LOC110517107 (LOC106587912)


Basic Information

Item Value
gene id LOC110517107
gene name LOC106587912
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 91764066 ~ 91789867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981524.1
ACGTCATCGTTACAAATGGCCGACGTTGTAAACAAGGCAGAGGAATACAAGTTttagttcgctagctagctagctacatgtttaccacacaaaaaaaatgaataGCATAGACTGCGAACGTTTGGACAGCTTGGACGGCTGGGTCGCCATCAAAACGAACATATTCGAAGAAAACGAGACGTTCAAACTCGGTTTTATCGTTCAGTGGAATGTGATCGAGTCCAAGTTCGCGGTCACCTGTCACAACAGAACTCTCCAGCGACAGAAGCGCAAAGACCAGCTTGCTGTCTGCGAAACCGAAACCAGCTGGGCCGGACTCTTCTCTGTTAACGACTTAAAAAATGTCCACCGTCAGTTTACAGGGGTCGGGGATGTCGTCGCACCCTATTTCCCCGACCTGTCGGACTTCAAGGAGGGTAACATTTGGGACATGATCTTTCTCGGTAGCAATCGGACGTTCAACCAAGATGATCAAGAGAGAGATCTGGATACACCTTGCCGTCAGCTGGAGAAGTACTTCAGCACTGCGATCGATATCTGTGGCAGGAAGATAGTGCTAGACTCGCTTTTCCCGCAGGACGAGCGAGATGTCGAGGAGTACTTTGAGAACATGCAGGAGTTCAAGAGGAAAACCATGCAGGATGAGGTCACCAGGGCTAAGGATCACCTTAGAAAGatcCTTCAGAGTCATGGAGGTGCAGACAGAATGATTCTACTGCTACAGATCTACCACGAGGAGGACTTAGCCTACCAGGACCTGGTCACCGTAGCAACCACCTTCTACCAGTACCTGCTGCAACCCTTCAGAGACATGAGAGAACTGGCAGGGCTCTACAAGATGGAGATACtgAAGTCTCTGGATGAGGAGGAGTTGGGTCCTAAGAGGATAGCAGcactggagagagaggcagaggagtggaggaggagaggagaggatgcagTCTCCTCCATACAGGACATCACAGTCAGCTACTTCATAGAAACATCCAAAGCCcttggagGTATGCTACGTGTGATGGGGGAGGATAAGCGTGGTTTTGGTCAGGCCTCCTGGGCCTCAGCAGCTCCTAGACTGGAGAAGCTGCGTTTCCTGCTGGCTAAAGAGACCCTGCAACACATGAGAGCAACTGAGATGTGTCTGCACCGCAAGAAACACACCATCAGAGagaagATGGGAGGTCTGTCTGGCCAGGACCAGAGGGGACCAGAGACGGTAGATAACCTAGAGATGCAGTACTATGAGGCTCAGCTAGAACTCTACGATGCCAAGTTTGAGATCCTCAAGAACGAAGAGCTCCTATTGGTCGCTCAGATCGACACCCTGCGACGCCAGATGAAAgAGCTGAAAGAGGAGGTGGTGTATTATGATGTGTGTGAGGATCCAGAGGAGCTCCAAAGCCTATCACAGACAGCTGCACCTTTAGACCCCACCCACTCACCTGTCAATCACCTGGGGCGACGCCTACAGCAGCTGGAAGCCAAGAGAGGGAACATATGTGCCCGCCGCGCATACCTCCGCAACAAGAAGGATCAGTGTGTGGAGGCTAACGAGCAGAAGCACCGTCTGGCCCAGCACAGCTCCACTCACTTTACCCAGCACCACGGAGTAGCCCTGaagagagagaagaggagagaggatgaagagaggaggaaggagtggatggaccaggagagagagagaaccctgagCAGACTCCGCTCCTTCAGAGAGAAGCGACAGGGAAGTTACGTCCTGAAGACTCCACGATCCAAGATGGCTGCCAGGGAGCCGCAGTGTTCCGACCTCCCCCAGCCTCTGTCAATCGTTAGCATCGGcccctcctcttcatctaatGGGGCCGCCCCCAGAAAGACCCCCAGGAAACTCAAACCTAAAGACATCCCCGTCCAaatcttcactcctcctctccctcctccttcgcCTCTGCCAACTACACCTCCCACTACAGCTGTACCCCCACCtcagacctcctctcctcctccccctcctcctcctcctcctcccctacccccacctcctccccctccacccctccctgccCTCACCCCCTGTAAGACAGAGGTAGGGGACTCCCCTATGCCTCTCAGTGAGAGAGAGGCTGCACCCTTCCCTGCCAAAATGACCCTGAAGCAGAACCTAGGTTCTATGGACGAGGTGTTGGCATCATTACAGCGTGGTCAGGTCAGGCTGCGTCGTGTCCAGCCCCTTGCCCCTCCTGGTCCCGGCCTGGCGCCCTCCGGGGGCGACCTCAGGGATAACATAATGTCTGCCATCAGACTTGGGGTCAAACTACGCAAGGTGGTCCCAGCGGTGCCCCTGCCCCAGGACAGCAGGGACACGGATCTACAGAGGAGCATCAAGGCAGCCATGCAGAGGATGAAGAAGGTCTCCTCCGACTCGGATGatgaagatgaggagagaggaggggacaacACGCCCTCGGCTGAGTGGGACAGCTGAGAGGAGACGTAtgcacggacagacagacactcggACGCGCACGGACACATCCATAAAAcagccgttgtgtgtgtgtgtgtgtgtgtgtctatacagcGGGGAGAAGATGTAGatatacttatgtcatgcaataaaatgcaaatgaattacttaaaaatcatacaatgtgatatttgttttagattccgtctctcacagttgaagtgcacctatgataaaaaaattacagacctctacatgctttgtaagtaggaaaacctgcaaaatcagcagtggatcaaatacttgttctccccactgtatagacacacacacacacgtactaaTCAATAGGTTAACTATGTTGCCAATGGTTTAGTCGTGTGATTATGCAGGTTTACTGTTTGACGTAAAACTTGATCCATAGAGAAGAGATCGTATCTTAAACACCCTGTAAATGTTTAACTAAAGCACTGTGCCCAAATATCCACCACCTGTTACCACGGTTCAAGGCTACAGCCTCTTTTTCACCAAGCTTTGAAACTAGCTGTTATCTGGCTAAAAAGCTCCCACCGATTCCAGATTTTCATGAATTCTTGTTTGTACGCTTGTCTAGTCTTCCGTTTGCAAACAAGCCTGAGGActtgagtgagtgtgagagtgagagagagagagacctagaaatagaatggaatagattgTATCTATGGTTGCAGGCCCCTGCAGCGTGTTCAAATAGAACAGGTGGTAGACCTTACCGTGTAACGCGGTTCAGTTTgtcatcatgttacactacaatCTCCCTTAATGTTTTGTTTGTCTAGCGCCAGTTGGAACTGGTGTCCGCCCTGCATAGCATAACTGACAAACCATTGAAGGTGAAATCATTTATCTGTTTGTTTCTGCTTCATGCTTTTATCTACGAATGAACAGGAGCTCGTGTTGCCAACTCCGGCACATTTACTTTGATGAGGAAAAATGAAATGTTGACGACTGTGCAGTCTGTGTCCTACAACGCCATATTAATCGCCGTGACGATAAAATAACCCTTTAAGTATGACCTCTGCCCTTCATGAACAGAATAGAGCTTTACCCAGTTTACCACCATGAACTAAAACAGTAGGATGAAGTTGACCCCTGTAGGCACAACAGTCCCTAggatcagcctcctctctcccccccaatCCCAACCTTTAACCATTAGGGGGAATAATCTAAAACTGGCCTTGGGTCAGTGTCTAGGGGGCCCAACTTCACCCTAGTATTTCTAATGATGCTACGTTATTACATGGCACTTGGTTTGACCGGGTTGTCATGGAGATGCAAAAGGCCGTGTTCCAGACTGCCCTGCAAAAGCAGCGTCTTTTAGACAAatgaaccaaatcaaatcaatttatttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactccctagaaaggagtGATTGACTATGTAAGATTTGGTGCGCGACTGCGATGTAGGTGGCCTGGAACATGGCCAGATGTATGAACGAGTGCCAGTGCACTGATTTTAATTATTTTATTGTAAACTGTCAAACCCAGTTTCCATTCGACTGGTAAGTGTTATTTTAAAGAGAGAACGTTGTGTCATTATGCTCAAGTGCCTTGGGGACCTGTAAGTTATTACGAGCTGTCGTTCACCAATAAACTGTTGTTGAGTAAGGTT
>TU634661
GCTAGAACTCTACGATGCCAAGTTTGAGATCCTCAAGAACGAAGAGCTCCTATTGGTCGCTCAGATCGACACCCTGCGACGCCAGATGAAAgAGCTGAAAGAGGAGGTGGTGTATTATGATGTGTGTGAGGATCCAGAGGAGCTCCAAAGCCTATCACAGACAGCTGCACCTTTAGACCCCACCCACTCACCTGTCAATCACCTGGGGCGACGCCTACAGCAGCTGGAAGCCAAGAGAGGGAACATATGTGCCCGCCGCGCATACCTCCGCAACAAGAAGGATCAGTGTGTGGAGGCTAACGAGCAGAAGCACCGTCTGGCCCAGCACAGCTCCACTCACTTTACCCAGCACCACGGAGTAGCCCTGaagagagagaagaggagagaggatgaagagaggaggaaggagtggatggaccaggagagagagagaaccctgagCAGACTCCGCTCCTTCAGAGAGAAGCGACAGGGAAGTTACGTCCTGAAGACTCCACGATCCAAGATGGCTGCCAGGGAGCCGCAGTGTTCCGACCTCCCCCAGCCTCTGTCAATCGTTAGCATCGGcccctcctcttcatctaatGGGGCCGCCCCCAGAAAGACCCCCAGGAAACTCAAACCTAAAGACATCCCCGTCCAaatcttcactcctcctctccctcctccttcgcCTCTGCCAACTACACCTCCCACTACAGCTGTACCCC

