LOC118936345 (LOC106593119)


Basic Information

Item Value
gene id LOC118936345
gene name LOC106593119
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 90730463 ~ 90757267 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981471.1
TCGCGAACAACCCAGTATTTTTTATCCCCACTGGCACCCGTACCTCTAGAAAGGTAGCAAGATGGCTGCGGAGCCGAACAAGACAGAAATTCTGACCATTTTTAAAAGACTACGGTCTATTCCAACAAACAAGGCGTGCTTTGACTGTGCTGCCAAGAACCCCAGCTGGGCCAGTATACCATATGGAGTGTTTCTGTGCATCAACTGCTCTGGCATTCATCGCTCTCTAGGAGTGCACCTCAGCTTTATCAgATCCACTGAGCTCGACTCCAACTGGAACTGGTTTCAGCTGAGATGTATGCAGGTCGGAGGCAACGCCAACGCGACGGCCTTCTTCCGCCAGCATGGCTGCTCCACCAACGACACTACCGCCAAGTACAACAGCCGCGCGGCACAGATGTACCGAGAGAAGATCCGACAGCAAGCCAACACGGCGCTGTCCAAATATGGGTCTGACctgtgGATTGACCAATCCAGTGTGAGCAGCCAGCCTGCCGCCCCAGAGAAGAGACAGGCAGACTTCTTTACTGAGCATACTCAGCCTTCAAACAGCTGGGATGTGACGGCTCCTTCCCTGACAGAACACAATGGAACCCTCACTCCTCAACTATTGGAGGACACACCCAAAGCCCCCCACACCGCCAGCACTCAGCTGGAGGAAGGACCAAGCATTGAGGGACTGAGCACTGAGCAATCTCCCAAAGTCACTATGGAGGACTCCATGCGTTTGTCGTCAGATCAACCACAGCTACCCAAAGATGTGAAGCAATCCATCATTGGGAAAAAGAAGCCCAGCACTACTAAGAAAGGGctggGTGCTAAGAAGGGCCTGGGGGCCCAGAAGGTGAGCAGTAAGAGCTTCTCGGAGGTGGAGAAACAGGCCCAGGTAGTcgagaagcagagagaggagcaagCAGCTGATGCTAAGAAACAGGCAGAGGAGTCCATTGTGGCCTCCATGCGCCTGGCCTACAAGGAGCTGGAGATTGACAGGAAGATGGACAACAAGAAGATGCAGAACATGGAGGGTAAGAAGAGGGAGCAGGCTGAGAGACTGGGCATGGGCTTCGGCAACCGCAGCACCATATCTCACTCGGTGATGTCAGAGATGCAGGTGATTGAGCAGGAGACGCCCTTGGGGGCCAAGTCCTCGCCTCGCTCCAAACTGGACATGTTGGATGAACCGGGCTTCTCCTCCGGACCCCCTAAGTACAAGGACAACCCGTTTACGGCGGGCGACGGCTTCGGCTCGCGGTGGGACTCTGATGGGGGAGTggcctccttcacctcctcctggGCCCTGGAGAATGAGGAGCCTAAAGAGGAGGTGACAATCTCCAGCATCCAGCCTATCGGAGAACGGCCCAGTCGGCGGAAGGCGGAGGCGGCGGCGCCCGTGTCCGAGTCGAGCGAGGCCCGGCAGAAGTTTGCCAACGCCAAGGCCATCTCTTCCGACATGTTCTTTGGCCGCGAGAGCTATGCCGAGTATGAGGCCAAGACACGTCTGGAGGGCCTGTCTGGCAACACGTCCATCAGCTCTGCTGACCTGTTTGGGGACGGGAGTGACCGTGACACAGggGCAGCAGGTTATGAGAGTGTGCTGCCGACAGGGCCAGACATTGCTCAGTTCAAACAGGGGGTGAAGACTGTGGCGGGCAAGATGGCCGTGCTGGCCAATGGCGTCATGAACACCATACAGGATCGCTATGGCGCTTACTGAAGAGACCAGGATGACCAACACCCAGctgcagggggagagggagccaTGACGTCATACTgacagagagtggaggggagggggggcacaGAGCACATCACTACTGACTGGTATCTGtagtgagagaagggaagagagagtgcATGAATGGAGGGAGACCCTACACCGTGTCTGTCCATCCACCTTTTAGAGTGAGACAAAGTTTTATTTTCAGCGAAGAAAGCTCTGGAAGGtgtaaagtattttttttttctgtTCTAACTAGTCTTGTTTTCTATACTGTTTTGGTCTCTGATTTCAAACAAAATATAAACGATATAAAGTATTCTCTAAGAATGATATGATAACCAA
