGTTCTGTCCTCATTTGTCGTTATTCAGTTCCtccaataatttttttttttttttgctaaatcAACAAATTCCCTGCATATTATGTGAGGGCTTGCAAATTTGACCAATCACCACACTATCTCCGAATAAAGCAGTCAAATCGTCGCAATATTATCGCATAAAATGTACCCATCACCGCAGTACAAAGAGAGCTTGCAATTTCAACCAATCACCTCACATTTACCGCGTAATATAGTTCATTCAAGCCACACGACAAAACTTTTCCCTCATCAGTGTATTTTCCAGACCAATTGGATAAAATCATCGTATATCGCCATGCAGAATTGCAGCGGCAAAATAAACcttatttttttctctcagaAAATTACACAAAAAAAATCACTGTGAATTCCTGGAGGGCCTGACTATTGGTGAGGCTGAGGCCAGAGAGACCCTGGGTGTGTTTCAATAGTCTAAAGAATGatctcctcgtctcctcttctcctgaGTGGACAGGTCAGGACGGCGAAGGGttcttttctttctcctctccacctcttttagAGCAGGTGAAAGGTGAGGAGATTAAACCACATTCGACTATTGAGGTGCCTCCACTCTCCCAGTGTTTTTAAGACCTTGAGACACAACCTGGGCTCCTTTGCACTGCACTCCATGGGGTCACTTTTAAAGGGTAATTGATCTGTAATTGatcaattttttttgttttgtttttgtgatTGACTGCAACTACAGTTCGGATTCAGTTACTTTCCTACAGCTAAGATTGGTATTGATAACCTCAGTTTCACTCGTTATAGCTTTAACTAAATTGCGTGCCAAAATGAACTCTGCGTAAAACCACGCCTCGGGGGGGGTAGTCGATAGCGACGCTAAAGTGTGTCTGTGGTTGCTTTGGCAACGTAATAATAACCTCCTATTTGTAGTTGTAGACACTCCCTGGCCCGACGACAAccttgcaagctgaagaaaatGATGACATTCAGGTGAACTCTCCCTGTAGACAACAGTCTGTTGAAAGGGAAAAGGAGTCCTCTGAAACCCTTTGTTGGCCCAGGCTTCCATGTGCTGTAGATGGACTCGTCACACAGTGATCGTTTTAGCTCTCCACTACAAACTGCTATTCAGGGCTGTTATTGGTTGGCAGCGTGTCCTACAACCGTCCAGTGAGGtttcatttccctctctctccaccatgaCTACATATCATTCCTTTTTTAAATTCTGATATTATGACTGAGAGGACAGTGAAGTTGATACACAGTGAAGTTGAATTAATGCACGATTGCAATGCAGAGATGATCAGAAACATTTGTTCCAGAGGCTTCCTTGGGGGTTTTGGTCTTTCACATGACAAAATAACATGCTTTGGTGCAGGTGTTAGTTAGGCATGTTGCAACGGTAGCAGAGGGATGAGAAATCTTTTATAGGAATATGGAATTTGTGAGACCttgaaataaacatttaaaataaagatttttaaccaaa
>XM_036981468.1
tgacgaccataAAAAAACGGGAGGCAACGGGGGTGTCCAGAGAATACAGCCATTGgtctagactagactagagagagagagagagtacgtcCGGGCACGTTATTGTTGCATCAGAAATTGCAGACTGTTGACATGTCAAGCTCGGGAGAGTTAGCCTTTGATTATGGCTTCTTGCTGCACACAAGTGAGGAGGCCACAGCCACCGTGGCTCTGAATGAGTACCTGAGCTCCCGCAGCTACCTGGCTGGGTTCAGCCCCTCTCGGGTGGACCAGGAGGTCTTTGAGCTCCTGCACAGGCCCCCGGCCCCGCAGCACGTGCACGCTCTGCGCTGGTACAGGCACATAGCAGCCCTGCAGCGGGAGACCCCCAGCCCAGATAGCAGCAtaaaGGGAAAGAGGGTCCAGCACCCCTGGGCTGCCCCAGCCGGGTCCAACCTGCCAAAGCTGCGACTCTACAACAGCCTCACACGCACCAAGGAGCTGTTTGTTCCCCAGAATGGAAACAAGGTGTCGTGGTACTGCTGCGGACCCACTGTCTATGATGCCTCTCACATGGGACATGCCAGATCGTACATATCTTTTGATATCCTCCGGAGGATTCTGATGAACTATTTCCAATATGACGTGTTCTACTGCATGAACATTACGGACATAGATGACAAGATCATCAGGCGGGCCAGACAGAACTACCTTCTGGAACAGTACAGAGAGAAGAAGCCAGCGGCTGCCCAGGTACTGCAGGATGTCCTTAGTGCCAGAGGGCCCTTCCAGGCCAAGCTGGCCGAGACCACAGACCCAGACAAGAAACAGATGCTGGAGAGGCTGGACTCTGCCGTCGCTGCTGCTCTGGGACCCCTGCAGGGGGCGGTGGAGAGCAAGGCTGGGGAGGCTGACATACAACGCCTGGCTCAGGTGTTACTGGAGAAGGCCAAAGACCTGCTGTCTGATTGGTTGGATGCTCAATTTGGCAGTCAGGTGACCGAGAACTCCATCTTCTCTCTTCTTCCAAAGTTCTGGGAAGGGGAGTACCACAACGACATGGACGCCTTGAATgtccTTCCCCCAGACATACTCACCCGCGTCAGCGAGTACTGCCCAGAGATCGTGGACTTTGTGAAGAAGATCCTAGACAATGGCTTCGGGTACGAGTCCAACGGCTCAGTTTATTTTGACACAGCCAAGTTTGCCACCAGCCAGAAGCACGCGTACGGCAAGCTGGTACCTGAGGCGGTCGGCGACATGAAAGCTCTGCAGGAGGGAGAGGGAGATCTGAGTGTCTCAGCAGACCAGCTCAGTGAGAAGAGGTCGCAGAATGACTTTGCCCTGTGGAAGGCCTCTAAGCCGGGGGAGCCGTCCTGGGACTCACCCTGGGGAAAGGGTCGGCCTGGCTGGCATATCGAATGTTCCGCTATGGCTGGTTCCATCTTGGGAGAGTCCATGGACATCCACGGGGGAGGGTTTGACCTCCGATTCCCCCATCACGATAACGAGTTGGCTCAGTCCGAGGCTTACTTTGAGAACGACCACTGGGTTCGCTACTTCCTGCACACTGGTCACCTGACCATCGCAGGCTGCAAGATGTCCAAATCTCTCAAGAACTTCATCACCATCAAGGATGCCCTGGCGAAGAACACAGCTCGGCAGCTCCGTCTAGCCTTCCTGATGCATTCCTGGAAGGACACCCTGGATTACTCCTCCAACACCATGGAATCGGCTGTCCACTACGAGAAATTCCTGAATGAGTTTTTCCTCAACGTCAAAGACATTCTCCGAGCTCCCTGTGACATCACCGGACAGTTTGAGAAGTGGGAGGCAGCAGAGATGGAGCTCAacgagagTTTCTATGAGAGGAAGGCAGCAATCCACGCGGCGCTGTGTGACAACGTGGACACGCGCAGCACCATGGAGGAGATGAGGGTGCTGGTAACTCAGAGCAACACCTACATAGCCAGTAGGAAGAGCTCCAAGCTACAGCCCAACCGCATGCTGATGAAGAGCATCGCTCTCTACCTGACTGACATGCTCAAGACCTTTGGGGCCATTGAAGGGAGCGAGCCTATTGGATTCCCAGTGGGAGGAGATGGTCACCATGTGGATATGGAGACCACAGTGATGCCCTATCTGAAGGTGCTGTCAGACTTCAGAGAATCTGTTCGCAAAATTGCCAGAGAACAGAATGTGACAGAGGTTCTACAGCTGTGTGACGTGGTCCGTAATGACACCTTACCTGAGCTGGGGGTGCGTCTAGAAGACCATGAAGGCCTTCCCACTGTGGTGAAGCTGGTGGATAAAGAGACCCTGCTGAGGGAGAGGAATGAGAAAAAGAAGATGGAGGACGAGAAGAAGAACAAGAAAGAGGAGGCTGCCAAGAAGAAGCAGGAGCAAGAGTTGGCCAAACTTGCGAAGATGAAAATCTCCCCGTGCGATATGTTCCGCTCTGAAACCGACAAGTATTCCAGCTTTGATGAGACGGGTTTCCCCACGCATGACGTGGAGGGGAAGGATCTCAGTAAAGGACAGACCAAGAAGCTGCGGAAACTCCACGAGGCCCAGGAGAAACTGCACCAAGAGTATCTCCAGACCAATCAAAATGGCTGCTGAGAGTCCTGGGCCTCGTTCAGTTGTCAAACGTTCTGGAATGTCGCAGATGGTTACGCCACTATTGTAGTCAACATGATTCCTGaatctacatgtcagagagaagcatgtttgttctacattgcatatttctatctgaacgttcccGAAACGTTGTGTCCTGCTGAACACGCCCCCTGGAGGACGCTGCTCCGCCCCATCCCGCGCTCCGCCCATAGCGATAGTTCTGTCCTCATTTGTCGTTATTCAGTTCCtccaataatttttttttttttttgctaaatcAACAAATTCCCTGCATATTATGTGAGGGCTTGCAAATTTGACCAATCACCACACTATCTCCGAATAAAGCAGTCAAATCGTCGCAATATTATCGCATAAAATGTACCCATCACCGCAGTACAAAGAGAGCTTGCAATTTCAACCAATCACCTCACATTTACCGCGTAATATAGTTCATTCAAGCCACACGACAAAACTTTTCCCTCATCAGTGTATTTTCCAGACCAATTGGATAAAATCATCGTATATCGCCATGCAGAATTGCAGCGGCAAAATAAACcttatttttttctctcagaAAATTACACAAAAAAAATCACTGTGAATTCCTGGAGGGCCTGACTATTGGTGAGGCTGAGGCCAGAGAGACCCTGGGTGTGTTTCAATAGTCTAAAGAATGatctcctcgtctcctcttctcctgaGTGGACAGGTCAGGACGGCGAAGGGttcttttctttctcctctccacctcttttagAGCAGGTGAAAGGTGAGGAGATTAAACCACATTCGACTATTGAGGTGCCTCCACTCTCCCAGTGTTTTTAAGACCTTGAGACACAACCTGGGCTCCTTTGCACTGCACTCCATGGGGTCACTTTTAAAGGGTAATTGATCTGTAATTGatcaattttttttgttttgtttttgtgatTGACTGCAACTACAGTTCGGATTCAGTTACTTTCCTACAGCTAAGATTGGTATTGATAACCTCAGTTTCACTCGTTATAGCTTTAACTAAATTGCGTGCCAAAATGAACTCTGCGTAAAACCACGCCTCGGGGGGGGTAGTCGATAGCGACGCTAAAGTGTGTCTGTGGTTGCTTTGGCAACGTAATAATAACCTCCTATTTGTAGTTGTAGACACTCCCTGGCCCGACGACAAccttgcaagctgaagaaaatGATGACATTCAGGTGAACTCTCCCTGTAGACAACAGTCTGTTGAAAGGGAAAAGGAGTCCTCTGAAACCCTTTGTTGGCCCAGGCTTCCATGTGCTGTAGATGGACTCGTCACACAGTGATCGTTTTAGCTCTCCACTACAAACTGCTATTCAGGGCTGTTATTGGTTGGCAGCGTGTCCTACAACCGTCCAGTGAGGtttcatttccctctctctccaccatgaCTACATATCATTCCTTTTTTAAATTCTGATATTATGACTGAGAGGACAGTGAAGTTGATACACAGTGAAGTTGAATTAATGCACGATTGCAATGCAGAGATGATCAGAAACATTTGTTCCAGAGGCTTCCTTGGGGGTTTTGGTCTTTCACATGACAAAATAACATGCTTTGGTGCAGGTGTTAGTTAGGCATGTTGCAACGGTAGCAGAGGGATGAGAAATCTTTTATAGGAATATGGAATTTGTGAGACCttgaaataaacatttaaaataaagatttttaaccaaa
>TU633636
GTTACTTTCCTACAGCTAAGATTGGTATTGATAACCTCAGTTTCACTCGTTATAGCTTTAACTAAATTGCGTGCCAAAATGAACTCTGCGTAAAACCACGCCTCGGGGGGGGTAGTCGATAGCGACGCTAAAGTGTGTCTGTGGTTGCTTTGGCAACGTAATAATAACCTCCTATTTGTAGTTGTAGACACTCCCTGGCCCGACGACAAccttgcaagctgaagaaaatGATGACATTCAGGTGAACTCTCCCTGTAGACAACAGTCTGTTGAAAGGGAAAAGGAGTCCTCTGAAACCCTTTGTTGGCCCAGGCTTCCATGTGCTGTAGATGGACTCGTCACACAGTGATCGTTTTAGCTCTCCACTACAAACTGCTATTCAGGGCTGTTATTGGTTGGCAGCGTGTCCTACAACCGTCCAGTGAGGtttcatttccctctctctccaccatgaCTACATATCATTCCTTTTTTAAATTCTGATATTATGACTGAGAGGACAGTGAAGTTGATACACAGTGAAGTTGAATTAATGCACGATTGCAATGCAGAGATGATCAGAAACATTTGTTCCAGAGGCTTCCTTGGGGGTTTTGGTCTTTCACATGACAAAATAACATGCTTTGGTGCAGGTGTTAGTTAGGCATGTTGCAACGGTAGCAGAGGGATGAGAAATCTTTTATAGGAATATGGAATTTGTGAGACCttgaaataaacatttaaaataaagattttta

