LOC110515052 (LOC106594640)


Basic Information

Item Value
gene id LOC110515052
gene name LOC106594640
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 91382878 ~ 91406945 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981517.1
aacgTGAGGTTACAGTttaatcaactttcaaagcagaattactttgccATTGTTCATCGAATGCAGTGCatgatatacaattttgtagctcagtgtctctgcttttatccaatgtttATCCTCCTGCATTATTAAATACTCAATGCCACGCCCTCACTTTAAAAAAACCCATGTTTAGTTGAGTTAAGGCAAAGACAATACTGTACGTTGCCTGCAAAGACAATACTGTACGCTGTGAATCTACAATTCACCCAGAAGCATAGGAGCTCGACGTTGTGCTCAACAATGTACTTGGTTTCTATCCTTTTTGCCAGTTTGGCCATCACACCGCTAGTTCTTAAAACGTTCTTCCCTTACTTCTGGAAAGATGCATGGTACCTCGCGAACTTGGTTCGTATTTTGCTGAAGCTTGTTTTACGGAGGAGAAGAAAACCGTTGTTTTTGGTTTTGGACCGATTTTTGGAGCAGTCGGTCGCGCATGCCGACAGACCGTTCATCGTGTTTGAAAATAAAACCTATTCGTATCTGGACACGGACAGAAGAAGCAACAAAATAGCCAATGCTTTACAGAGGCACTCGACGCTGCGACCGGGGGATACCGTGGCTCTTTTTATGGGAAACGAACCTGCCTTCATCTTCACCTGGCTGGCCCTGGCCAAACTGGGATGTCCCGTAGCGTTTCTCAACCATAATATCAGATCTAGATCTCTGCTGCACTGCTTCAACTGTTGCAGCGCCAAGCTGCTCATAGCAGCCGAAGAGCTGCAGGAAGCGGTGGAGGAGGTGCTTCCATCCCTGAgggagcagggtgtgtgtgtctacctgatGACTAAACAGTGTGACACACCTGGCGTGGAGGGGTTCTCTGACCAGGTGGAGGAAGCATCGGACACACCTCTCCCTCAGGCCCTCCGCTCAGACATCACCTTCAAAAGCCCTGCTGTCTACATCTACACCTCTGGCACCACAGGTCTGCCTAAAGCAGCAGTAATTACTCAGAACCGGCTGCTGGTAGCCCTGGCCGTGCTGGACTCCACCGGTATCACaccaggtgatgtcatctacCTCAACCTGCCCCTCTACCACACCGCCGGCTTCCTCATCGGCTTCATAGGATCCATAGAGACAGGCTCCACCATCATTCTGAGGAGGAAGTTCTCAGCCTCTCAGTTCTGGGATGATTGCAGGAAGTACAACGTTACGGTGGTCCAGTACATAGGAGAGGTGTTACGCTACCTCTGTAACACACCCAAGAGAGACAACGACAGAGAGCACAAAGTCAGGCTGGCCATTGGTAACGGTGTGAGAGCAGAGATATGGAAGGAATTCCTGAACCGCTTTGGCAACATCTACGTGAGGGAGTTTTATGCTTCAACGGAGGGCAATGTGGGACTGATCAACTACACCGGGAAGATAGGAGCTATCGGACGAGTCAACTACCTCCACCGGAAGCTGTTTCCTTATGCTCTGATTAAAtacgacacagagagagatgaaccaATCAGAGACTCTACCGGACTGTGTGTAGAAGCTCCTAAAGATGAAACAGGACTGTTGGTGTGCAAGATCACGAACATCACTCCTTTTGTTGGATACGCTAACAGCCagcagacagagaagaagagactgAGAGACGTGTTTCAGAAAGGAGATCTGTACTTTAACAGTGGAGACCTGCTGAAGATAGGCCAGGACAACTTTATTTACTTTCAGGATCGAGTCGGAGATACATTCAGGTGGAAAGGAGAGAATGTGGCCACAACTGAAGTAGCTGACATCCTCACCCTGATAGACTTTGTCCAAGAGGCAAATGTCTACGGTGTTCAAGTACCagGCAACGAGGGGAGGATAGGAATGGCTGCCGTCACGTTGAAGTGGGGAGAACAGTTTGATGGCAACAAAACCTTCAGCCATGTAGCCAGCTACCTACCGGCGTATGCACGGCCACGCTTCATACGCATCCAGaaTGCGGTGGAGATGACGGGGACCTTCAAGCAGATGAAGGTGAGGTTAGTGGAGGAAGGTTTCGACCCGGCAGGCATCACAGACCCTCTGTACATCCTACAGGAGAGAAATCAGAGTTACACACCATTGACTGGCCAGATCTACGGCTCCATAGTGGCAGGCATCATCAAGCTGTGAACAGATCTGTGGTGATACTACTCTTGGGTCCTATTCATTAGGGCATGCAATTGGAAACgtttcaaaaatgttttgcaacggaaaacaaaaatgtgtattacttagtccctccctgttttagtccacGCCAGCCCTCATTCTTTACCTGCGGCATCGTCTGAGACCGGCCACCCGGACAGCTAATGAAACTCAGGAGTATTTCTGtcagtaataaagcccttttgtgtggaaaatctcattctgattggctgggcctgtgTTAAAGTGATTTAAATGTTGAACGATAATGATGAAATAATTCCACTCTGAAACCTTATAactgtatgaaattgattagaatcatgcAATTATTATCTGATGGttttgtgtagttttagtcagtaaAATTATATATCTGTgagtgtagttttagtcagaattagggttAAACAATATATCTGTACAATATGTCTTTATAGTATCTTAAACACAGACTCTCTGAGCAGAATTCAGTGCCGACCTGGCTAGAGGtttgggagaggacagggagtacttctcaaggtctccctaatctttgtcggctgggtaatgatacagtatgtgcgtaggatacctactgtttgtgtgtggaagtatgtgcgtaggatacctactgtttgtgtgtgaatgtaaGTGCATAAGGAGCCAGTATAAAGTGAATGGTTTTGTACAACGGACTAGCGCTCTCATGAATAAACATTTTTGACTATCATA
>TU634506
ATGTTCTGATCATGATGTCTCTGTTATAGAAGCTGTTTCACTATGTTCTGATCACGATGTCTTTCCTGTCTCTTATAGAAGCTGTTTCCTTATGCTCTGATTAAAtacgacacagagagagatgaaccaATCAGAGACTCTACCGGACTGTGTGTAGAAGCTCCTAAAGATGAAACAGGACTGTTGGTGTGCAAGATCACGAACATCACTCCTTTTGTTGGATACGCTAACAGCCagcagacagagaagaagagactgAGAGACGTGTTTCAGAAAGGAGATCTGTACTTTAACAGTGGAGACCTGCTGAAGATAGGCCAGGACAACTTTATTTACTTTCAGGATCGAGTCGGAGATACATTCAGGTGGAAAGGAGAGAATGTGGCCACAACTGAAGTAGCTGACATCCTCACCCTGATAGACTTTGTCCAAGAGGCAAATGTCTACGGTGTTCAAGTACCagGCAACGAGGGGAGGATAGGAATGGCTGCCGTCACGTTGAAGTGGGGAGAACAGTTTGATGGCAACAAAACCTTCAGCCATGTAGCCAGCTACCTACCGGCGTATGCACGGCCACGCTTCATACGCATCCAGaaTGCGGTGGAGATGACGGGGACCTTCAAGCAGATGAAGGTGAGGTTAGTGGAGGAAGGTTTCGACCCGGCAGGCATCACAGACCCTCTGTACATCCTACAGGAGAGAAATCAGAGTTACACACCATTGACTGGCCAGATCTACGGCTCCATAGTGGCAGGCATCATCAAGCTGTGAACAGATCTGTGGTGATACTACTCTTGGGTCCTATTCATTAGGGCATGCAATTGGAAACgtttcaaaaatgttttgcaacggaaaacaaaaatgtgtattacttagtccctccctgttttagtccacGCCAGCCCTCATTCTTTACCTGCGGCATCGTCTGAGACCGGCCACCCGGACAGCTAATGAAACTCAGGAGTATTTCTGtcagtaataaagcccttttgtgtggaaaatctcattctgattggctgggcctgtgTTAAAGTGATTTAAATGTTGAACGATAATGATGAAATAATTCCACTCTGAAACCTTATAactgtatgaaattgattagaatcatgcAATTATTATCTGATGGttttgtgtagttttagtcagtaaAATTATATATCTGTgagtgtagttttagtcagaattagggttAAACAATATATCTGTACAATATGTCTTTATAGTATCTTAAACACAGACTCTCTGAGCAGAATTCAGTGCCGACCTGGCTAGAGGtttgggagaggacagggagtacttctcaaggtctccctaatctttgtcggctgggtaatgatacagtatgtgcgtaggatacctactgtttgtgtgtgaatgtaaGTGCATAAGGAGCCAGTATAAAGTGAATGGTTTTGTACAACGGACTAGCGCTCTCATGAATAAACATTTT

