LOC118964969


Basic Information

Item Value
gene id LOC118964969
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 91022853 ~ 91026417 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052285.1
tggttaccaacgtaattagagcagtaacaattaaatgttttgtcatacctgtggtatacggtctgatgtagcacggctgtcagccaatcagcattcagggcttgaaccacccagtttgtaaTTCTCTATAAATGGTGAGTGTCAACATCAGGCTGTATTTTGTCTGTTTTACAGCAGGCTAGTGTTCTCCGGAGAATCCAGCTGAGTTTAACACAGCATGTTGGTTTTCTTCCATAGTGAGTAGCATGCCAGGGCTAGGAGGCGGTTCCAGaccactgtgtgtggtgtgttgctcTCTCCTGCGTCTCTCTCATTACCATGACATTCCTTCGCACAGACACTTGACGGCCATCTTTCCTTGTTCCATCGCCATAAGCAACAACAGCCCAGCAGAGAGAAGGAACACAGTGCACATCAAAAATGACGACATTGTACTCTTACTCTCGACATTGTATTCTTCAAATTAAAAAAACAAGTGTAATGAACCCAGATGTTGTTTTCTGTCTAATCTAACCTACTCTCTGACAGGATATGTGTAATCTAAAGAGAATATAGTGACATGGAGTGGCATCTCCTCCAGTATGTATGTAAGCGCTGCATATTAGTCTTTGGCATGGTTCAGTATCGGAGAAGCCCATTGGTTGAGCTGACGTTCACGCCAGACCAATAACAGGAGAGCAGAAGATCAGGTCAATGCTTCATCGTCGTGGATTTAAAAACCTTGTATTTACTTGGTTAAATAACATCCACATACGTTTCCCAGTGACATAGAGGGACATAAAATAAAACCATTAAATCGGAGTCTGAATCGatttagaaaaaaaaaactgttttgattGAAAGAGATCCACCGTATTATCAATTGTAAGACTTTAATTCTTTAAGACTTTAAATTCTTTACGACAGTATTAAGACATCTATAAACGTTCTTCAGGGCTTGAGACTTTTTCAGAGAGGCAGCTGTTCTCATACACTCCTCAGAGTACACTACAGCTGCACCAACCCACCCCAGGAGGTTAAACAGACTGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAACAGACTGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAGACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACTGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACACACCACATCCACCCCAGGAGGTTAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAACAGACTGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAACAGACTGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAACAGACGGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAGACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGAGAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAA
>TU634019
tgatgtagcacggctgtcagccaatcagcattcagggcttgaaccacccagtttgtaaTTCTCTATAAATGGTGAGTGTCAACATCAGGCTGTATTTTGTCTGTTTTACAGCAGGCTAGTGTTCTCCGGAGAATCCAGCTGAGTTTAACACAGCATGTTGGTTTTCTTCCATAGTGAGTAGCATGCCAGGGCTAGGAGGCGGTTCCAGaccactgtgtgtggtgtgttgctcTCTCCTGCGTCTCTCTCATTACCATGACATTCCTTCGCACAGACACTTGACGGCCATCTTTCCTTGTTCCATCGCCATAAGCAACAACAGCCCAGCAGAGAGAAGGAACACAGTGCACATCAAAAATGACGACATTGTACTCTTACTCTCGACATTGTATTCTTCAAATTAAAAAAACAAGTGTAATGAACCCAGATGTTGTTTTCTGTCTAATCTAACCTACTCTCTGACAGGATATGTGTAATCTAAAGAGAATATAGTGACATGGAGTGGCATCTCCTCCAGTATGTATGTAAGCGCTGCATATTAGTCTTTGGCATGGTTCAGTATCGGAGAAGCCCATTGGTTGAGCTGACGTTCACGCCAGACCAATAACAGGAGAGCAGAAGATCAGGTCAATGCTTCATCGTCGTGGATTTAAAAACCTTGTATTTACTTGGTTAAATAACATCCACATACGTTTCCCAGTGACATAGAGGGACATAAAATAAAACCATTAAATCGGAGTCTGAATCGatttagaaaaaaaaaactgttttgattGAAAGAGATCCACCGTATTATCAATTGTAAGACTTTAATTCTTTAAGACTTTAAATTCTTTACGACAGTATTAAGACATCTATAAACGTTCTTCAGGGCTTGAGACTTTTTCAGAGAGGCAGCTGTTCTCATACACTCCTCAGAGTACACTACAGCTGCACCAACCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGAGAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCATCACATcaacctctctcttccccctgtgtAGGAAGCACTGATCAGAACCAAGAGCTTTCAGAACCAAGAGATACAGCAGTCTAGCTAGGGAGGCCTGTCCCGTACCACTGTAGGGGTTGGAGGTCAGGGCCTTATACCACtgtagggttagaggtcagaggttaggatAGTATGTTTAAAACCATGGTTACTTGGTTAGATTACAGTACTGTTCATGTTGCTCTaaacacagtaaaaaaaaaaacagaaaataaatcattcagagaaaatttaaaaaaagaaagcgCCTGAAATGAACTGAAAAAACTAAACAATAAGATGTACAGCTGTAGTTCTAACAATAGTAtaataaacaataataataataataataataataacaacaacaacaacatgtgtgTATAGATATGTAGGTACTAGAGAGGGCTATTCCAGTTATTTCTCTTCTCCTCAGATAGATGATGTTACCTGggtctcaaatggaaccctattctctatagggcACGATCACAGCCCCTAGGGCTcggatcaaaagtagtgcactacgtagggaacaagggtgccatttgggactcacagtCCCGGTCTGGTTGAGGGCGCCTTGCTCCGGGTTTTGGCACAAGACTTTAACGTCCACGGTGAGATGAGACCAGAGGATTGGCTGAAAATGTATTCCATACGGCGAGATGAGACGACGGGACAGGTCTGGGAGACATGACAGGCTCCGCCCCTTACTGGTCCCCCTCCACTCGCCTCTTGCGGACTggagagaagacaggaagaggacaaggAGAAGAGGACAAGGAGGAATTGTACAGTGAGATAGAAACTTGATCAAAAT
