LOC110506998 (LOC106562604)


Basic Information

Item Value
gene id LOC110506998
gene name LOC106562604
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 90798020 ~ 90815693 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981798.1
GGTATTGAAGGTTGGATGCTGGAGGCAGATAGGTAGAGAGGAATCCTCCAGAGAGATCCAGGCATCATGTCCTCCTCCACACCGGTGTTGCTGCATCTGCTGCTACTGGTCTCCCTGGCTTCAGCGGGACACTTCTATGGAGGCTCCATGTCTGTCACCCCCAAAGGGAGGAACGCTGACGGAACATTCAAGGTGGATTTACGCTACAAGAATACCCATGACTGGTGTGATTACGATGGCTGGTATTGTTCTTCAGGGAACTGCGGCTCTTCTGTCAAAGATGTCAGAGGCACAAttgacagcagcagcagaggacGGAGTGGTTACAACAACCAGTGGTGTGAAACTGAAACAGTCGAGACCAGAAATATCCCCAGTGATAAACCTTTTCAATTGATACAAAACAGCTGCTGTTGGATCCCAACAGTAAACGGTCTTGGACCTTGGAGCCTGGAAACACAAGTGGATCTGGGAACAAGATCTGATACTGGTGAACCCAACAGATCTCCAGTCACAGCCATTCTTCCTTTCATACGTGTTCCCCAGAACTGTCAGAGGTCCTACAACCTCATGGCCTTTGACCCTGACGGTGATCGTGTCAGATGCAGATACGGATTGGTCAGACCTGAGTGCGATAGCTGTGATCAGCCTTCAGGTTTCTACCTGGATCAGGGCTCTTGCTCCTTACAATACGGCTACACTTCAACGAGTGGCGTCTACGGGTTTGAGCTAGTTGTAGAAGACTTTCCTAACCAACACATCACCCTGTCCTACACCGATGGCTCTAGTTCCTCCAGGGCACCGCTTCATGCAGGGAGACGCCGACGCTCCAGCTACCAAACAACCGTCTCCTATCGCTGGTGGTGGAGCCAAACCACCACAACTCCTTCTCCTTGGTGGTGGAGCCAAACCACCACAACCGCCCCCTGGCCCACCACCAACCCCGCCCCCCggcccaccaccactacccccccCTGTGACATTACCAGCgccgccaccaccaccaggcccaCTACCAccgccgccaccaccaccaccaggcccaCTACCACCGCCACTATCACCAGGCCCACTTCCACCATCCCCTCCTGTGACATTACCAGCGccgtcaccaccaccgcccccgACACCACCACCAGGCCCACTACCACCGCCCCCGACACCACCACCAGGCCCACTACCACCGCCCCCGACACCACCACCAGGCCCACTACCACCGCCCCCGACACCACCACCAGGCCCACTACCACCGCCCCCGACACCACCACCAGGCCCACTACCACCGCCcccgccaccaccaccaggcccactgcccccgccaccaccaccaggcccaCTACCACCGCCcccgccaccaccaccaggcccaCTACCACCGCCcccgccaccaccaccaggcccaCTACCACCGCCcccgccaccaccaccaggcccaCTACCACCGCCcccgccaccaccaccaggcccaCTACCACCGCCcccgccaccaccaccaggcccaCTACCACCGCCcccgccaccaccaccaggcccaCTACCACCGCCcccgccaccaccaccaggcccaCTACCACCGCCCCCGCCACCACCACTAGGCCCACTACCACCGCCgccgccaccaccaccaggcccaCTACCAccgccgccaccaccaccaccaggcccaCTACCACCGCCcccgccaccaccaccaggcccaCTACCACCGCCGCCACCACCACCCCCAGGCCCACTACCACCGCCcccgccaccaccaccaggcccactaccaccgccaccaccaccaggcccaCTACCAccgccgccaccaccaccaccaggcccaCTACCAGTGCACCGGTTCATGCAGGGAGACGCCGACGCTCCAGCTACCAAACAACCGTCTCCtatcccactaccaccaccaccaccaggcccactaccaccaccccctGGCCCACTACAACCCCCCCCTggcccactaccaccaccaccactaccaccaccaccccaggaAGCCTGTATCCCTCCACTGCTCCCCTCAGCAAACTCCCTCTGCATTTCTCTCTTCTGGTGGACTCTAGTGTTCCGTCCTGCGATGAGGGTATGTACCTGCCCAGGTTCGTGCAGCCGACACCACACAACGGAGAACATCTCCACGCCGAGGTCAACAAAGAGCTGGAGTTCAGGGTCAAGGCCGAGGCTACACACTCAACGATTAATGATGTCATCGTCAGTGGACCTCTGAACATCACCAATCACATGACTACCCAGGGGGAGTTTGTCATCCGGTGGACACCCATCCGGGACAATCTGGGGGAGTATTTCCCCATTTGCTTCATCACTGAGGGGATTTCTGGATCTAGTGTCTATCAGTCTGAGATGAGATGTGTTGTGGTGGAGGTCGGACGCAAAAAGGTCAAAGCCAAGGTGGTGTGTGACGAGACCAAGATGACGGTAGAAGTGGAGAAGTCCTCTGTTACTGAAATTCACGAGGACCACCTCCGCCTCAACGATCCCAGTAACTCTGCCTGCGACCTGCAACGCCTCTCTAACAGCACCCACATCATTGGAGTCATCCCCCTCAATGCCTGTGGCACTCAGATAGAGGAGGACGACGACAACCTCATCTTCAAGAACCAAATCACCACCTTCGACAACCCCAACGACATCATCACCAGGCACCACCAGGTGGAGTTCCAGTTCTACTGCCAGTACGCCAAACGTGGCAACGTGTCCCTGGGCTTCACTGCACACAGGGACAGCATCACGGTGGTGGAGAAAGGCTTCGGCACGTTCACCTACCAGTTTGAGTTCTACCAGACCAGCCAGTTCGCCAACATGGTGGATCCCCGTGACTACCCGTTAGACGTGGAGGTGAAGCAGATGATCTACATGGACATCGAGGCCGTGTCCACTGTGAACAACACTGAGCTCTTCGTGGAGTCCTGCAGAGCGGCGCCGTACGACAACCCCGACTACCATCCCACCTACCCCATCATAGAAAACGGgtgCATTGTGGACGAGACGGTTCAAATCTTCTCACCGCGTCACCAGAGACATTTCCAGTTCGGAATGGAGGCTTTCAAATTCATCGGAATGCATGACCAGGTGTACATCAGCTGTTCAGTGATCCTGTGTGAGGCTGGGAACCCCAACACCCGGTGTGCCCAGGGCTGCGTCAACTCCACCTCCCCCCAGCCTGCtggtcaccaccaccaccgcaaGAGAGAGGCCGCCATGCAAACGGCCAAACACCACATCTCCCAGGGTCCTTTGCGCCTGAGAAAGAGTTCAGAGAGCTCAGTGACCAACGTGAACATGGGGTTGATGGTTGGGTGTATCGTAGCAGCCGTTGCCGTGCTGTGCGGAGTGATGCTCTACAAGTCCAAAACATCAGGCGTTAAATACCAGCCCCTGACAACATTTGAGACTTAGTCCCATGGCAACCATCCTTTCACGTAGAGTCTGCATTATAGAAAGAAGGATGGTGGGAAATATTGAACATTTGAAAAGTGGTCTCTTTGACTTTAACGATGAAATGTCTCTTGAGATCAATACAAGAATATGCATTAATCCGTAAACGTACTTAGCGGTGACTCCGATTATAACAATGTGTCTTGGCTGACCAGGTTAAAAGTTCTGAATAGCCACTCGAGCACCAGTAGGATTGCAGGTGTTCATACATCACaggaagctgctgaggggagcACAGCTTATAATGTCCGGAATGGAGAGAATTGAGTGAATGGTATTTGATTCCACTCTACTCGtttcactccagccattaccatggtCCCGTgatccccaattaaggtgccaccaacctcctgtgatgtgtatatatatatatatatatatttactgtagCCTGTCCTAAACACATTTGACCCATATAGTGCCCTCTAGTGTACAAATGAAATGTAATTTACAAATACAGAACAGCTATAATCCACACAACATCCGTAGAGGTTTGGCCCAAATGTCTCCTACAACTTGTTTGACCAGTTTAACTCCTGCTTCTTCttactgtctgtattgtgatGTGGGGAAAGTCATGTGATACTGGGATGTGCTCTGAAATATTTGACCGTTGTCACGTTCTGGAAAGCTTTCTATATTGGCCAGGGTCTGTTGAACCAGGGATCAATTACATTTATTTGTTGTGATTGTGTTACATCAAAATGGAACCCtggttaaaataaatgtttagtcTATATGATGTAATGAATTACTGTAAAATTGCCCTTTCAAATAAATGAATGTATTGGTATTAA