Function

NR:

description
very long-chain acyl-CoA synthetase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981517.1 False 2874 mRNA 0.47 10 91382878 91406945
TU634506 True 1456 TUCP 0.44 6 91382889 91388978

Neighbor

gene id symbol gene type direction distance location
LOC110519163 LOC106593544 coding downstream 1164 91370934 ~ 91381714 (-)
LOC118964970 LOC106593544 coding downstream 25998 91343198 ~ 91356880 (-)
LOC110511526 LOC106592072 coding downstream 95917 91248205 ~ 91286961 (-)
LOC118965056 NA coding downstream 313972 91063850 ~ 91068906 (-)
LOC118964969 NA coding downstream 356461 91022853 ~ 91026417 (-)
LOC118964971 NA coding upstream 97072 91504017 ~ 91505014 (-)
LOC110518475 fsd2 coding upstream 313415 91720360 ~ 91763932 (-)
LOC110500502 LOC106562864 coding upstream 397998 91804173 ~ 91969990 (-)
LOC118964973 NA coding upstream 423331 91830276 ~ 91837002 (-)
LOC110525055 LOC106562861 coding upstream 610277 92017222 ~ 92028355 (-)
G559445 NA non-coding downstream 29125 91351202 ~ 91353753 (-)
G559463 NA non-coding downstream 36306 91345567 ~ 91346572 (-)
G559462 LOC106587893 non-coding downstream 40744 91341906 ~ 91342134 (-)
G559461 NA non-coding downstream 43924 91338568 ~ 91338954 (-)
G559455 NA non-coding downstream 48406 91326852 ~ 91334472 (-)
G559488 NA non-coding upstream 52069 91459014 ~ 91459228 (-)
G559494 NA non-coding upstream 55979 91462924 ~ 91463219 (-)
G559499 NA non-coding upstream 60953 91467898 ~ 91468304 (-)
G559706 NA non-coding upstream 82581 91489526 ~ 91490409 (-)
G559720 NA non-coding upstream 109144 91516089 ~ 91517377 (-)
G559364 NA other downstream 92541 91289092 ~ 91290337 (-)
G559163 NA other downstream 389929 90992436 ~ 90992949 (-)
G559162 NA other downstream 390701 90990830 ~ 90992177 (-)
G559772 NA other upstream 256653 91663598 ~ 91665349 (-)
G559773 NA other upstream 259781 91666726 ~ 91669659 (-)
G559894 NA other upstream 578335 91985280 ~ 91985810 (-)
G560087 LOC106596248 other upstream 660460 92067405 ~ 92068517 (-)

Expression


Co-expression Network