LOC110506219 (LOC106562554)


Basic Information

Item Value
gene id LOC110506219
gene name LOC106562554
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 90759492 ~ 90780813 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981797.1
acagacagacagataggctaAGAGAAAGACATAATGGACCTTGGTATGCTGCTCCTGCTGGTACTCAGCAGTGCCGTCTGCCACAGCGCGGATTCAACGTATTATGGTGGGACTGTGCGCTGTACAGTACCGGGATACATGCCCCCAGACTCGAAATGGACAGGGGAGGTACAATTCCACTACCGTGAGAATGGCCGGGACAGGTGTGAACAGCAGTTCTCCTGGGAGTGCACCAGCGGCTACTGTAATGGCAGTGCCAACCGACAAGGACCTGTCGTGCAGACCACCGACAAGGACCAGTCCGGCCAAAACCTCTGGTGCCAGTCGGAGGGACACTTCACTAGAAACTTCACTAGGGACCAGAAAACCCAATCCTACACCCTGAGTGACTCAGGTTGCTGTTGGGGCTCCAATGTCAATGGAAAGACCAACTGGACAATACACACCGAGGTGGATTTGGGGTTACGGGTCAGCCCGGGGCCtccaacccaaaacacacctcctgtCACGGCAACTGTCCCAACCCTGCGAGTTCCTCAGAACTGCttttccactcttcctctcttggCCTATGACCCGGATGGAGATGACGTGAGGTGCCACTTCCCTGTGAACGTCGCACACCCCAACATTACACTTGACAGGGTCCAGTGCACTCTGCATGCCACGGGCCGGTTGGCTGTAGGGTTGCATGTATTTGAGGTGCTGCTGCAGGACCACCCCACTGTAGACGTCAACATGACAGGATATAAATCTAATTATACCAGAAAGGCCCTGAACGAGTCCTATGCCAGTAACCCGACTCCGACCCCGTTCAGCCGCGTGCCCTTGCAGTTTGCCGTGGAGATCCAGCCAGCTCTATCCAACTGTCTCCCTGGCTACATACGACCACAGTTCTTGACTCCAACACCTTCACATGGGGATGTCCATCATGCCGCTGTGGGTCACCTGTACCAACTCGAAGCCCGAGTAAAAACCGCCCATGCCAAGACATTTGACTTCCAGGTCAGCGGCCCTTCCAACATGACCAAGAAGATCAGGGATGAGGGCTTTGGTGTCACGAGGCTCTTCCTGGGCTGGATCCCGCAGGAAAGACACCTGAGACAAAACATTCCCATCTGTTTCACTGCCGAGACAAACGAGAGCCAGTCAGAGATGAgatgtgtggttgtggtggtggccAAAGCCCTCGCACTTACAGGTGAGGCGAATGTTTCGTGCACAGAGAATAGGATCAGCATCGCCGTGAGCAAGGCCTATCTGCCTGGGGTGGACATGAAGTGGCTGCGGCTAGCCGACTCATCCTGCTCCCTAACCTCCAACCAAACACACATCATGGGCACCATGTCACTCAAAACCTGTGGCACAAAGATGGAGGATGCAGGTGACTTCATGGTGTTGAAAAACGAAATAAACTCCTTCGACGCGGTCAACGCGACCATCACGCGACGTAACCGGATCCACATCGGCTTCTCCTGCCGGTATCCCAAGACCGTCAGCATTTCCAACTATTACCAGATCCACAGCTCCAACTACATGTTCACAGAGTCCAACTTTGGTAGCTTTGGCTACACCTTTGAGGTCTTCAAGGACAGTAAGTTCACCCAGAAGGTGGATCCCAGTGCTTACCCAGTGAAGGTGAAGCTAATGGACAGGCTGTACATGGGCATCCAGGCCCAGTCCGATCTGCCCAAGGTACAGCTGTTGGTGGAGTCTTGCAAAGCCACTCCGGATGACAGCGCCAGCAGCAGTCTCTTCTACGACCTCATCAAAGACGGGTGTCTAAAGGACGAGACGGTCAAGGTTTATCCCGGGAACCGAACCCAATTCTACTTTGAGGTCCAGGCCTTCAAATTCACTGGGAGCTACGACCAGGTGTTCCTCACCTGTACCGTCATCCTGTGTGAGGTAGGAAACCCCAACTCTAGGTGTGACCAGGGCTGCCTGAACAAAGCCTCGCGGAGGCGCAGGCGAGATCTCCCcaacggagagacagacaggcactaCATTACCCAGGGTCCTTTCCGTGTGGTCAGAGAGACCCAGCCCAGTGCAGACCAGAAGACAGGTGCAGGTGAAAAGACCGGTGCAGATGTGGAAGCTACATATTTTCTCAGATCGGACATGGGAACCATAGTCTTCGCCGGGCTGTTCATCATGACCGTGATTCTGCTGACAGTGGTCGTGGTCTATTTTTTGAAGAAGAGCAGAGCTGAAGAACACGAGGCTCTCATTGCATATGATTAGAGAAATGTAACTGGGTTTGTGCCTGACCAGGGTCACTTCTGGTTTACCAAAAGTAAAGCACACCTTTCTTTTAGTTGTACTTTCAACAACAAATGAACACTAGTTTACATACTGAATACGGTAACATTAACTACACATATTAACACTAGTTTACATACTGAATACGGTAACATCAACTACACAAATTAACACTAGTTTACATACTGAATACGTTAACATTACTACACAAATTAACACTAGTTTACATACTGAATACGGTAACATTAACTACACATATTAACACTAGTTTACATACTGAATACGGTAACATTAACTACACAAATTAACACTAGTTTACATACTGAATACGGTAACATTAACTACACAAATTAACACTAGTTTACATACTGAATACATTAACATTAACTACACAAATTAACACTAGTTTACATACTGAATACAATAACATTAACTACACAAATGTAGTTGGTTCATTCTTATTCACTTTTCTGTGATACAGACATTTGGATCAACTGTTTGATACTCCTGACTCaagaaagtggaagaaattgGTTGTTGTTGAGAATCCTGTTATGCAAATAAGTCTgtattgattaaatacattttaggcaaaaataCTATTTTATACTGTTCTCTGCCTCACCACTCATTCAAACATGATTTATTGCTTTAAAGGGGCAGTAATTTTATGACTAATAAATGTATGATATTTATTGATTCTTGAATATTTATAAATTCCTCATGAATTTAGTTCAAGTGTTGtacccccatcagaacccaataTATATATGCTTGTTTTACTTCAATGTTTGTTAAGCGTCAATCTGTATTTTTGTCCAAATTGAGTTATTGACATTTAGCCTcgttctgttcaatgttctcaacctatatatatatattactctaaataccccaattcatgttaagttcaaaagaatacaagATTAAAATAGCTGACACCATTCAAATCAACGAGGAAAATgtaaagccaattatctcagcATCATCTTTATGCAGACAGAACCTTTTGGTCCCAAACtctaaatgtgtttgtttatgtcATGACCTCTACTACCTACCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCCTACTACCTACCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCCATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGGCCTCCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCCATTGGTTTGTTTATGTCATGACCTCCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCCATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCTACTACCTGTCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCTAATGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCTATTGGTTTGTTTATGTCATGACCTCTACTACCTGCCACTCTCTCCATTGGTTTGTTTCTGAGTCTGCTAAAGTGGTGTGAAGTAAAAAATACTGTAAAGTA