Function

NR:

description
CUB and zona pellucida-like domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981798.1 True 4256 mRNA 0.55 14 90798020 90815693

Neighbor

gene id symbol gene type direction distance location
LOC110506219 LOC106562554 coding upstream 17207 90759492 ~ 90780813 (+)
LOC110527007 pex16 coding upstream 70998 90714625 ~ 90727022 (+)
LOC110526798 cars coding upstream 99491 90675515 ~ 90698529 (+)
LOC110506992 LOC106562470 coding upstream 355354 90441506 ~ 90442666 (+)
LOC118964965 LOC106562863 coding upstream 373354 90417861 ~ 90424832 (+)
LOC110526809 LOC106562822 coding downstream 22429 90838122 ~ 90932867 (+)
LOC118964967 NA coding downstream 86340 90902033 ~ 90903249 (+)
LOC118964968 tmod3 coding downstream 165031 90980724 ~ 91023428 (+)
LOC110518689 leo1 coding downstream 226841 91042534 ~ 91063779 (+)
LOC110526812 LOC106587736 coding downstream 354476 91170169 ~ 91196357 (+)
G558986 NA non-coding upstream 11847 90785876 ~ 90786173 (+)
G558925 NA non-coding upstream 23497 90770738 ~ 90774523 (+)
G558900 NA non-coding upstream 112150 90684993 ~ 90685870 (+)
G559010 NA non-coding downstream 54999 90870692 ~ 90871209 (+)
G559011 NA non-coding downstream 57036 90872729 ~ 90873056 (+)
G559013 NA non-coding downstream 65759 90881452 ~ 90883328 (+)
G559020 NA non-coding downstream 83008 90898701 ~ 90899194 (+)
G559022 NA non-coding downstream 95271 90910964 ~ 90911396 (+)
G558624 LOC106562471 other upstream 350164 90446102 ~ 90447856 (+)
LOC118964964 LOC106562578 other upstream 471760 90324347 ~ 90329324 (+)
G558568 NA other upstream 493553 90301409 ~ 90304467 (+)
G559027 NA other downstream 121224 90936917 ~ 90938074 (+)
G559047 NA other downstream 175093 90990786 ~ 90992088 (+)
LOC110511547 pde8a other downstream 674824 91490509 ~ 91699286 (+)

Expression


Co-expression Network