XLOC_023981 (spon1b)


Basic Information

Item Value
gene id XLOC_023981
gene name spon1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 15647750 ~ 15800834 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047601
CGGCTGTTCAAACATTCGAGATCtctcttcttctctctctctctctctttctaaacACAGCGTCTTACCAAGAATGTCAGCCGTCTAGGTCTATGGTTTGTTTAAAGTCTGAATCTGTTCTCTTTAAGTCTGAGCTCGGTTATCAAGGAGACCATATAGGTATTTCTCAGTGTGAGTAAAGTCAACATCTGAGTCTTGTGTGTCCGCGCGCTCGCCTTCAGTCAATCTCGCGCTCCGCGGGCACGGGACTATCAGCGGTCCGCAATCTTCTCCTCAGCGGGAATGGATATTGGGTCTTTCCTCTCCTTTTACCCTTGAATGGACCAAGAATTAGAGAGGTCTACTCGATTTATGCTTCTGTTTGTTTTGAGCTCCTTTTCAAGTTCGTTTTCTTGCTGGCGTTCGACTCCAAACTTGTGGGAATGATGGACAAGGACGGGCTGGTTGTGCTGCTAGTTTTCTTAAACGTGTTTTTGATTCACTCGGATGCGTTCAAAAGAGATACCGCGGAGAGACATTCGAGATCTGAGGGGGGTTTCTTGAGTTTGTATGCCTCCAGCCCATCATACTTTCGTGGTTTTACCCTCATTGCTctgaaggaaggaagggagggcGTGAGTCCTGACGATTATGCTGGCACTTTCAAGCTCATTGATGAAAGCGACACACAGTTCATGACCAACTGTCCTCCAGCCGTCACAGAGAGCATTCCCAGGAGACGCACGCGGATACAGGTGTTTTGGACAGCACCACCTTCTGGCAGCGGCTGCGTCACTCTCAAGGCCAGTGTTGTGCAGCGAAGAATCATTTTCTTCCAAGACGAGGGCTCGCTTACCAAAAGATTGTGCGAGAAAGATCCTGTTGCGATTACTGAAAAACCTGCTCAAGAGTGTTGTGCTTGTGGAACAGCCAAGTATAGAGTGACTTTCTATGGAAACTGGTCGGAGAAGCTCCATCCCAAAGATTACCCAAGACGTGCTAATCATTGGTCGGCTCTCATTGGCGCGTCTCACACTAGAAGTTATGTGTTATGGGAATATGGAGGATTTGCCAGTGAAGGAGTCAAGCAGGTGTCCGAGTATGGATCACCCGTCAAAATGGAGGAGGAGATCCGACAAAAGGGTGATGATGTTATGACAGTTATCAAAACCAAAGCCCAGTGGCCCGCCTGGCAGCCTCTTAATATTCGCGCCGCCCCATCAGCTGAGTTTTCGGTGGATCGAGTCCGACACCTGATGTCCTTTTTGACCATGCTGGGCCCCAGTCCTGACTGGAACGTGGGTTTGTCTGGAGAAGATCTCTGCACCAGGGATTGTGGCTGGGTCCAAAAACTGGTGAAGGATCTGGTCCCTTGGGATGCTGGGACTGATAGCGGTGTCTCTTATGAGTCTCCCAATAAACCCAGCATTCCACAGGAGCGCATTCGACCCCTGACCAGCTTGGATCACCCACAAAGCCCTTTTTATGACCCATCAGGTGGTCCCATGACACCACTCGGCCGAGTGGTGGTGGAGAGAATTGCAAGaaagGGAGAGCAGTGCAATACCGTGCCCGACACGATAGACGATATCGTCGCTGATATTGCTcaggaggagaaggaggaagGAGATAACACTCCAGAGACGTGCATTTACTCCAACTGGTCTCCGTGGTCGGCCTGCAGCTCCTCCACCTGTGATAAGGGGCGGAGGATGAGGCAGAGGATGCTAAAAGCGCAGCTGGACCCCAACCTGCCATGTCTGCACACCCAAGACTTTGAGCCCTGTATGGGGCCGGGCTGCAGCGAGGAGGAGGCCTCTACTTGTATGATGTCTGAGTGGATCAGCTGGTCACCCTGCAGCGCTTCATGCGGGATGGGCATGAGGTCCAGAGAGAGGTACGTCAAGCAGTTCCCAGAGGACGGATCCAGCTGCACACTGCCAACAGAGGAGACAGAGAAGTGTGTGGTCAATGACGACTGCTCACCCAGTAGCTGTGTGGTGACGGAGTGGGGCGAGTGGGAGCCCTGTAGTGTAAGCTGTGGTTTGGGCATGAGGAGGAGAGAACGCATGATGAAGATGGACGCCTCGGACGGTTCGCCCTGTCGAGTGCAGATGGCAGAGGCAGAGAAGTGCATGATGCCCGAGTGCAATGCGGTGGTGTGTATGCTGTCGCCATGGTCAGACTGGGGTGAGTGCAGTGTGTCCTGCGGTGTGGGCATGAGAACCCGTCAGCGCATGCTAAAGACACCCGTTAAGCCCGGCCAGTGTCCAGATGAGCTGGAGCAGGTGGAGAAGTGCATGCTTCCCGAATGCCCTACAGACTGCATGCTGTCAGAGTGGTCAGCCTGGTCCGAGTGCAACAAGTCCTGTGGGAAGGGGCACATGATCCGCTCTCGCATGGTCAAGCTGGAGCCTCAGTTTGGAGGTCTGCCCTGTCCTGAGACGGTCCAGAGGAAGAAATGCAAGATCCGCAAGTGCTCGAGAGGCTCCCGGGCCAGCGAGAAGAGGAAGAGACAGGAGGTTTCAGACAGGAGGAGAGCCAAGCAGAGCCGGGAGTCTGTGGCAGAGGAGAGCACAGTCTGTCCAATACGCCCTTGGTCCAGCTGGACGGAGTGTACTAAACCATGTGATGGGGGGACTCAAGAGCGAGTGATGACCATAAAGAAAAAGGGCAAATCCTCACAGCACAACCACTGCAAAAACAAGAAGGAGATCCGTGCGTGCAACGTACACCCATGCTAAAAGTGACTCTTTATCACtgtaatacacatacacacacatacacatgccaGCACACGCAGATGCAGCTCATCCAGAAGCTGAATAGGGCAAAAAGGATGTAGTTTTAACCCAGGGTTTCCAGAAACGGCTGAGGGGTCTGTGCTCCAGTTACAGCTTGTAGGATATTAGAGTAACACACACGTGGACCAGGCCTGTTATCCGTGTTTAGTTTTAGATGCCTTCCTAACGGTCTTATATACTGTATCAATGTATAACCAACACTTTTCAGTACCAACGATATCCATGTGCACTTCTTTCCATCATTCATTATgcacaaaacaaacatatttagacaCATAGCATTCCTGTAAATGGTTTTCTTTTGCATCCAAGCGGTTTGGATGCAACATCATACTGTTTGTAAAGGAAAGCTGTGTTTACTGTCAGCATTTCAGTTTCTAATCCGGGGCTGCGTTTATTGAGCGCAATCAAGGTGGGTCACTCACAAATCAATGCACAATTGATCCGGACAACAAGTGTTTGGGTGAGGAAGGACGATTCCTTTTCCTCAATTGTCAGAAGATTTAGTTGAATGCAGGCTTAGGATGATGCCTATGGGTAGTTTAACATTGTATAAGCACAGCTAAGCATAAccattaaactttttttgtggGAGGGGGGTTGTTTTATAAATCGTGATATATTAACTTTGAGAAAATAGATTGCCATTTTTTATTGCGTTATTAGATGTATAAGAgactaatgtaaaatattaactcCTATGTAGGGAAAGAAGGCATTTCAGTTAGACGTTTCttacttttattgtttaattttgataTATTTAGCTTCAAAAGGTCTTGCCAAAGTCAAGTGTggatttttcttcatttaattttctGTCTCAGTCTGTTTATCTTTTTTTCACTTTCCTTTCACCCTTCCTCTGCAATATTCTGCTATTTTGGAATAAATCTTTACAATAAAAGTTGATGTGACTACA
>TCONS_00047602