>TU634021
AGCCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAATAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAAGTTAAACAGACAGCCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGAGAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCATCACATcaacctctctcttccccctgtgtAGGAAGCACTGATCAGAACCAAGAGCTTTCAGAACCAAGAGATACAGCAGTCTAGCTAGGGAGGCCTGTCCCGTACCACTGTAGGGGTTGGAGgtcagaggttaggatAGTATGTTTAAAACCATGGTTACTTGGTTAGATTACAGTACTGTTCATGTTGCTCTaaacacagtaaaaaaaaaaacagaaaataaatcattcagagaaaatttaaaaaaagaaagcgCCTGAAATGAACTGAAAAAACTAAACAATAAGATGTACAGCTGTAGTTCTAACAATAGTAtaataaacaataataataataataataataataacaacaacaacaacatgtgtgTATAGATATGTAGGTACTAGAGAGGGCTATTCCAGTTATTTCTCTTCTCCTCAGATAGATGATGTTACCTGggtctcaaatggaaccctattctctatagggcACGATCACAGCCCCTAGGGCTcggatcaaaagtagtgcactacgtagggaacaagggtgccatttgggactcacagtCCCGGTCTGGTTGAGGGCGCCTTGCTCCGGGTTTTGGCACAAGACTTTAACGTCCACGGTGAGATGAGACCAGAGGATTGGCTGAAAATGTATTCCATACGGCGAGATGAGACGACGGGACAGGTCTGGGAGACATGACAGGCTCCGCCCCTTACTGGTCCCCCTCCACTCGCCTCTTGCGGACTggagagaagacaggaagaggacaaggAGAAGAGGACAAGGAGGAATTGTACAGTGAGATAGAAACTTGATCAAAAT
>TU634022
AGCCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCATCACATcaacctctctcttccccctgtgtAGGAAGCACTGATCAGAACCAAGAGCTTTCAGAACCAAGAGATACAGCAGTCTAGCTAGGGAGGCCTGTCCCGTACCACTGTAGGGGTTGGAGGTCAGGGCCTTATACCACtgtagggttagaggtcagaggttaggatAGTATGTTTAAAACCATGGTTACTTGGTTAGATTACAGTACTGTTCATGTTGCTCTaaacacagtaaaaaaaaaaacagaaaataaatcattcagagaaaatttaaaaaaagaaagcgCCTGAAATGAACTGAAAAAACTAAACAATAAGATGTACAGCTGTAGTTCTAACAATAGTAtaataaacaataataataataataataataataacaacaacaacaacatgtgtgTATAGATATGTAGGTACTAGAGAGGGCTATTCCAGTTATTTCTCTTCTCCTCAGATAGATGATGTTACCTGggtctcaaatggaaccctattctctatagggcACGATCACAGCCCCTAGGGCTcggatcaaaagtagtgcactacgtagggaacaagggtgccatttgggactcacagtCCCGGTCTGGTTGAGGGCGCCTTGCTCCGGGTTTTGGCACAAGACTTTAACGTCCACGGTGAGATGAGACCAGAGGATTGGCTGAAAATGTATTCCATACGGCGAGATGAGACGACGGGACAGGTCTGGGAGACATGACAGGCTCCGCCCCTTACTGGTCCCCCTCCACTCGCCTCTTGCGGACTggagagaagacaggaagaggacaaggAGAAGAGGACAAGGAGGAATTGTACAGTGAGATAGAAACTTGATCAAAAT
>TU634020
tgatgtagcacggctgtcagccaatcagcattcagggcttgaaccacccagtttgtaaTTCTCTATAAATGGTGAGTGTCAACATCAGGCTGTATTTTGTCTGTTTTACAGCAGGCTAGTGTTCTCCGGAGAATCCAGCTGAGTTTAACACAGCATGTTGGTTTTCTTCCATAGTGAGTAGCATGCCAGGGCTAGGAGGCGGTTCCAGaccactgtgtgtggtgtgttgctcTCTCCTGCGTCTCTCTCATTACCATGACATTCCTTCGCACAGACACTTGACGGCCATCTTTCCTTGTTCCATCGCCATAAGCAACAACAGCCCAGCAGAGAGAAGGAACACAGTGCACATCAAAAATGACGACATTGTACTCTTACTCTCGACATTGTATTCTTCAAATTAAAAAAACAAGTGTAATGAACCCAGATGTTGTTTTCTGTCTAATCTAACCTACTCTCTGACAGGATATGTGTAATCTAAAGAGAATATAGTGACATGGAGTGGCATCTCCTCCAGTATGTATGTAAGCGCTGCATATTAGTCTTTGGCATGGTTCAGTATCGGAGAAGCCCATTGGTTGAGCTGACGTTCACGCCAGACCAATAACAGGAGAGCAGAAGATCAGGTCAATGCTTCATCGTCGTGGATTTAAAAACCTTGTATTTACTTGGTTAAATAACATCCACATACGTTTCCCAGTGACATAGAGGGACATAAAATAAAACCATTAAATCGGAGTCTGAATCGatttagaaaaaaaaaactgttttgattGAAAGAGATCCACCGTATTATCAATTGTAAGACTTTAATTCTTTAAGACTTTAAATTCTTTACGACAGTATTAAGACATCTATAAACGTTCTTCAGGGCTTGAGACTTTTTCAGAGAGGCAGCTGTTCTCATACACTCCTCAGAGTACACTACAGCTGCACCAACCCACCACATCCACCCCAGGAGGTTAACAGACGGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGAGGTTAAACAGACAGCCCTACCAGGACAACCCACCACATCCACCCCAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052285.1 False 2334 mRNA 0.51 2 91023709 91026417
TU634019 False 2155 lncRNA 0.45 2 91022853 91026354
TU634021 False 1522 lncRNA 0.50 2 91022853 91024405
TU634022 False 983 lncRNA 0.46 2 91022853 91024405
TU634020 True 1154 lncRNA 0.45 2 91024481 91026354

