XLOC_023985


Basic Information

Item Value
gene id XLOC_023985
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 16066877 ~ 16075816 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049210
CTCCACTGCTCAGTCCAGCACACAGCAAATGAAACTGATCAGAGCCTCCAATCTCACTGCATGCATGCATTCATGACCGGACAGACTGGTCACGACTGGACAGAGGAGCCACCAGGCACCGACTGAGCCAACACAGGGGCTACAGAGTTGTTTTTACCTTAACTATGTGGCCCTTCGGGGCATAGATGACCCACCGGCAAAGGCTGTTGTTGCTGTAGGCTTGTGGATAGGCGGGACTTTTTACAGCCCCCTTGGGCTCTAGCAGCACTACTGTTCCACATTCAGCCCCTGCACAAACACAAAAGGAGAAACTGGTGGAATGGAGCCCGGCCGATGACGTTGCACCACAGTGTCACATTTCTGTCTGGCAAGGGTCATACCGAGGGGAGCAGGGGGGTGATTTGAACCACGCTCTTACCTTCTACGAACTTGCTCCGAATTGGTGGATGCCCCCTGGCAGACATGCAACTATGGAAATGGTTCCTTTGAGATAAGATTCTCTACCCTCTATGGAGCCTGAATGGCTGCAGtgtaaaaacacaattaattctACTGGGGTTGCCTACTGCCTTACAATCTGACTGGGGAGCTAAGCAGACCTTGCAGTCCAGGTGATGAAACCAACAGATAAGTCAAGCACAACATGGGCTGCTAAGAAGAGTACATTAAGGGTGGAAGGTTTCTGGACCTCTATGGATACACAGATATGTAAATGCTCGAAAATACAACAGTAGGCCTGTGCAAGCATGCTAATGAAGTACACAGTGTGCAAACATGTTATTTCAATCATCCAAGCAATGTACAGTATGGTGAAACCCAATGACTTCAATAGCACAACTCATTCTGTATTGTCACTGTACTGTTACCAAACAGGTTTGAGGATTCTGAATTTCTCAAGCATGTTTATTCTGTTACCTTCAAAGAATTTGAACATTGACAAgaatttgaaaaaatattgcaCAACAACAAGAGCTTAAGAAATCAGTCTGACAGATTCAACTCACCAAAACTGTAGTCCTCAGGAACACCACTGAACTGGATTGTGAATCCTGCACCTGTGCTGCTTATGTCAGATGCAAATTGTACTTTGACATTATGGGAAGCACCAATAAGAATCGGGGAAGGAGGCTGACTACCACAGAACCGTCCTGGAACATTAAGACATCAGTGAATACTCCAGCTACCCACCGTCCATCTGCTCTGGGGCAGAGAAGAGGACCCCCAGAATCCCCCTGAAGTAGAGGAAGACAGATGGAA
>TCONS_00049211
CTCCACTGCTCAGTCCAGCACACAGCAAATGAAACTGATCAGAGCCTCCAATCTCACTGCATGCATGCATTCATGACCGGACAGACTGGTCACGACTGGACAGAGGAGCCACCAGGCACCGACTGAGCCAACACAGGGGCTACAGAGTTGTTTTTACCTTAACTATGTGGCCCTTCGGGGCATAGATGACCCACCGGCAAAGGCTGTTGTTGCTGTAGGCTTGTGGATAGGCGGGACTTTTTACAGCCCCCTTGGGCTCTAGCAGCACTACTGTTCCACATTCAGCCCCTGCACAAACACAAAAGGAGAAACTGGTGGAATGGAGCCCGGCCGATGACGTTGCACCACAGTGTCACATTTCTGTCTGGCAAGGGTCATACCGAGGGGAGCAGGGGGGTGATTTGAACCACGCTCTTACCTTCTACGAACTTGCTCCGAATTGGTGGATGCCCCCTGGCAGACATGCAACTATGGAAATGGTTCCTTTGAGATAAGATTCTCTACCCTCTATGGAGCCTGAATGGCTGCAGtgtaaaaacacaattaattctACTGGGGTTGCCTACTGCCTTACAATCTGACTGGGGAGCTAAGCAGACCTTGCAGTCCAGGTGATGAAACCAACAGATAAGTCAAGCACAACATGGGCTGCTAAGAAGAGTACATTAAGGGTGGAAGGTTTCTGGACCTCTATGGATACACAGATATGTAAATGCTCGAAAATACAACAGTAGGCCTGTGCAAGCATGCTAATGAAGTACACAGTGTGCAAACATGTTATTTCAATCATCCAAGCAATGTACAGTATGGTGAAACCCAATGACTTCAATAGCACAACTCATTCTGTATTGTCACTGTACTGTTACCAAACAGGTTTGAGGATTCTGAATTTCTCAAGCATGTTTATTCTGTTACCTTCAAAGAATTTGAACATTGACAAgaatttgaaaaaatattgcaCAACAACAAGAGCTTAAGAAATCAGTCTGACAGATTCAACTCACCAAAACTGTAGTCCTCAGGAACACCACTGAACTGGATTGTGAATCCTGCACCTGTGCTGCTTATGTCAGATGCAAATTGTACTTTGACATTATGGGAAGCACCAATAAGAATCGGGGAAGGAGGCTGACTACCACAGAACCGTCCTGGTGAGCAAGATAAAACATCAAACCTCAAATATACCAAGTCATAATTTCTATCATTCTTTCTACCCCTCACCAATTTGCCTACTTTCATCCACATACACAGTCAGTTGGTCGTTTTGGCATTGGGTGTCATTCTCCAGGTCAATCTCAATGAACTTCAGTAGAATTTGCTGACCAGTGGTGACTTGAATGAACCACAAACACATTCTGCCcccaaaaaaaaattgtgtaaaggCTTCCGGTTTTGTGCTTCATATCAAAATATGTAAGATACATCAGATATTACTCACTCATTGTTATTGTAACTTTGTCCTGGAAGAACTGGATTTCTGATGACACCTTCATTTCCAACAACCACTCCATCAGGTACGCTGCACAGAGACCTGTCCAAACCTATAGTACATTGAGTTTGGTAATAAAGTTGCCATTTATTTTAGAGCCACACATTTTACAGAAACTTTGTTTGTGTAGTTATTTACCATACCAGCACATAGAGTTTCATAGCAAATGACAACAGGTTATAAACTCTAACTCAACTTAAGCATTCACCTTTTCTAAGATTTGACTTGATCCATGACAGGAACATTAAGACATCAGTGAATACTCCAGGTGAGCCTCTTCTGGATCCGGGTTTGAACTTGTTATTATTCCAACTTCGACCGCAGCCCTTACCCCATGATGTGACCCCCACAGCTACCCACCGTCCATCTGCTCTGGGGCAGAGAAGAGGACCCCCAGAATCCCCCTGAAGTAGAGGAAGACAGATGGAAACTTTAGTCATGAAGGTATCAGTAATGGCCATGGATCCAGATGCACCTCCTGCAGAACCGAAGAAAGCGACCCTCCTAAAGAGAGAACAGaccttttcagctttgtccctagATCTTTCTCTCAAGTTATTATTTTGAATTCACTGTTGCTCAAATTAGTTCTTACTCTCTGTAATACGACCCCATCCACCAACAACACACATTGTCATTGGTAAAAACCTCTCACCGGGATTAGGCAGACAAACAGGTTTAATATAATCACCTGTGAAGAAAACACATCTGAAAtgtttaattctaataaaaaaataaagttttatagtTGATATAAAGGTATGACTTGCAAAAAGAATGACTTGCCAAAGTGAATGCGTCCATTAATCTCAAGCAAAGCAATGTCGTAGCTCATGG
>TCONS_00049212
CAAAATGCATTGTAAATTTTTGATTCATAAGTGAAGCTTTCATATGAGTAAAACTTTTCTTACATTATAATACTTTTTGAGTTGTCATTTTAGTGGTCATGTCAAATGGACGTCAaggttttaatattaaattaatttacatttttgacttgtttttttacgtttatttttttttacagcaaggTGCCTGCTTGGATACTTTTACGAGagaatgaaaatgttttatgAGATAATGCAACATTTCTCAGGGGAATGCACTACTTTTGCAAGTGAGCTCAAAGTTGCTTTAGAGAACACAATACATTTGCGACCCATCAAAAAGAGTCATCTATTTCTCAATAGAATGCACTTATTGTAGAAGATAATTCAATACTTTtgtaagaacttttttttttgttttttttttgaaggaagaCAAGAATTTGGTAGAGAATATAACATTGTTGCTATCGACTGTTATACTTTATGACAAAATGCAAAGTTTCTTCAGGAAATGTAATGCTTTTTGCGAGGGAGCACAAAAGCATTGAAATGTAACTTTCCTCCATCATCATGTGCCCTTAGGAGCTCTAAAGAAAAcagcttttttattgtttctagcATTACTCACAGGTCATTAACACAGTGTGCATTAGTGAGGATCCATTGTGCCTGGATGATCACCCCGTTGCAGTGGTGGCCTGAATCCAAACTAATGCTCACGTGCCACAGCCAAGGCACTTTCCCATCATCCTCTGCGCTCTTCAGGCCATCCAGTCCAGAGGCATCAGTAACATCAGGCATTCCGCACAAAGCTGAGGAGTGAACACTAGCATGAATACTTGTGGTAAACCAAATACACCCACACAATCTGTTCAGAGATAGATACGTTTGTAATGTTCTCTTATTTTACACATTTGACATGACTCCGGCTGGATTCCTAACATTCTAAAGATCCCCTAAAACAAGAGCCTGTTTTAAAGCTCACTGTGGAGAGCACAAAGGACAAACCAGCCTGCAAATGTGTGAAACTGATCAGAGCCTCCAATCTCACTGCATGCATGCATTCATGACCGGACAGACTGGTCACGACTGGACAGAGGAGCCACCAGGCACCGACTGAGCCAACACAGGGGCTACAGAGTTGTTTTTACCTTAACTATGTGGCCCTTCGGGGCATAGATGACCCACCGGCAAAGGCTGTTGTTGCTGTAGGCTTGTGGATAGGCGGGACTTTTTACAGCCCCCTTGGGCTCTAGCAGCACTACTGTTCCACATTCAGCCCCTGCACAAACACAAAAGGAGAAACTGGTGGAATGGAGCCCGGCCGATGACGTTGCACCACAGTGTCACATTTCTGTCTGGCAAGGGTCATACCGAGGGGAGCAGGGGGGTGATTTGAACCACGCTCTTACCTTCTACGAACTTGCTCCGAATTGGTGGATGCCCCCTGGCAGACATGCAACTATGGAAATGGTTCCTTTGAGATAAGATTCTCTACCCTCTATGGAGCCTGAATGGCTGCAGtgtaaaaacacaattaattctACTGGGGTTGCCTACTGCCTTACAATCTGACTGGGGAGCTAAGCAGACCTTGCAGTCCAGGTGATGAAACCAACAGATAAGTCAAGCACAACATGGGCTGCTAAGAAGAGTACATTAAGGGTGGAAGGTTTCTGGACCTCTATGGATACACAGATATGTAAATGCTCGAAAATACAACAGTAGGCCTGTGCAAGCATGCTAATGAAGTACACAGTGTGCAAACATGTTATTTCAATCATCCAAGCAATGTACAGTATGGTGAAACCCAATGACTTCAATAGCACAACTCATTCTGTATTGTCACTGTACTGTTACCAAACAGGTTTGAGGATTCTGAATTTCTCAAGCATGTTTATTCTGTTACCTTCAAAGAATTTGAACATTGACAAgaatttgaaaaaatattgcaCAACAACAAGAGCTTAAGAAATCAGTCTGACAGATTCAACTCACCAAAACTGTAGTCCTCAGGAACACCACTGAACTGGATTGTGAATCCTGCACCTGTGCTGCTTATGTCAGATGCAAATTGTACTTTGACATTATGGGAAGCACCAATAAGAATCGGGGAAGGAGGCTGACTACCACAGAACCGTCCTGGTGAGCAAGATAAAACATCAAACCTCAAATATACCAAGTCATAATTTCTATCATTCTTTCTACCCCTCACCAATTTGCCTACTTTCATCCACATACACAGTCAGTTGGTCGTTTTGGCATTGGGTGTCATTCTCCAGGTCAATCTCAATGAACTTCAGTAGAATTTGCTGACCAGTGGTGACTTGAATGAACCACAAACACATTCTGCCcccaaaaaaaaattgtgtaaaggCTTCCGGTTTTGTGCTTCATATCAAAATATGTAAGATACATCAGATATTACTCACTCATTGTTATTGTAACTTTGTCCTGGAAGAACTGGATTTCTGATGACACCTTCATTTCCAACAACCACTCCATCAGGAACATTAAGACATCAGTGAATACTCCA
>TCONS_00049213
AGCATGAATACTTGTGGTAAACCAAATACACCCACACAATCTGTTCAGAGATAGATACGTTTGTAATGTTCTCTTATTTTACACATTTGACATGACTCCGGCTGGATTCCTAACATTCTAAAGATCCCCTAAAACAAGAGCCTGTTTTAAAGCTCACTGTGGAGAGCACAAAGGACAAACCAGCCTGCAAATGTGGTGAGATAACTCTGCTATCATCATCTGCTTCCTCCCCCTGATCTTCATACACCGTCTCTCGGAGATCTGCAAGGAAATGTGATATTTAGGGCCTTATCGTTTTGTCATCATTTCACACAGCAGAAGTCTGTGGTTACAAAAACAGTGGTGTCAAAAAAGGCTTAGTAATTTGAGTTAACTAGAAAGCTACTTGATAGCCTTATTATTATGTCTTTGTTGTATAAAAGGTGATCTgttaaaaacttgttttaaagaaatactCCAAATTTTTggaaatccattcagctgatctctgggtcataaatcattgaattagattagatcAGTAGCATCTCgctctaaaatgtttaaaaaagttttgaCAGTTTCTTTCTAGACTCTTCTTTTGTTACATCGTGTGCTAAGACCGACGAAAAATGAAAAGCTTCTATTTTATAGGTTGacatggctaggaactatattgAATTGGAAAATTATcagtaactttttttattgttaatttatgctaaactaagctaaaagttGAGTAAAATGCAAAGTAAAAGCTTGACTGAACgggtttaaaaatggtaaaactcatctATTTAAAAGACTAGTTCATTATATTGAACAGGAAAACTATCatgaactcttttttttattattgatttatgctaagctaagctaaaagtgctcctgctagacctggagattgactgaatggatttaaaaatggtaaaacttaactATTTAAAGGACTAGCTCACTATATTGAACAGGAAAACTATCATTAActcttatttattattgatttaatgctaagctaagctaaaagtgctcctatcAGACTTGGAGATTGACTAAATGTaatcaaaaatggtaaaacaacTGTTTAAAGCACTAGCTCACTATATTGAATATGAAAATTATCATTACctcttatttattattgatttatgctAAGTTAAAAATGCTTCCACCAGACCTGTAGATCGACTGAATTGATTCAAAAATAGAAAAACATAACGGTGTTAAAGGAAAATTaactcaatatttactcacactcaggtGTTTACAAAACTTGTatttgtttctttcttcagttaaacactaaaaaagatattttgaagaaagcaataaaaaaaactttaaccatctacttccatagtaggaaaaacaaatatatgcACTTAAttattacaggtttccagctgtcttcaaaatatcttcttttgtgttcagcatagTATCTCATAGTATACcttaaatgtacaaaagtgaacctTAAAGATACAATAGAGTACCAAGAAGGTACTTTACTAACATCCACCTGTATGGTACAAAAATGTATCTATTAAAAAGgttccaccccagtgacagattttgtacttttatttctgagtgtatatGGGATTTGTAAAATAGgcctattttctaaaaaaaaaaataaataaataaataaattgtgaaaatgaaCTAATAACATTCCTTTAACGATTTGACTTTATTGTTGACCTTTTGAGTAAgcacaaatattttgatgtccGGTAGTGTGTTTATATAGTAGGTTACCTGTGGGTCAGGTTTGCTTGGTTGAAATTTGAACACCTGCATTGAACGTTTTTTCCTCATGTTGACTCTCACCTTTTTCACTGATAAAAGATAGGGAGGCACTGAAACCGCGGGCAGAGATGGTGCTGTCTGTGTTGAACTGCAGATACATTATGTGATTGTAGCTGAGGACAGCTGGAGGAATGCTCTGGCCACATACTGCcacttaaaataaacaacaacaaaataaatagcaCAGCACTGACTACATTTCCCATAATGCTGCATTTTTTCCCTGTGTAACTGATAACAGTGACACTGTAACACAGACAGTGCTTGAAACATAAGACTTCTGACTCTGTAACATTTGCATtgttaatgataaaataaacctAAAGAGTTACAACGTTTTAGATcagcacatttttatttgtaaagacttttttttatttgtcagattttgtttttaaaatactgtcaTTTTCAGCTTTCTATTCATCAAAAAATCCTAAAATGTTTTACTGTAGTTTAGTACATACaaaacaattgtttaaaaatatcagtaatattttctatatttttaataagaaacttcttttaaaaacaagagATTTAACCAACTCCATGAGCATTAGCATGTAGttctgtttaaattaaaacaaaacaaattcttATCTATTGCTTAATAATTCTTTTACCTATTTCATCCTTGCCATCAGTGTCTCCAAACACTGTGAGTGAATCATATTCACAGTCCTCTGACTCCTCAAGATCAAAGTCATCAAAGTCGAGCTTAAAAGTATATAATAGTGTTATTATATTGCAAAAAGCATGTTAGAAAATAGCAAACAGTGATTATGGGGGGACATAGTTCAATTTAGTGCTTCTGACACTTGCAGATATGTAATTTTCAAAAATTATATCTACATTGCATTTAGTAACTACCTGTCTGCAGTAACGTCACAGTGTCGCTCTTTGAAGTCTAATTGAGTATCACATTTTCTCTTGCAGTGAAACTGATCAGAGCCTCCAATCTCACTGCATGCATGCATTCATGACCGGACAGACTGGTCACGACTGGACAGAGGAGCCACCAGGCACCGACTGAGCCAACA

Function

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0048193 Golgi vesicle transport biological_process
