Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110514610 |
| gene name | LOC106591035 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 96323229 ~ 96392558 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: sporozoite surface protein 2-like isoform X6 |
| id | name | namespace |
|---|---|---|
| GO:0003333 | amino acid transmembrane transport | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0015171 | amino acid transmembrane transporter activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036981671.1 | False | 3925 | mRNA | 0.51 | 12 | 96323229 | 96391898 |
| TU639350 | True | 1562 | lncRNA | 0.43 | 2 | 96390865 | 96392558 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118965000 | LOC106593614 | coding | upstream | 310329 | 95996318 ~ 96012900 (+) |
| LOC110510618 | bat1 | coding | upstream | 352732 | 95900120 ~ 95970508 (+) |
| LOC118965061 | NA | coding | upstream | 423146 | 95899021 ~ 95900083 (+) |
| LOC110512655 | LOC106562400 | coding | upstream | 557065 | 95723489 ~ 95768149 (+) |
| LOC110526881 | LOC106588123 | coding | upstream | 701038 | 95617490 ~ 95622191 (+) |
| LOC110507008 | LOC106588037 | coding | downstream | 605115 | 96997013 ~ 97014268 (+) |
| LOC118965002 | NA | coding | downstream | 958607 | 97350492 ~ 97353435 (+) |
| LOC110516620 | LOC106562854 | coding | downstream | 977813 | 97369711 ~ 97529904 (+) |
| LOC110513174 | LOC106588022 | coding | downstream | 1144636 | 97536534 ~ 97670291 (+) |
| LOC118936669 | NA | coding | downstream | 1288019 | 97679917 ~ 97796621 (+) |
| G562698 | NA | non-coding | upstream | 8876 | 96314114 ~ 96314353 (+) |
| G562697 | NA | non-coding | upstream | 9265 | 96313711 ~ 96313964 (+) |
| G562693 | LOC106597055 | non-coding | upstream | 27417 | 96295347 ~ 96295812 (+) |
| G562692 | NA | non-coding | upstream | 29942 | 96292855 ~ 96293287 (+) |
| G562684 | NA | non-coding | upstream | 50233 | 96272308 ~ 96272996 (+) |
| G562702 | NA | non-coding | downstream | 1557 | 96393455 ~ 96394776 (+) |
| G562701 | NA | non-coding | downstream | 2945 | 96394843 ~ 96396331 (+) |
| G562720 | NA | non-coding | downstream | 13307 | 96405205 ~ 96405540 (+) |
| G562721 | NA | non-coding | downstream | 19891 | 96411789 ~ 96411996 (+) |
| G562706 | NA | non-coding | downstream | 22482 | 96414380 ~ 96417471 (+) |
| G562296 | NA | other | upstream | 548503 | 95772739 ~ 95774726 (+) |
| G562256 | NA | other | upstream | 653922 | 95666330 ~ 95669307 (+) |
| G562248 | NA | other | upstream | 676339 | 95646134 ~ 95646890 (+) |
| G562740 | NA | other | downstream | 89936 | 96481834 ~ 96487225 (+) |
| G563588 | NA | other | downstream | 1530733 | 97922631 ~ 97923034 (+) |
| G563596 | NA | other | downstream | 1558175 | 97950073 ~ 97951916 (+) |
| G562719 | NA | non-coding | upstream | 3966 | 96384736 ~ 96387940 (+) |
| G562718 | NA | non-coding | upstream | 12401 | 96378093 ~ 96378464 (+) |
| G562714 | NA | non-coding | upstream | 42175 | 96348398 ~ 96348690 (+) |
| G562713 | NA | non-coding | upstream | 44301 | 96346292 ~ 96346564 (+) |
| G562712 | NA | non-coding | upstream | 56958 | 96333685 ~ 96333907 (+) |