Neighbor

gene id symbol gene type direction distance location
LOC118965055 NA coding downstream 34535 90987522 ~ 90989174 (-)
LOC110527014 NA coding downstream 72587 90942792 ~ 90951122 (-)
LOC118936345 LOC106593119 coding downstream 266442 90730463 ~ 90757267 (-)
LOC110526806 s22ai coding downstream 316328 90700073 ~ 90707381 (-)
LOC118964966 LOC100136416 coding downstream 363598 90644590 ~ 90660111 (-)
LOC118965056 NA coding upstream 37433 91063850 ~ 91068906 (-)
LOC110511526 LOC106592072 coding upstream 223775 91248205 ~ 91286961 (-)
LOC118964970 LOC106593544 coding upstream 316781 91343198 ~ 91356880 (-)
LOC110519163 LOC106593544 coding upstream 344517 91370934 ~ 91381714 (-)
LOC110515052 LOC106594640 coding upstream 356461 91382878 ~ 91406945 (-)
G559165 tmod3 non-coding downstream 10020 90997043 ~ 91013689 (-)
G559158 NA non-coding downstream 40184 90983088 ~ 90983525 (-)
G559143 NA non-coding downstream 81022 90941544 ~ 90942687 (-)
G559129 NA non-coding downstream 84273 90937468 ~ 90939436 (-)
G559130 NA non-coding upstream 142 91026559 ~ 91084304 (-)
G559139 NA non-coding upstream 2790 91029207 ~ 91029549 (-)
G559176 NA non-coding upstream 3434 91029851 ~ 91032662 (-)
G559133 NA non-coding upstream 18382 91044799 ~ 91045508 (-)
G559184 NA non-coding upstream 22873 91049290 ~ 91050336 (-)
G559163 NA other downstream 30760 90992436 ~ 90992949 (-)
G559162 NA other downstream 31532 90990830 ~ 90992177 (-)
G559123 NA other downstream 99874 90923098 ~ 90923835 (-)
G558339 LOC106587697 other downstream 1042085 89974182 ~ 89981624 (-)
G558246 LOC106562569 other downstream 1155652 89865968 ~ 89868057 (-)
G559364 NA other upstream 262675 91289092 ~ 91290337 (-)
G559772 NA other upstream 637181 91663598 ~ 91665349 (-)

Expression


Co-expression Network