LOC110526833 (LOC106592039)


Basic Information

Item Value
gene id LOC110526833
gene name LOC106592039
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 93256819 ~ 93272043 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981601.1
CAGGATAGTGCTGAGCCATCACTGGACAGCATTAAAACAACCGTCTGTCCAGGGCTGCGTTACAGCCACCCACCGCAGCCCTCCTCTCTGCCACTGCAGTCCCACGTTCTGTACCACTACTGCCCTGTTGGCCGGATTAACTCATAGAACGGTGAAAAGACCAAACAGACATCATGTCTGAGAAAAAGATGTCATCGAGCCGCAAGCATCATCTGAAGAGCCTGATGCTTCAGATCGCCCAGGAACTGATAGCGGAAGAGGAAGCCCAGTCTTTAGAGGACAGGAAGCAGTACATGAGTGAAAACATCACTCCCCTGCAGCTCACAGGATCCATTGCAGAACTCCAGGACCTGTGTAAGAAGATGCACCAGAAGATTGATGTGATAGATGAGGAGAGATACGACCTGGGCAGCAAAGTTGGCAAAAGTGACaaagagATTGAGGATCTGCAGATTAAAGTACAAGACCTGAAGGGAAAGTTCAAGAAGCCCGTCCTGAAGAAAGTCCGCATGTCTGCTGATGCTATGCTCCAGGCTCTGCTGGGCTCCAAACACAAGGTGTCCATGGATCTGAGGTCCAACCTGAAGCAAGTCAAGAAGGAGGTCAAGGAAGAGGACAAAGAATCTGTGGGTGACTGGCGTAAGAACATCGAAGACAAATCAGACAGAAAGAAGATGTTTGAGACTGCTAAGGAGTAGATGTTCCTGGAGTTCCAGACAGGAAGATGTTTGAGACTGCTAAGGAGTAGATGTTCCTGGAGTTCCAGACAGGAAGATGTTTGTGGCGGCTTGAAAAACCTTCTGCCTTTGGTTACGAAGTTATACAGTTACGActcgtttgtttgtttgtttgtttttcgtCTCTGGCTAAATTCATCTAAGAGGTAGTTCCATCACTCTAGGACTGTTGTGACAGGTGTTAATGAATTGTTATGGTATCTAAGAGGTAGTTCCATCACTCTAGGACTGTTGTGACAGGTGTTAATGAATTGTTATGGTATCTAAGAGGTAGTTCCATCACTCTAGGACTGTTGTGACAGGTGTTAATGAATTGTTATGGTATCTAAGAGGTAGTTCCATCTCTCTAGGACTGCTGTGACAGGTGTTAATGAATTGTTATGGTATCTAAGAGGTAATTCCATCTCCCTGGGACTGCTGT
>XR_005052318.1
CAGGATAGTGCTGAGCCATCACTGGACAGCATTAAAACAACCGTCTGTCCAGGGCTGCGTTACAGCCACCCACCGCAGCCCTCCTCTCTGCCACTGCAGTCCCACGTTCTGTACCACTACTGCCCTGTTGGCCGGATTAACTCATAGAACGGTGAAAAGACCAAACAGACATCATGTCTGAGAAAAAGATGTCATCGAGCCGCAAGCATCATCTGAAGAGCCTGATGCTTCAGATCGCCCAGGAACTGATAGCGGAAGAGGAAGCCCAGTCTTTAGAGGACAGGAAGCAGTACATGAGTGAAAACATCACTCCCCTGCAGCTCACAGGATCCATTGCAGAACTCCAGGACCTGTGTAAGAAGATGCACCAGAAGATTGATGTGATAGATGAGGAGAGATACGACCTGGGCAGCAAAGTTGGCAAAAGTGACaaagagATTGAGGATCTGCAGATTAAAGTACAAGACCTGAAGGGAAAGTTCAAGAAGCCCGTCCTGAAGAAAGTCCGCATGTCTGCTGATGCTATGCTCCAGGCTCTGCTGGGCTCCAAACACAAGGTGTCCATGGATCTGAGGTCCAACCTGAAGCAAGTCAAGAAGGAGGTCAAGGAAGAGGACAAAGAATCTGTGGGTGACTGGCGTAAGAACATCGAAGACAAATCAGACAGAAAGAAGATGTTTGAGACTGCTAAGGAGTAGATGTTCCTGGAGTTCCAGACAGGAAGATGTTTGAGACTGCTAAGGAGTAGATGTTCCTGGAGTTCCAGACAGGAAGATGTTTGTGGCGGCTTGAAAAACCTTCTGCCTTTGGTTACGAAGTTATACAGTTACGActcgtttgtttgtttgtttgtttttcgtCTCTGGCTAAATTCATCTAAGAGGTAGTTCCATCACTCTAGGACTGTTGTGACAGGTGTTAATGAATTGTTATGGTATCTAAGAGGTAGTTCCATCACTCTAGGACTGTTGTGACAGGTGTTAATGAATTGTTATGGTATCTAAGAGGTAGTTCCATCTCTCTAGGACTGCTGTGACAGGTGTTAATGAATTGTTATGGTATCTAAGAGGTAATTCCATCTCCCTGGGACTGCTGT
>XM_036981602.1
CACCCATTTCATCATTACAAACGGTGAAAAGACCAAACAGACATCATGTCTGAGAAAAAGATGTCATCGAGCCGCAAGCATCATCTGAAGAGCCTGATGCTTCAGATCGCCCAGGAACTGATAGCGGAAGAGGAAGCCCAGTCTTTAGAGGACAGGAAGCAGTACATGAGTGAAAACATCACTCCCCTGCAGCTCACAGGATCCATTGCAGAACTCCAGGACCTGTGTAAGAAGATGCACCAGAAGATTGATGTGATAGATGAGGAGAGATACGACCTGGGCAGCAAAGTTGGCAAAAGTGACaaagagATTGAGGATCTGCAGATTAAAGTACAAGACCTGAAGGGAAAGTTCAAGAAGCCCGTCCTGAAGAAAGTCCGCATGTCTGCTGATGCTATGCTCCAGGCTCTGCTGGGCTCCAAACACAAGGTGTCCATGGATCTGAGGTCCAACCTGAAGCAAGTCAAGAAGGAGGTCAAGGAAGAGGACAAAGAATCTGTGGGTGACTGGCGTAAGAACATCGAAGACAAATCAGACAGAAAGAAGATGTTTGAGACTGCTAAGGAGTAGATGTTCCTGGAGTTCCAGACAGGAAGATGTTTGAGACTGCTAAGGAGTAGATGTTCCTGGAGTTCCAGACAGGAAGATGTTTGTGGCGGCTTGAAAAACCTTCTGCCTTTGGTTACGAAGTTATACAGTTACGActcgtttgtttgtttgtttgtttttcgtCTCTGGCTAAATTCATCTAAGAGGTAGTTCCATCACTCTAGGACTGTTGTGACAGGTGTTAATGAATTGTTATGGTATCTAAGAGGTAGTTCCATCACTCTAGGACTGTTGTGACAGGTGTTAATGAATTGTTATGGTATCTAAGAGGTAGTTCCATCACTCTAGGACTGTTGTGACAGGTGTTAATGAATTGTTATGGTATCTAAGAGGTAGTTCCATCTCTCTAGGACTGCTGTGACAGGTGTTAATGAATTGTTATGGTATCTAAGAGGTAATTCCATCTCCCTGGGACTGCTGT

