Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110499808 |
| gene name | LOC106609698 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 94651207 ~ 94695854 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| calcium and integrin-binding family member 2-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036981642.1 | False | 2291 | mRNA | 0.42 | 6 | 94651207 | 94695854 |
| XR_005052354.1 | False | 2145 | mRNA | 0.43 | 7 | 94651207 | 94695854 |
| TU638089 | False | 1161 | lncRNA | 0.40 | 1 | 94651472 | 94652632 |
| TU638090 | True | 555 | TUCP | 0.44 | 4 | 94663366 | 94695831 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110527030 | LOC106609696 | coding | downstream | 32914 | 94579252 ~ 94618293 (-) |
| LOC118964993 | NA | coding | downstream | 77783 | 94570785 ~ 94573424 (-) |
| LOC110525058 | herc1 | coding | downstream | 84370 | 94324853 ~ 94566837 (-) |
| LOC118964990 | LOC105029587 | coding | downstream | 788095 | 93844809 ~ 94253848 (-) |
| LOC110518911 | LOC106562776 | coding | downstream | 825496 | 93820258 ~ 93825711 (-) |
| LOC110500983 | trpm1 | coding | upstream | 73303 | 94769157 ~ 94854085 (-) |
| LOC118964995 | NA | coding | upstream | 140584 | 94836438 ~ 94839842 (-) |
| LOC118964997 | NA | coding | upstream | 297833 | 94993687 ~ 94994963 (-) |
| LOC110517419 | LOC106591491 | coding | upstream | 302801 | 94997378 ~ 95172633 (-) |
| LOC110526865 | gtf2a2 | coding | upstream | 484680 | 95180534 ~ 95182874 (-) |
| G561883 | NA | non-coding | downstream | 4857 | 94646092 ~ 94646350 (-) |
| G561881 | NA | non-coding | downstream | 5698 | 94645288 ~ 94645509 (-) |
| G561880 | NA | non-coding | downstream | 6432 | 94644527 ~ 94644775 (-) |
| G561870 | NA | non-coding | downstream | 27328 | 94623172 ~ 94623879 (-) |
| G561867 | NA | non-coding | downstream | 29001 | 94621542 ~ 94622206 (-) |
| G561904 | NA | non-coding | upstream | 3523 | 94699377 ~ 94699614 (-) |
| G561908 | NA | non-coding | upstream | 4094 | 94699948 ~ 94701082 (-) |
| G561907 | idh3a | non-coding | upstream | 13049 | 94708903 ~ 94710229 (-) |
| G561905 | idh3a | non-coding | upstream | 16824 | 94712678 ~ 94714486 (-) |
| G561918 | NA | non-coding | upstream | 23739 | 94719593 ~ 94720032 (-) |
| G561791 | NA | other | downstream | 313998 | 94336552 ~ 94343200 (-) |
| G561786 | NA | other | downstream | 345773 | 94303980 ~ 94305434 (-) |
| G561730 | NA | other | downstream | 503048 | 94145590 ~ 94148159 (-) |
| G561086 | NA | other | downstream | 989235 | 93642901 ~ 93661972 (-) |
| G561917 | NA | other | upstream | 22294 | 94718148 ~ 94719474 (-) |
| G561923 | NA | other | upstream | 36977 | 94732831 ~ 94733169 (-) |
| G561939 | NA | other | upstream | 146205 | 94842059 ~ 94843245 (-) |
| G562068 | NA | other | upstream | 604856 | 95300710 ~ 95301575 (-) |
| G561886 | NA | non-coding | upstream | 1211 | 94653843 ~ 94654162 (-) |
| G561865 | NA | non-coding | upstream | 11217 | 94663849 ~ 94664328 (-) |
| G561896 | NA | non-coding | upstream | 26467 | 94679099 ~ 94680387 (-) |
| LOC110499808 | LOC106609698 | other | upstream | 10734 | 94651207 ~ 94695854 (-) |
