Gene
RNA
| Item | Value |
|---|---|
| gene id | ccl13 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 93606051 ~ 93664496 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: filaggrin-2-like isoform X4 |
| id | name | namespace |
|---|---|---|
| GO:0006955 | immune response | biological_process |
| GO:0060326 | cell chemotaxis | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0008009 | chemokine activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005052324.1 | False | 792 | mRNA | 0.35 | 4 | 93606051 | 93630353 |
| XM_036981617.1 | False | 749 | mRNA | 0.44 | 3 | 93615232 | 93616341 |
| XM_036981618.1 | False | 553 | mRNA | 0.47 | 3 | 93615266 | 93643990 |
| XR_005052335.1 | False | 859 | mRNA | 0.43 | 5 | 93615269 | 93630363 |
| XR_005052327.1 | False | 1736 | mRNA | 0.39 | 6 | 93615269 | 93653758 |
| XR_005052337.1 | False | 1297 | mRNA | 0.40 | 5 | 93615270 | 93630385 |
| XR_005052332.1 | False | 2618 | mRNA | 0.38 | 8 | 93615270 | 93653758 |
| XR_005052338.1 | False | 1390 | mRNA | 0.39 | 5 | 93615271 | 93623990 |
| XR_005052336.1 | False | 1263 | mRNA | 0.41 | 5 | 93615271 | 93630352 |
| XR_005052325.1 | False | 1009 | mRNA | 0.42 | 4 | 93615271 | 93630359 |
| XR_005052331.1 | False | 1114 | mRNA | 0.41 | 6 | 93615271 | 93630359 |
| XR_005052328.1 | False | 958 | mRNA | 0.42 | 5 | 93615271 | 93630360 |
| XR_005052334.1 | False | 1305 | mRNA | 0.40 | 5 | 93615271 | 93630394 |
| XR_005052333.1 | False | 1370 | mRNA | 0.40 | 5 | 93615271 | 93653758 |
| XR_005052322.1 | False | 1319 | mRNA | 0.40 | 5 | 93615272 | 93630357 |
| XR_005052323.1 | False | 1267 | mRNA | 0.41 | 5 | 93615272 | 93630357 |
| XR_005052330.1 | False | 1059 | mRNA | 0.42 | 5 | 93615272 | 93630357 |
| XR_005052329.1 | False | 1112 | mRNA | 0.41 | 5 | 93615272 | 93630358 |
| XR_005052326.1 | False | 899 | mRNA | 0.40 | 4 | 93622569 | 93630360 |
| TU636646 | False | 1733 | lncRNA | 0.36 | 3 | 93615351 | 93617444 |
| TU636647 | True | 2296 | TUCP | 0.37 | 8 | 93615351 | 93664496 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110515790 | LOC106587975 | coding | upstream | 322 | 93604521 ~ 93605729 (+) |
| LOC110516628 | LOC106587980 | coding | upstream | 37430 | 93536089 ~ 93568621 (+) |
| LOC110526876 | LOC106594020 | coding | upstream | 70399 | 93527742 ~ 93535652 (+) |
| LOC118964985 | LOC105007369 | coding | upstream | 126266 | 93451528 ~ 93479785 (+) |
| LOC110526844 | LOC106587886 | coding | upstream | 168990 | 93430455 ~ 93437061 (+) |
| LOC110514404 | LOC106594891 | coding | downstream | 71012 | 93724770 ~ 93726170 (+) |
| LOC110511757 | LOC106594039 | coding | downstream | 84459 | 93738217 ~ 93746861 (+) |
| LOC110518908 | LOC106594039 | coding | downstream | 98681 | 93752439 ~ 93755044 (+) |
| LOC118965090 | NA | coding | downstream | 180440 | 93834198 ~ 93835805 (+) |
| LOC110526842 | LOC106587964 | coding | downstream | 209935 | 93863693 ~ 93868554 (+) |
| G560905 | NA | non-coding | upstream | 5992 | 93599737 ~ 93600059 (+) |
| G560903 | NA | non-coding | upstream | 8933 | 93596850 ~ 93597118 (+) |
| G560902 | NA | non-coding | upstream | 9961 | 93595807 ~ 93596090 (+) |
| G560888 | NA | non-coding | upstream | 15065 | 93586764 ~ 93590986 (+) |
| G560896 | NA | non-coding | upstream | 25694 | 93580150 ~ 93580357 (+) |
| G560920 | NA | non-coding | downstream | 20996 | 93674754 ~ 93685641 (+) |
| G560921 | NA | non-coding | downstream | 23726 | 93677484 ~ 93678553 (+) |
| G560922 | NA | non-coding | downstream | 27879 | 93681637 ~ 93683604 (+) |
| G560929 | NA | non-coding | downstream | 45557 | 93699315 ~ 93699583 (+) |
| G560930 | NA | non-coding | downstream | 48659 | 93702417 ~ 93702779 (+) |
| G560898 | NA | other | upstream | 24014 | 93581612 ~ 93582037 (+) |
| G560794 | LOC106587968 | other | upstream | 277169 | 93326236 ~ 93328882 (+) |
| G560701 | NA | other | upstream | 388471 | 93212765 ~ 93217580 (+) |
| G560229 | LOC106562795 | other | upstream | 915389 | 92685849 ~ 92690662 (+) |
| G560944 | NA | other | downstream | 86892 | 93740650 ~ 93741187 (+) |
| G561151 | LOC106587945 | other | downstream | 209958 | 93863716 ~ 93885128 (+) |
| LOC110526840 | LOC106587945 | other | downstream | 237787 | 93868748 ~ 93896933 (+) |
| G561215 | NA | other | downstream | 378180 | 94031426 ~ 94039961 (+) |
| LOC110517083 | LOC106593603 | other | downstream | 547455 | 94149171 ~ 94210240 (+) |
| LOC118964987 | ccl13 | coding | downstream | 11932 | 93629376 ~ 93630234 (+) |
| G560908 | NA | non-coding | upstream | 8112 | 93606378 ~ 93607239 (+) |