>XM_036981472.1
TCGCGAACAACCCAGTATTTTTTATCCCCACTGGCACCCGTACCTCTAGAAAGGTAGCAAGATGGCTGCGGAGCCGAACAAGACAGAAATTCTGACCATTTTTAAAAGACTACGGTCTATTCCAACAAACAAGGCGTGCTTTGACTGTGCTGCCAAGAACCCCAGCTGGGCCAGTATACCATATGGAGTGTTTCTGTGCATCAACTGCTCTGGCATTCATCGCTCTCTAGGAGTGCACCTCAGCTTTATCAgATCCACTGAGCTCGACTCCAACTGGAACTGGTTTCAGCTGAGATGTATGCAGGTCGGAGGCAACGCCAACGCGACGGCCTTCTTCCGCCAGCATGGCTGCTCCACCAACGACACTACCGCCAAGTACAACAGCCGCGCGGCACAGATGTACCGAGAGAAGATCCGACAGCAAGCCAACACGGCGCTGTCCAAATATGGGTCTGACctgtgGATTGACCAATCCAGTGTGAGCAGCCAGCCTGCCGCCCCAGAGAAGAGACAGGCAGACTTCTTTACTGAGCATACTCAGCCTTCAAACAGCTGGGATGTGACGGCTCCTTCCCTGACAGAACACAATGGAACCCTCACTCCTCAACTATTGGAGGACACACCCAAAGCCCCCCACACCGCCAGCACTCAGCTGGAGGAAGGACCAAGCATTGAGGGACTGAGCACTGAGCAATCTCCCAAAGTCACTATGGATGTGAAGCAATCCATCATTGGGAAAAAGAAGCCCAGCACTACTAAGAAAGGGctggGTGCTAAGAAGGGCCTGGGGGCCCAGAAGGTGAGCAGTAAGAGCTTCTCGGAGGTGGAGAAACAGGCCCAGGTAGTcgagaagcagagagaggagcaagCAGCTGATGCTAAGAAACAGGCAGAGGAGTCCATTGTGGCCTCCATGCGCCTGGCCTACAAGGAGCTGGAGATTGACAGGAAGATGGACAACAAGAAGATGCAGAACATGGAGGGTAAGAAGAGGGAGCAGGCTGAGAGACTGGGCATGGGCTTCGGCAACCGCAGCACCATATCTCACTCGGTGATGTCAGAGATGCAGGTGATTGAGCAGGAGACGCCCTTGGGGGCCAAGTCCTCGCCTCGCTCCAAACTGGACATGTTGGATGAACCGGGCTTCTCCTCCGGACCCCCTAAGTACAAGGACAACCCGTTTACGGCGGGCGACGGCTTCGGCTCGCGGTGGGACTCTGATGGGGGAGTggcctccttcacctcctcctggGCCCTGGAGAATGAGGAGCCTAAAGAGGAGGTGACAATCTCCAGCATCCAGCCTATCGGAGAACGGCCCAGTCGGCGGAAGGCGGAGGCGGCGGCGCCCGTGTCCGAGTCGAGCGAGGCCCGGCAGAAGTTTGCCAACGCCAAGGCCATCTCTTCCGACATGTTCTTTGGCCGCGAGAGCTATGCCGAGTATGAGGCCAAGACACGTCTGGAGGGCCTGTCTGGCAACACGTCCATCAGCTCTGCTGACCTGTTTGGGGACGGGAGTGACCGTGACACAGggGCAGCAGGTTATGAGAGTGTGCTGCCGACAGGGCCAGACATTGCTCAGTTCAAACAGGGGGTGAAGACTGTGGCGGGCAAGATGGCCGTGCTGGCCAATGGCGTCATGAACACCATACAGGATCGCTATGGCGCTTACTGAAGAGACCAGGATGACCAACACCCAGctgcagggggagagggagccaTGACGTCATACTgacagagagtggaggggagggggggcacaGAGCACATCACTACTGACTGGTATCTGtagtgagagaagggaagagagagtgcATGAATGGAGGGAGACCCTACACCGTGTCTGTCCATCCACCTTTTAGAGTGAGACAAAGTTTTATTTTCAGCGAAGAAAGCTCTGGAAGGtgtaaagtattttttttttctgtTCTAACTAGTCTTGTTTTCTATACTGTTTTGGTCTCTGATTTCAAACAAAATATAAACGATATAAAGTATTCTCTAAGAATGATATGATAACCAA

