LOC110527014


Basic Information

Item Value
gene id LOC110527014
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 90942792 ~ 90951122 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981501.1
ataggtgtctgtgtactgtctctctgtATTGTTATAATAGGTGTCTGTGTACTGTCTCGATGTGTTGTTATAGGACTATAAtacatgtcagttaagaacaaattcttatttacaatgacgactcTCTGATGCTGAGAGTTTCTCTCTTTTGGTTTTCTGTTCCCTCCAGTTGTATGTCAGTAACATCAATGAAGAGTGACCATTCAATGGATTCCCCTCGTtatttcaaagagagagaaaaggtctcTCAGCCAAAAGCAGAACCAGGAGAACCATGTGACATCTGCTCTGAACGCAAAGCCATGAAGCTTTGTCTGACCTGCTCTGTCTACTACTGTGAGAAACACATTAGGAAGCACTTCATAATACAAGCACTGAGGAGACACGTCATGGTGGATGTCACTGAAGAAGTCGTACTACAGAGAAACACCtcggagaagaagaggagagaggagcaggaggaagagggaaggagacagggacaggaggaggggcTGAGGTGGCAGACGAGGAAGGAGGACtttagggaagaggagagggggcacCAGGAGGCTGGGGAACAACagtgcagagagaaggagaggaagagagagcgagagaaggagagggagaaagagagggagaagcagcAGCAATCGATAGGGGACTCCTATGGCTATACTGGCCAGGTCCAGCCTGAGACATCCAGGTTAGACAGGGCAAAGTCCAAATCCATTCCTGAGCTGGACCATGTGGAGAAACCAGAGATCAACGTGACTAGCAGTGATGGGCTGGGTGAGGCATCATGGATAAAGGGCCAGCAGAACCTGCCCAAGGCGCAGCTGGAGAGGCAGCAGAACCTGCCCAAGGTGCAGCTGGAGAGGCAGCAGATCCTGCCCAAGGCGCAGCTGGAGAGGCAGCAGATCCTGCCCAAGGCGCAGCTGGAGAGGCAGCAGATCCTGCCCAAGGCGCAGCTGGAGAGGCAGCAGATCCTGCCCAAGGCGCAGCTGGAGAGGCAGCAGAACCTGCAGGTGAAAAAGAGAGTCAGACTACGCAACGACGACAGCTGGATCCGCCAGTGTTCCACCAGCAAGCCTCCTGCCGCCGGACTCATCAGGAAAGGCAAGTCTCTCGACAACCTGGACATCTGCTCTTCCTGGCACTCGTCGTGGACACCGGAGAGCACCTCCTCCATCCTCAACTACAGTTGGCCTCACTCTGCCCTCAACAGCTACATCGGCCGGGTCGGAGGTCATTCCGGCTCAGCcactatgtcctctctctccatgaGCTCCCTCAGAGGAGCCGGGTTTGGAAGCCCCAAGTCCCAGTCATTCCTATCCGTGCATGAAAGCAGCAGGACAGTGAGTAGCAAGGAAATGTGTACGTTGTGTGGCACGGCGCTGGTCAAGGGAGCCGCCATGGTCATCGAGTCCCTGGGGCTCGTTTATCATTTGATGTGTTTCAAGTGCATCAACTGTAAGTCCGAGCTGCTGGGCGCATCGGAGGTCGGAGCGGAGGTCAGAATACGGAACCGACGCCTCTTCTGTGACTCCTGCTACGTGACTGAAAAGTGGACAGTCAACCTCCGTGAGAAACGAGTCAAAAGATTTTCAGAAGTAAAGCAAGATACACCAGCAGTGTTGTTTCCAAAGGGAGCAAATGAAACACAGTGGGCAGAACAAGGAGTTTCAAGTgaagttttattgtcacatgcacaggatcaAGCAGGTCTAACACAGTACAGTGAAACGTTAACTTGTGAACTCTTTCCCAACGATGCACAAGGAAGCCAGtgagaaagaaataaaaacaggaCATGAGAGAAGAAACATGAGGATGCTGttatatacaggtctgatatacaggtctggtatacaggtctgatatacaggtctgatatacaggtctaatatacaggtctaatatacaggtctaatatacaggtctaatatacaggtctgatatacaggtctgatatacaggtctaatATACAGGTCTAATATACAGGTCTAATAtgcaggtctgatatacaggtctgatatacaggtctggtatacaggtctg
>XM_036981502.1