Function

NR:

description
PREDICTED: uncharacterized protein LOC105025328

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981797.1 True 4883 mRNA 0.45 13 90759492 90780813

Neighbor

gene id symbol gene type direction distance location
LOC110527007 pex16 coding upstream 32470 90714625 ~ 90727022 (+)
LOC110526798 cars coding upstream 60963 90675515 ~ 90698529 (+)
LOC110506992 LOC106562470 coding upstream 316826 90441506 ~ 90442666 (+)
LOC118964965 LOC106562863 coding upstream 334826 90417861 ~ 90424832 (+)
LOC110506983 traf6 coding upstream 406144 90345783 ~ 90354922 (+)
LOC110506998 LOC106562604 coding downstream 17207 90798020 ~ 90815693 (+)
LOC110526809 LOC106562822 coding downstream 57309 90838122 ~ 90932867 (+)
LOC118964967 NA coding downstream 121220 90902033 ~ 90903249 (+)
LOC118964968 tmod3 coding downstream 199911 90980724 ~ 91023428 (+)
LOC110518689 leo1 coding downstream 261721 91042534 ~ 91063779 (+)
G558900 NA non-coding upstream 73622 90684993 ~ 90685870 (+)
G558871 NA non-coding upstream 124398 90634876 ~ 90635094 (+)
G558866 NA non-coding upstream 129598 90629689 ~ 90629894 (+)
G558986 NA non-coding downstream 5063 90785876 ~ 90786173 (+)
G559010 NA non-coding downstream 89879 90870692 ~ 90871209 (+)
G559011 NA non-coding downstream 91916 90872729 ~ 90873056 (+)
G559013 NA non-coding downstream 100639 90881452 ~ 90883328 (+)
G559020 NA non-coding downstream 117888 90898701 ~ 90899194 (+)
G558624 LOC106562471 other upstream 311636 90446102 ~ 90447856 (+)
LOC118964964 LOC106562578 other upstream 433232 90324347 ~ 90329324 (+)
G558568 NA other upstream 455025 90301409 ~ 90304467 (+)
G559027 NA other downstream 156104 90936917 ~ 90938074 (+)
G559047 NA other downstream 209973 90990786 ~ 90992088 (+)
LOC110511547 pde8a other downstream 709704 91490509 ~ 91699286 (+)

Expression


Co-expression Network