Function

NR:

description
ADP-ribosylation factor GTPase-activating protein 2 isoform X5

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12493 ARFGAP2_3; ADP-ribosylation factor GTPase-activating protein 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981471.1 False 2068 mRNA 0.54 16 90730463 90757267
XM_036981472.1 True 2023 mRNA 0.54 15 90730463 90757267

Neighbor

gene id symbol gene type direction distance location
LOC110526806 s22ai coding downstream 23082 90700073 ~ 90707381 (-)
LOC118964966 LOC100136416 coding downstream 70352 90644590 ~ 90660111 (-)
LOC110527011 LOC106587771 coding downstream 107741 90594192 ~ 90622722 (-)
LOC118936665 kcnq1 coding downstream 235372 90445884 ~ 90495091 (-)
trpm5 trpm5 coding downstream 327078 90360429 ~ 90403385 (-)
LOC110527014 NA coding upstream 185525 90942792 ~ 90951122 (-)
LOC118965055 NA coding upstream 230255 90987522 ~ 90989174 (-)
LOC118964969 NA coding upstream 266442 91022853 ~ 91026417 (-)
LOC118965056 NA coding upstream 306583 91063850 ~ 91068906 (-)
LOC110511526 LOC106592072 coding upstream 492925 91248205 ~ 91286961 (-)
G558959 NA non-coding downstream 6859 90720152 ~ 90723604 (-)
G558953 NA non-coding downstream 27345 90702163 ~ 90703118 (-)
G558940 NA non-coding downstream 56846 90673124 ~ 90673617 (-)
G558938 NA non-coding downstream 60226 90669911 ~ 90670237 (-)
G558932 NA non-coding downstream 93327 90636418 ~ 90637136 (-)
G558979 NA non-coding upstream 21803 90779070 ~ 90780103 (-)
G558980 NA non-coding upstream 23185 90780452 ~ 90781092 (-)
G558989 NA non-coding upstream 32144 90789411 ~ 90790026 (-)
G559081 NA non-coding upstream 43348 90800615 ~ 90802750 (-)
G559094 NA non-coding upstream 80966 90838233 ~ 90839194 (-)
G558339 LOC106587697 other downstream 748839 89974182 ~ 89981624 (-)
G558246 LOC106562569 other downstream 862406 89865968 ~ 89868057 (-)
G558124 NA other downstream 1009309 89720475 ~ 89722021 (-)
G558051 NA other downstream 1108708 89621348 ~ 89621755 (-)
G557663 NA other downstream 1570578 89159224 ~ 89159885 (-)
G559123 NA other upstream 165831 90923098 ~ 90923835 (-)
G559162 NA other upstream 233563 90990830 ~ 90992177 (-)
G559163 NA other upstream 235169 90992436 ~ 90992949 (-)
G559364 NA other upstream 531825 91289092 ~ 91290337 (-)

Expression


Co-expression Network