CAGAAAACATTCATAGTGAAAGTTAGAAAAGAACAAGCCACGGAAAGCAAGAGCAAGTGACACAATTCTGTCGGGTAAAATTAGGAGGCTTCTCTCAGTTGTATGTCAGTAACATCAATGAAGAGTGACCATTCAATGGATTCCCCTCGTtatttcaaagagagagaaaaggtctcTCAGCCAAAAGCAGAACCAGGAGAACCATGTGACATCTGCTCTGAACGCAAAGCCATGAAGCTTTGTCTGACCTGCTCTGTCTACTACTGTGAGAAACACATTAGGAAGCACTTCATAATACAAGCACTGAGGAGACACGTCATGGTGGATGTCACTGAAGAAGTCGTACTACAGAGAAACACCtcggagaagaagaggagagaggagcaggaggaagagggaaggagacagggacaggaggaggggcTGAGGTGGCAGACGAGGAAGGAGGACtttagggaagaggagagggggcacCAGGAGGCTGGGGAACAACagtgcagagagaaggagaggaagagagagcgagagaaggagagggagaaagagagggagaagcagcAGCAATCGATAGGGGACTCCTATGGCTATACTGGCCAGGTCCAGCCTGAGACATCCAGGTTAGACAGGGCAAAGTCCAAATCCATTCCTGAGCTGGACCATGTGGAGAAACCAGAGATCAACGTGACTAGCAGTGATGGGCTGGGTGAGGCATCATGGATAAAGGGCCAGCAGAACCTGCCCAAGGCGCAGCTGGAGAGGCAGCAGAACCTGCCCAAGGTGCAGCTGGAGAGGCAGCAGATCCTGCCCAAGGCGCAGCTGGAGAGGCAGCAGATCCTGCCCAAGGCGCAGCTGGAGAGGCAGCAGATCCTGCCCAAGGCGCAGCTGGAGAGGCAGCAGATCCTGCCCAAGGCGCAGCTGGAGAGGCAGCAGAACCTGCAGGTGAAAAAGAGAGTCAGACTACGCAACGACGACAGCTGGATCCGCCAGTGTTCCACCAGCAAGCCTCCTGCCGCCGGACTCATCAGGAAAGGCAAGTCTCTCGACAACCTGGACATCTGCTCTTCCTGGCACTCGTCGTGGACACCGGAGAGCACCTCCTCCATCCTCAACTACAGTTGGCCTCACTCTGCCCTCAACAGCTACATCGGCCGGGTCGGAGGTCATTCCGGCTCAGCcactatgtcctctctctccatgaGCTCCCTCAGAGGAGCCGGGTTTGGAAGCCCCAAGTCCCAGTCATTCCTATCCGTGCATGAAAGCAGCAGGACAGTGAGTAGCAAGGAAATGTGTACGTTGTGTGGCACGGCGCTGGTCAAGGGAGCCGCCATGGTCATCGAGTCCCTGGGGCTCGTTTATCATTTGATGTGTTTCAAGTGCATCAACTGTAAGTCCGAGCTGCTGGGCGCATCGGAGGTCGGAGCGGAGGTCAGAATACGGAACCGACGCCTCTTCTGTGACTCCTGCTACGTGACTGAAAAGTGGACAGTCAACCTCCGTGAGAAACGAGTCAAAAGATTTTCAGAAGTAAAGCAAGATACACCAGCAGTGTTGTTTCCAAAGGGAGCAAATGAAACACAGTGGGCAGAACAAGGAGTTTCAAGTgaagttttattgtcacatgcacaggatcaAGCAGGTCTAACACAGTACAGTGAAACGTTAACTTGTGAACTCTTTCCCAACGATGCACAAGGAAGCCAGtgagaaagaaataaaaacaggaCATGAGAGAAGAAACATGAGGATGCTGttatatacaggtctgatatacaggtctggtatacaggtctgatatacaggtctgatatacaggtctaatatacaggtctaatatacaggtctaatatacaggtctaatatacaggtctgatatacaggtctgatatacaggtctaatATACAGGTCTAATATACAGGTCTAATAtgcaggtctgatatacaggtctgatatacaggtctggtatacaggtctg
>TU634040
ctctgtgttgttataataggtgtctgtgtactgtctctctgtgttgttataataggtgtctgtgtactgtctctctgtgttgttatagGACTATAATAGgtgtctgtgtactgtctctctgtATTGTTATAATAGGTGTCTGTGTACTGTCTCGATGTGTTGTTATAGGACTATAAtacatgtcagttaagaacaaattcttatttacaatgacgactcTCTGATGCTGAGAGTTTCTCTCTTTTGGTTTTCTGTTCCCTCCAGTTGTATGTCAGTAACATCAATGAAGAGTGACCATTCAATGGATTCCCCTCGTtatttcaaagagagagaaaaggtctcTCAGCCAAAAGCAGAGTAAGACCCTCTATTCTACCTTCTAAAACAGAGAAACTACaaggatgctactgctttacctcattataataacatattaaaggatgctactgctttacctcattataataaaatattaaaggatgctactgctttacctcattataataaaatattaaaggatgctactgctttaccAGCGTATAATAAAATACtaaaggatgctactgctttaccAGCGTATAATAAAATACtaaaggatgctactgctttacctcattataataaaatattaaaggatgctactgctttaccAGCGTATAATAAAATACtaaaggatgctactgctttaccAGCGTATAATAAAATACtaaaggatgctactgctttacctcattataataaaatattaaaggatgctac