GO:0046907 intracellular transport biological_process
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0012505 endomembrane system cellular_component
GO:0030660 Golgi-associated vesicle membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030695 GTPase regulator activity molecular_function
GO:0005096 GTPase activator activity molecular_function
GO:0008047 enzyme activator activity molecular_function
GO:0060589 nucleoside-triphosphatase regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko04080 Neuroactive ligand-receptor interaction
ko04810 Regulation of actin cytoskeleton
ko04911 Insulin secretion
ko04970 Salivary secretion
ko04971 Gastric acid secretion
ko04972 Pancreatic secretion
ko04725 Cholinergic synapse
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049210 False 1257 lncRNA 0.47 4 16066877 16075263
TCONS_00049211 False 2326 lncRNA 0.43 3 16066877 16075816
TCONS_00049212 False 2518 lncRNA 0.41 3 16069829 16075101
TCONS_00049213 True 2840 lncRNA 0.33 1 16070639 16073478

Neighbor

gene id symbol gene type direction distance location
XLOC_023984 sb:cb470 coding upstream 21106 16043246 ~ 16045771 (+)
XLOC_023983 ppfibp2b coding upstream 23936 15933411 ~ 16042941 (+)
XLOC_023982 syt9b coding upstream 160974 15841670 ~ 15905903 (+)
XLOC_023981 spon1b coding upstream 266043 15647750 ~ 15800834 (+)
XLOC_023980 NA coding upstream 456882 15540766 ~ 15609995 (+)
XLOC_023986 far1 coding downstream 4097 16079913 ~ 16129678 (+)
XLOC_023987 CR759887.4 coding downstream 99086 16174902 ~ 16185861 (+)
XLOC_023988 CR759887.2 coding downstream 110528 16186344 ~ 16192102 (+)
XLOC_023989 mical2b coding downstream 118634 16194450 ~ 16309747 (+)
XLOC_023990 parvaa coding downstream 236442 16312258 ~ 16345430 (+)
XLOC_023973 CR762411.1 misc upstream 848768 15217824 ~ 15218109 (+)
XLOC_023979 BX323543.4 non-coding upstream 576210 15490212 ~ 15490667 (+)
XLOC_023978 BX323543.2 non-coding upstream 577233 15487494 ~ 15489644 (+)
XLOC_023977 NA non-coding upstream 580097 15484273 ~ 15486780 (+)
XLOC_023972 AL929172.2 non-coding upstream 932159 15134602 ~ 15134718 (+)
XLOC_023992 CR376785.1 non-coding downstream 440338 16516154 ~ 16516562 (+)
XLOC_023997 BX004976.1 non-coding downstream 695975 16771791 ~ 16771908 (+)
XLOC_023998 NA non-coding downstream 754068 16829884 ~ 16836949 (+)

Expression


Co-expression Network