Function

NR:

description
troponin I, fast skeletal muscle-like

GO:

id name namespace
GO:0030239 myofibril assembly biological_process
GO:0005861 troponin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981601.1 False 1158 mRNA 0.46 7 93256819 93268363
XR_005052318.1 False 1096 mRNA 0.47 8 93256819 93268363
XM_036981602.1 True 1030 mRNA 0.45 7 93256819 93272043

Neighbor

gene id symbol gene type direction distance location
LOC110527026 LOC106587956 coding downstream 5380 93245678 ~ 93251439 (-)
LOC118936666 LOC106587920 coding downstream 12995 93230744 ~ 93243824 (-)
LOC110516876 LOC106562850 coding downstream 57772 93111509 ~ 93199396 (-)
LOC110526830 LOC106587935 coding downstream 166188 93063218 ~ 93090631 (-)
LOC110527023 LOC106587927 coding downstream 456138 92795995 ~ 92800681 (-)
cdhr5a LOC106587968 coding upstream 53848 93325891 ~ 93362506 (-)
LOC110526847 LOC106592787 coding upstream 152511 93424554 ~ 93430194 (-)
LOC110514126 LOC106594374 coding upstream 210894 93482937 ~ 93486058 (-)
LOC110516629 LOC106562562 coding upstream 304209 93576252 ~ 93584930 (-)
LOC110516630 LOC106593851 coding upstream 316061 93588104 ~ 93590916 (-)
G560751 NA non-coding downstream 38297 93213560 ~ 93218522 (-)
G560748 NA non-coding downstream 56434 93200175 ~ 93200385 (-)
G560723 NA non-coding downstream 110049 93144350 ~ 93146770 (-)
G560729 NA non-coding downstream 116081 93138836 ~ 93140738 (-)
G560960 NA non-coding upstream 11842 93283885 ~ 93291670 (-)
G560970 NA non-coding upstream 34944 93306987 ~ 93307206 (-)
G560971 NA non-coding upstream 35360 93307403 ~ 93307666 (-)
G560973 NA non-coding upstream 50542 93322585 ~ 93325175 (-)
G560981 NA non-coding upstream 63546 93335589 ~ 93335955 (-)
G560725 NA other downstream 134468 93120371 ~ 93122351 (-)
G560709 NA other downstream 157587 93097173 ~ 93099232 (-)
G560363 NA other downstream 675907 92579897 ~ 92581291 (-)
LOC110526820 LOC106591161 other downstream 1137130 92072533 ~ 92120487 (-)
G560090 dis3l other downstream 1181089 92071282 ~ 92075730 (-)
G561086 NA other upstream 370858 93642901 ~ 93661972 (-)
G561730 NA other upstream 873547 94145590 ~ 94148159 (-)

Expression


Co-expression Network