CGGGACTATCAGCGGTCCGCAATCTTCTCCTCAGCGGGAATGGATATTGGGTCTTTCCTCTCCTTTTACCCTTGAATGGACCAAGAATTAGAGAGGTCTACTCGATTTATGCTTCTGTTTGTTTTGAGCTCCTTTTCAAGTTCGTTTTCTTGCTGGCGTTCGACTCCAAACTTGTGGGAATGATGGACAAGGACGGGCTGGTTGTGCTGCTAGTTTTCTTAAACGTGTTTTTGATTCACTCGGATGCGTTCAAAAGAGATACCGCGGAGAGACATTCGAGATCTGAGGGGGGTTTCTGTCGGATATTGCGGACGCAGGCGCGGAGCGCTCGGCGAGACGGACAGAACGAGTTTCGCCTCAAAGTTGAAGGAGAGCCAGAAACTTACCAACCCGGGAGCACCTACAGAGTGAGTTTGTATGCCTCCAGCCCATCATACTTTCGTGGTTTTACCCTCATTGCTctgaaggaaggaagggagggcGTGAGTCCTGACGATTATGCTGGCACTTTCAAGCTCATTGATGAAAGCGACACACAGTTCATGACCAACTGTCCTCCAGCCGTCACAGAGAGCATTCCCAGGAGACGCACGCGGATACAGGTGTTTTGGACAGCACCACCTTCTGGCAGCGGCTGCGTCACTCTCAAGGCCAGTGTTGTGCAGCGAAGAATCATTTTCTTCCAAGACGAGGGCTCGCTTACCAAAAGATTGTGCGAGAAAGATCCTGTTGCGATTACTGAAAAACCTGCTCAAGAGTGTTGTGCTTGTGGAACAGCCAAGTATAGAGTGACTTTCTATGGAAACTGGTCGGAGAAGCTCCATCCCAAAGATTACCCAAGACGTGCTAATCATTGGTCGGCTCTCATTGGCGCGTCTCACACTAGAAGTTATGTGTTATGGGAATATGGAGGATTTGCCAGTGAAGGAGTCAAGCAGGTGTCCGAGTATGGATCACCCGTCAAAATGGAGGAGGAGATCCGACAAAAGGGTGATGATGTTATGACAGTTATCAAAACCAAAGCCCAGTGGCCCGCCTGGCAGCCTCTTAATATTCGCGCCGCCCCATCAGCTGAGTTTTCGGTGGATCGAGTCCGACACCTGATGTCCTTTTTGACCATGCTGGGCCCCAGTCCTGACTGGAACGTGGGTTTGTCTGGAGAAGATCTCTGCACCAGGGATTGTGGCTGGGTCCAAAAACTGGTGAAGGATCTGGTCCCTTGGGATGCTGGGACTGATAGCGGTGTCTCTTATGAGTCTCCCAATAAACCCAGCATTCCACAGGAGCGCATTCGACCCCTGACCAGCTTGGATCACCCACAAAGCCCTTTTTATGACCCATCAGGTGGTCCCATGACACCACTCGGCCGAGTGGTGGTGGAGAGAATTGCAAGaaagGGAGAGCAGTGCAATACCGTGCCCGACACGATAGACGATATCGTCGCTGATATTGCTcaggaggagaaggaggaagGAGATAACACTCCAGAGACGTGCATTTACTCCAACTGGTCTCCGTGGTCGGCCTGCAGCTCCTCCACCTGTGATAAGGGGCGGAGGATGAGGCAGAGGATGCTAAAAGCGCAGCTGGACCCCAACCTGCCATGTCTGCACACCCAAGACTTTGAGCCCTGTATGGGGCCGGGCTGCAGCGAGGAGGAGGCCTCTACTTGTATGATGTCTGAGTGGATCAGCTGGTCACCCTGCAGCGCTTCATGCGGGATGGGCATGAGGTCCAGAGAGAGGTACGTCAAGCAGTTCCCAGAGGACGGATCCAGCTGCACACTGCCAACAGAGGAGACAGAGAAGTGTGTGGTCAATGACGACTGCTCACCCAGTAGCTGTGTGGTGACGGAGTGGGGCGAGTGGGAGCCCTGTAGTGTAAGCTGTGGTTTGGGCATGAGGAGGAGAGAACGCATGATGAAGATGGACGCCTCGGACGGTTCGCCCTGTCGAGTGCAGATGGCAGAGGCAGAGAAGTGCATGATGCCCGAGTGCAATGCGGTGGTGTGTATGCTGTCGCCATGGTCAGACTGGGGTGAGTGCAGTGTGTCCTGCGGTGTGGGCATGAGAACCCGTCAGCGCATGCTAAAGACACCCGTTAAGCCCGGCCAGTGTCCAGATGAGCTGGAGCAGGTGGAGAAGTGCATGCTTCCCGAATGCCCTACAGACTGCATGCTGTCAGAGTGGTCAGCCTGGTCCGAGTGCAACAAGTCCTGTGGGAAGGGGCACATGATCCGCTCTCGCATGGTCAAGCTGGAGCCTCAGTTTGGAGGTCTGCCCTGTCCTGAGACGGTCCAGAGGAAGAAATGCAAGATCCGCAAGTGCTCGAGAGGCTCCCGGGCCAGCGAGAAGAGGAAGAGACAGGAGGTTTCAGACAGGAGGAGAGCCAAGCAGAGCCGGGAGTCTGTGGCAGAGGAGAGCACAGTCTGTCCAATACGCCCTTGGTCCAGCTGGACGGAGTGTACTAAACCATGTGATGGGGGGACTCAAGAGCGAGTGATGACCATAAAGAAAAAGGGCAAATCCTCACAGCACAACCACTGCAAAAACAAGAAGGAGATCCGTGCGTGCAACGTACACCCATGCTAAAAGTGACTCTTTATCACtgtaatacacatacacacacatacacatgccaGCACACGCAGATGCAGCTCATCCAGAAGCTGAATAGGGCAAAAAGGATGTAGTTTTAACCCAGGGTTTCCAGAAACGGCTGAGGGGTCTGTGCTCCAGTTACAGCTTGTAGGATATTAGAGTAACACACACGTGGACCAGGCCTGTTATCCGTGTTTAGTTTTAGATGCCTTCCTAACGGTCTTATATACTGTATCAATGTATAACCAACACTTTTCAGTACCAACGATATCCATGTGCACTTCTTTCCATCATTCATTATgcacaaaacaaacatatttagacaCATAGCATTCCTGTAAATGGTTTTCTTTTGCATCCAAGCGGTTTGGATGCAACATCATACTGTTTGTAAAGGAAAGCTGTGTTTACTGTCAGCATTTCAGTTTCTAATCCGGGGCTGCGTTTATTGAGCGCAATCAAGGTGGGTCACTCACAAATCAATGCACAATTGATCCGGACAACAAGTGTTTGGGTGAGGAAGGACGATTCCTTTTCCTCAATTGTCAGAAGATTTAGTTGAATGCAGGCTTAGGATGATGCCTATGGGTAGTTTAACATTGTATAAGCACAGCTAAGCATAAccattaaactttttttgtggGAGGGGGGTTGTTTTATAAATCGTGATATATTAACTTTGAGAAAATAGATTGCCATTTTTTATTGCGTTATTAGATGTATAAGAgactaatgtaaaatattaactcCTATGTAGGGAAAGAAGGCATTTCAGTTAGACGTTTCttacttttattgtttaattttgataTATTTAGCTTCAAAAGGTCTTGCCAAAGTCAAGTGTggatttttcttcatttaattttctGTCTCAGTCTGTTTATCTTTTTTTCACTTTCCTTTCACCCTTCCTCTGCAATATTCTGCTATTTTGGAATAAATCTTTACAATAAAAGTTGATGTGACT
>TCONS_00047603
TTCTTGCTGGCGTTCGACTCCAAACTTGTGGGAATGATGGACAAGGACGGGCTGGTTGTGCTGCTAGTTTTCTTAAACGTGTTTTTGATTCACTCGGATGCGTTCAAAAGAGATACCGCGGAGAGACATTCGAGATCTGAGGGGGGTTTCTGTCGGATATTGCGGACGCAGGCGCGGAGCGCTCGGCGAGACGGACAGAACGAGTTTCGCCTCAAAGTTGAAGGAGAGCCAGAAACTTACCAACCCGGGAGCACCTACAGAGTGAGTTTGTATGCCTCCAGCCCATCATACTTTCGTGGTTTTACCCTCATTGCTctgaaggaaggaagggagggcGTGAGTCCTGACGATTATGCTGGCACTTTCAAGCTCATTGATGAAAGCGACACACAGTTCATGACCAACTGTCCTCCAGCCGTCACAGAGAGCATTCCCAGGAGACGCACGCGGATACAGGTGTTTTGGACAGCACCACCTTCTGGCAGCGGCTGCGTCACTCTCAAGGCCAGTGTTGTGCAGCGAAGAATCATTTTCTTCCAAGACGAGGGCTCGCTTACCAAAAGATTGTGCGAGAAAGATCCTGTTGCGATTACTGAAAAACCTGCTCAAGAGTGTTGTGCTTGTGGAACAGCCAAGTATAGAGTGACTTTCTATGGAAACTGGTCGGAGAAGCTCCATCCCAAAGATTACCCAAGACGTGCTAATCATTGGTCGGCTCTCATTGGCGCGTCTCACACTAGAAGTTATGTGTTATGGGAATATGGAGGATTTGCCAGTGAAGGAGTCAAGCAGGTGTCCGAGTATGGATCACCCGTCAAAATGGAGGAGGAGATCCGACAAAAGGGTGATGATGTTATGACAGTTATCAAAACCAAAGCCCAGTGGCCCGCCTGGCAGCCTCTTAATATTCGCGCCGCCCCATCAGCTGAGTTTTCGGTGGATCGAGTCCGACACCTGATGTCCTTTTTGACCATGCTGGGCCCCAGTCCTGACTGGAACGTGGGTTTGTCTGGAGAAGATCTCTGCACCAGGGATTGTGGCTGGGTCCAAAAACTGGTGAAGGATCTGGTCCCTTGGGATGCTGGGACTGATAGCGGTGTCTCTTATGAGTCTCCCAATAAACCCAGCATTCCACAGGAGCGCATTCGACCCCTGACCAGCTTGGATCACCCACAAAGCCCTTTTTATGACCCATCAGGTGGTCCCATGACACCACTCGGCCGAGTGGTGGTGGAGAGAATTGCAAGaaagGGAGAGCAGTGCAATACCGTGCCCGACACGATAGACGATATCGTCGCTGATATTGCTcaggaggagaaggaggaagGAGATAACACTCCAGAGACGTGCATTTACTCCAACTGGTCTCCGTGGTCGGCCTGCAGCTCCTCCACCTGTGATAAGGGGCGGAGGATGAGGCAGAGGATGCTAAAAGCGCAGCTGGACCCCAACCTGCCATGTCTGCACACCCAAGACTTTGAGCCCTGTATGGGGCCGGGCTGCAGCGAGGAGGAGGCCTCTACTTGTATGATGTCTGAGTGGATCAGCTGGTCACCCTGCAGCGCTTCATGCGGGATGGGCATGAGGTCCAGAGAGAGGTACGTCAAGCAGTTCCCAGAGGACGGATCCAGCTGCACACTGCCAACAGAGGAGACAGAGAAGTGTGTGGTCAATGACGACTGCTCACCCAGTAGCTGTGTGGTGACGGAGTGGGGCGAGTGGGAGCCCTGTAGTGTAAGCTGTGGTTTGGGCATGAGGAGGAGAGAACGCATGATGAAGATGGACGCCTCGGACGGTTCGCCCTGTCGAGTGCAGATGGCAGAGGCAGAGAAGTGCATGATGCCCGAGTGCAATGCGGTGGTGTGTATGCTGTCGCCATGGTCAGACTGGGGTGAGTGCAGTGTGTCCTGCGGTGTGGGCATGAGAACCCGTCAGCGCATGCTAAAGACACCCGTTAAGCCCGGCCAGTGTCCAGATGAGCTGGAGCAGGTGGAGAAGTGCATGCTTCCCGAATGCCCTACAGACTGCATGCTGTCAGAGTGGTCAGCCTGGTCCGAGTGCAACAAGTCCTGTGGGAAGGGGCACATGATCCGCTCTCGCATGGTCAAGCTGGAGCCTCAGTTTGGAGGTCTGCCCTGTCCTGAGACGGTCCAGAGGAAGAAATGCAAGATCCGCAAGTGCTCGAGAGGCTCCCGGGCCAGCGAGAAGAGGAAGAGACAGGAGGTTTCAGACAGGAGGAGAGCCAAGCAGAGCCGGGAGTCTGTGGCAGAGGAGAGCACAGTAGTCTGTCCAATACGCCCTTGGTCCAGCTGGACGGAGTGTACTAAACCATGTGATGGGGGGACTCAAGAGCGAGTGATGACCATAAAGAAAAAGGGCAAATCCTCACAGCACAACCACTGCAAAAACAAGAAGGAGATCCGTGCGTGCAACGTACACCCATGCTAAAAGTGACTCTTTATCACtgtaatacacatacacacacatacacatgccaGCACACGCAGATGCAGCTCATCCAGAAGCTGAATAGGGCAAAAAGGATGTAGTTTTAACCCAGGGTTTCCAGAAACGGCTGAGGGGTCTG