Function

NR:

description
PREDICTED: rho guanine nucleotide exchange factor 3, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981501.1 False 2047 mRNA 0.50 2 90942792 90947428
XM_036981502.1 False 1976 mRNA 0.51 3 90942792 90951122
TU634040 True 759 lncRNA 0.34 4 90945868 90948017

Neighbor

gene id symbol gene type direction distance location
LOC118936345 LOC106593119 coding downstream 185525 90730463 ~ 90757267 (-)
LOC110526806 s22ai coding downstream 235411 90700073 ~ 90707381 (-)
LOC118964966 LOC100136416 coding downstream 282681 90644590 ~ 90660111 (-)
LOC110527011 LOC106587771 coding downstream 320070 90594192 ~ 90622722 (-)
LOC118936665 kcnq1 coding downstream 447701 90445884 ~ 90495091 (-)
LOC118965055 NA coding upstream 36400 90987522 ~ 90989174 (-)
LOC118964969 NA coding upstream 72587 91022853 ~ 91026417 (-)
LOC118965056 NA coding upstream 112728 91063850 ~ 91068906 (-)
LOC110511526 LOC106592072 coding upstream 299070 91248205 ~ 91286961 (-)
LOC118964970 LOC106593544 coding upstream 392076 91343198 ~ 91356880 (-)
G559143 NA non-coding downstream 105 90941544 ~ 90942687 (-)
G559129 NA non-coding downstream 3356 90937468 ~ 90939436 (-)
G559126 NA non-coding downstream 14518 90927655 ~ 90928274 (-)
G559125 NA non-coding downstream 15390 90926726 ~ 90927402 (-)
G559123 NA non-coding downstream 18957 90923098 ~ 90923835 (-)
G559158 NA non-coding upstream 31966 90983088 ~ 90983525 (-)
G559165 tmod3 non-coding upstream 45921 90997043 ~ 91013689 (-)
G559130 NA non-coding upstream 75437 91026559 ~ 91084304 (-)
G559139 NA non-coding upstream 78085 91029207 ~ 91029549 (-)
G558339 LOC106587697 other downstream 961168 89974182 ~ 89981624 (-)
G558246 LOC106562569 other downstream 1074735 89865968 ~ 89868057 (-)
G558124 NA other downstream 1221638 89720475 ~ 89722021 (-)
G558051 NA other downstream 1321037 89621348 ~ 89621755 (-)
G559162 NA other upstream 39708 90990830 ~ 90992177 (-)
G559163 NA other upstream 41314 90992436 ~ 90992949 (-)
G559364 NA other upstream 337970 91289092 ~ 91290337 (-)
LOC110519163 LOC106593544 other upstream 419823 91370934 ~ 91381714 (-)

Expression


Co-expression Network