Function

symbol description
cars Predicted to enable several functions, including ATP binding activity; cysteine-tRNA ligase activity; and protein homodimerization activity. Predicted to be involved in cysteinyl-tRNA aminoacylation. Predicted to be located in cytosol. Predicted to be active in cytoplasm. Orthologous to human CARS1 (cysteinyl-tRNA synthetase 1).

GO:

id name namespace
GO:0006423 cysteinyl-tRNA aminoacylation biological_process
GO:0005829 cytosol cellular_component
GO:0004817 cysteine-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981469.1 False 4081 mRNA 0.49 20 90675515 90698529
XM_036981468.1 False 4309 mRNA 0.50 21 90675518 90698529
TU633636 True 737 lncRNA 0.42 1 90697787 90698523

Neighbor

gene id symbol gene type direction distance location
LOC110506992 LOC106562470 coding upstream 232849 90441506 ~ 90442666 (+)
LOC118964965 LOC106562863 coding upstream 250849 90417861 ~ 90424832 (+)
LOC110506983 traf6 coding upstream 322167 90345783 ~ 90354922 (+)
LOC110506986 LOC106592686 coding upstream 329872 90331557 ~ 90345643 (+)
LOC118964964 LOC106562578 coding upstream 346191 90324347 ~ 90329324 (+)
LOC110527007 pex16 coding downstream 16096 90714625 ~ 90727022 (+)
LOC110506219 LOC106562554 coding downstream 60963 90759492 ~ 90780813 (+)
LOC110506998 LOC106562604 coding downstream 99491 90798020 ~ 90815693 (+)
LOC110526809 LOC106562822 coding downstream 139593 90838122 ~ 90932867 (+)
LOC118964967 NA coding downstream 203504 90902033 ~ 90903249 (+)
G558871 NA non-coding upstream 40421 90634876 ~ 90635094 (+)
G558866 NA non-coding upstream 45621 90629689 ~ 90629894 (+)
G558677 NA non-coding upstream 109250 90565466 ~ 90566265 (+)
G558666 NA non-coding upstream 138400 90536821 ~ 90537115 (+)
G558665 NA non-coding upstream 138887 90536127 ~ 90536628 (+)
G558925 NA non-coding downstream 72209 90770738 ~ 90774523 (+)
G558986 NA non-coding downstream 87347 90785876 ~ 90786173 (+)
G559010 NA non-coding downstream 172163 90870692 ~ 90871209 (+)
G559011 NA non-coding downstream 174200 90872729 ~ 90873056 (+)
G558624 LOC106562471 other upstream 227659 90446102 ~ 90447856 (+)
G558568 NA other upstream 371048 90301409 ~ 90304467 (+)
G558538 NA other upstream 415347 90259612 ~ 90260168 (+)
G559027 NA other downstream 238388 90936917 ~ 90938074 (+)
G559047 NA other downstream 292257 90990786 ~ 90992088 (+)
LOC110518689 leo1 other downstream 344102 91042534 ~ 91063779 (+)
G558900 NA non-coding upstream 11917 90684993 ~ 90685870 (+)

Expression


Co-expression Network