Function

symbol description
spon1b Predicted to enable metal ion binding activity. Predicted to be involved in cell adhesion. Located in extracellular region. Is expressed in several structures, including axis; central nervous system; eye; mesoderm; and pancreatic system. Orthologous to human SPON1 (spondin 1).

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-000427-10 Predicted to enable metal ion binding activity. Predicted to be involved in cell adhesion. Located in extracellular region. Is expressed in several structures, including axis; central nervous system; eye; mesoderm; and pancreatic system. Orthologous to human SPON1 (spondin 1).

Ensembl:

ensembl_id ENSDARG00000023694

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047601 False 3705 mRNA 0.49 16 15647750 15800834
TCONS_00047602 False 3570 mRNA 0.49 16 15647993 15800831
TCONS_00047603 True 2587 mRNA 0.54 16 15648139 15799991

Neighbor

gene id symbol gene type direction distance location
XLOC_023980 NA coding upstream 37755 15540766 ~ 15609995 (+)
XLOC_023979 BX323543.4 coding upstream 157083 15490212 ~ 15490667 (+)
XLOC_023978 BX323543.2 coding upstream 158106 15487494 ~ 15489644 (+)
XLOC_023977 NA coding upstream 160970 15484273 ~ 15486780 (+)
XLOC_023976 kiaa1549la coding upstream 165331 15354095 ~ 15482419 (+)
XLOC_023982 syt9b coding downstream 40836 15841670 ~ 15905903 (+)
XLOC_023983 ppfibp2b coding downstream 132577 15933411 ~ 16042941 (+)
XLOC_023984 sb:cb470 coding downstream 242412 16043246 ~ 16045771 (+)
XLOC_023985 NA coding downstream 266043 16066877 ~ 16075816 (+)
XLOC_023986 far1 coding downstream 279079 16079913 ~ 16129678 (+)
XLOC_023973 CR762411.1 misc upstream 429641 15217824 ~ 15218109 (+)
XLOC_023972 AL929172.2 non-coding upstream 513032 15134602 ~ 15134718 (+)
XLOC_023987 CR759887.4 non-coding downstream 374068 16174902 ~ 16185861 (+)
XLOC_023988 CR759887.2 non-coding downstream 385510 16186344 ~ 16192102 (+)
XLOC_023992 CR376785.1 non-coding downstream 715320 16516154 ~ 16516562 (+)
XLOC_023997 BX004976.1 non-coding downstream 970957 16771791 ~ 16771908 (+)

Expression


Co-expression Network