Function

NR:

description
WASP homolog-associated protein with actin, membranes and microtubules-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981524.1 False 4208 mRNA 0.50 11 91764066 91789867
TU634661 True 710 TUCP 0.56 5 91775777 91780617

Neighbor

gene id symbol gene type direction distance location
LOC110518175 LOC106562797 coding upstream 43946 91705434 ~ 91720120 (+)
LOC110511547 pde8a coding upstream 64780 91490509 ~ 91699286 (+)
LOC110509505 gatm coding upstream 307369 91436202 ~ 91456724 (+)
LOC110514654 LOC106587893 coding upstream 420844 91293659 ~ 91343222 (+)
LOC110526813 LOC106587896 coding upstream 521897 91239934 ~ 91242169 (+)
LOC118964974 NA coding downstream 23052 91812919 ~ 91814550 (+)
LOC118964972 NA coding downstream 180224 91970091 ~ 91973388 (+)
lctla LOC105026505 coding downstream 241330 92031197 ~ 92044815 (+)
LOC110526817 tipin coding downstream 258231 92048098 ~ 92066565 (+)
LOC118965057 LOC106596248 coding downstream 277573 92067440 ~ 92068228 (+)
G559594 NA non-coding upstream 83615 91679628 ~ 91680451 (+)
G559590 NA non-coding upstream 120426 91643264 ~ 91643640 (+)
G559589 NA non-coding upstream 120932 91642567 ~ 91643134 (+)
G559588 NA non-coding upstream 121864 91641374 ~ 91642202 (+)
G559585 NA non-coding upstream 130763 91633076 ~ 91633303 (+)
G559634 NA non-coding downstream 3940 91793807 ~ 91794181 (+)
G559602 NA non-coding downstream 14453 91804320 ~ 91805344 (+)
G559644 NA non-coding downstream 25611 91815478 ~ 91816243 (+)
G559649 NA non-coding downstream 36138 91826005 ~ 91826549 (+)
G559670 NA non-coding downstream 86253 91876120 ~ 91884316 (+)
LOC110518689 leo1 other upstream 720244 91042534 ~ 91063779 (+)
G559047 NA other upstream 772556 90990786 ~ 90992088 (+)
G559027 NA other upstream 825992 90936917 ~ 90938074 (+)
LOC110526809 LOC106562822 other upstream 879412 90838122 ~ 90932867 (+)
G560039 NA other downstream 513661 92303528 ~ 92304637 (+)
LOC110487142 LOC106587922 other downstream 792699 92440149 ~ 92597197 (+)
G560229 LOC106562795 other downstream 898332 92685849 ~ 92690662 (+)
G559628 NA non-coding downstream 2305 91782922 ~ 91783433 (+)
G559629 NA non-coding downstream 3240 91783857 ~ 91785180 (+)

Expression


Co-expression Network