XLOC_023986 (far1)


Basic Information

Item Value
gene id XLOC_023986
gene name far1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 16079913 ~ 16129678 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047611
GCAAATGGATTTTACATTAGAGTGGCACTACTGTCCCTTTGGGGATTATAGGGAGAAATCCTTCAATCCTGCTCGGAGATCCTTAAATCCTGCATCCTATAATTTCCCCGTGTGATCTCTTTCCAGAACTCTCACTAGAGAATATACGTTGGATGTGAATTGTCATACAATTCGTTTTTTTCCACACAGGATTATTATTTTGCGCTTGGTGGTGGTGGATTGTGACGTCGGTTCTCTTCTGATAGGCATCACGATCTGGCAACCCATCACAGTTCCTCTCCAGCGAAGCTAAGCTACATCCCCTCTGCGTTTCCCATCACTGCTGAATAGAGTACTAGACCCTTCGTATCGACCGACACGCAAAAAATAGTGCGGGGAAAATATATTCAACATCCAAGGGTGTAACAGAGGAGGGAAGGTGCACTCAGGATGGTCACCATTCCGGAGTATTACGTGGGGAAAAATGTGCTCATCACGGGGGCCACGGGATTTATGGGGAAAGTGCTTTTGGAGAAGCTGTTGCGCTCCTGTCCTGGTGTCAAAGCCGCGTATGTGCTTGTGCGGCCTAAAGCGGGACAGGCTCCTGATGCTCGCATCGCTGACATGATCAACTGTAAGCTTTTCGACAGACTGCGAGAGGATCAGCCGGATTTCGCGGGGAAGATCGTGGCCATCAACAGTGACCTGACACAGCCCAATCTGGACCTGAGTGCTGAAGACCAGGAGACCCTCACGGGCTGCATTAATGTCGTGTTTCACTGTGCCGCCACCATCCGCTTTAATGAGCCGCTGAAAGATGCCATGCAGTTGAATGTGTTGGCCACACAGAAGATGGTCAGCCTGGCTCACAGAATGAAGCATTTGGAGGTGTTTATCCACGTGTCCACAGCCTATGCCAACTGTGACCGAGAGCTCATCGAAGAGGTGGTTTATCCACCGCCCGTTGACTACAGGAAGCTTATAGACACTCTTGAGTGGATGGATGACAAACTGGTGTCTTTGATGACACCTAGGCTGTTGGGTGAGCGGCCGAACACATACACCTACACTAAAGCGCTGGCAGAGCAGCTGGTCCAGCAAGAGTGTGGAAACCTCAACATCGCCATCATAAGACCCTCTATAGTAGGAGCCAGCTGGAAAGAGCCGTTCCCCggcTGGATTGACAATTTCAACGGGCCTAGCGGGATATTCATCGCTGCAGGAAAGGGGATTCTCCGAACAATGAGGGCTTCAAATAACGCCGTCGCTGACCTGGTGCCAGTCGATGTGGTCATAAACACCACTTTAGCTGCTGCCTGGTATTCAGGCTCCCAAAGACACGCCAGGCCGAGAAGTTTGTTAGTGTACAACTGCACGACGGGTGGCATCAATCCTTTTCACTGGGGTGAAGTTGAGTACTGCATAAACATGACGTTCAAGACCAACCCTTTAGAACAGGCTTTCAGACGCCCCAATGTTAACCTGCGCTCCAACCCTTTTACCAATCAGTACTGGACCACAGTGAGTCACACCCTTCCTGCCCTGCTGTATGACGGCTTTCTCATGTTGACGGGTCAGAAGCCCCGGATGATGAAGACCATCACTCGACTGCACAAGGCCATGATGGTGCTGGAGTATTTCACTAGCCACTCCTGGGTCTGGAACACAGACAACGTCACCATGCTCATCTCATCATCTTCTCCTCTCCTAACTGCTATGCACACGTTTCTGCTTCGCGACACTCCAGACTCTGAGGTACAGACTCAATATCCGCTGTCCTCCCCTCGAAAGGGCGCAAGTGCACTCACACTGCTAAATAGAAAGCATGAATTTTTCAGGGTTTGAGGTTTAAgacgctctctctctttctgcgtTTGAGCACTTACTGTAACCCGTTTCACCTCCTGAGCGCAAACAGGTCGTGGACGACTTGATAATTATagtttacatactgtacatgctCATATTTGTCATCGCCAATGGCCCCGTTCCAATCCATGAAGCACAATGagtaaaaacacacaaacaaaacaaaaacaagagatGGCTTTGTCTCGGATCTGTGCCTACGTTCAGAAATGCTCCCAAACGTCTTTGTTGGATTCGTCTGTTTCTGCCTTACTTCTTTCCGATACCTCTCAAAACTCTTTGAGACTAAAGCGATCAGCGTTTCTGCTAATAAATGTCTTTAGCGTCTTATTGTAGTTTCTTTTGTAGTCAATGAACGAAATTGGAGGCTGTGAGGGATTAAAGTGCAAAGTGTTTGAA
>TCONS_00047612
ACAGTTCCTCTCCAGCGAAGCTAAGCTACATCCCCTCTGCGTTTCCCATCACTGCTGAATAGAGTACTAGACCCTTCGTATCGACCGACACGCAAAAAATAGTGCGGGGAAAATATATTCAACATCCAAGGGTGTAACAGAGGAGGGAAGGTGCACTCAGGATGGTCACCATTCCGGAGTATTACGTGGGGAAAAATGTGCTCATCACGGGGGCCACGGGATTTATGGGGAAAGTGCTTTTGGAGAAGCTGTTGCGCTCCTGTCCTGGTGTCAAAGCCGCGTATGTGCTTGTGCGGCCTAAAGCGGGACAGGCTCCTGATGCTCGCATCGCTGACATGATCAACTGTAAGCTTTTCGACAGACTGCGAGAGGATCAGCCGGATTTCGCGGGGAAGATCGTGGCCATCAACAGTGACCTGACACAGCCCAATCTGGACCTGAGTGCTGAAGACCAGGAGACCCTCACGGGCTGCATTAATGTCGTGTTTCACTGTGCCGCCACCATCCGCTTTAATGAGCCGCTGAAAGATGCCATGCAGTTGAATGTGTTGGCCACACAGAAGATGGTCAGCCTGGCTCACAGAATGAAGCATTTGGAGGTGTTTATCCACGTGTCCACAGCCTATGCCAACTGTGACCGAGAGCTCATCGAAGAGGTGGTTTATCCACCGCCCGTTGACTACAGGAAGCTTATAGACACTCTTGAGTGGATGGATGACAAACTGGTGTCTTTGATGACACCTAGGCTGTTGGGTGAGCGGCCGAACACATACACCTACACTAAAGCGCTGGCAGAGCAGCTGGTCCAGCAAGAGTGTGGAAACCTCAACATCGCCATCATAAGACCCTCTATAGTAGGAGCCAGCTGGAAAGAGCCGTTCCCCggcTGGATTGACAATTTCAACGGGCCTAGCGGGATATTCATCGCTGCAGGAAAGGGGATTCTCCGAACAATGAGGGCTTCAAATAACGCCGTCGCTGACCTGGTGCCAGTCGATGTGGTCATAAACACCACTTTAGCTGCTGCCTGGTATTCAGGCTCCCAAAGACACGCCAGGCCGAGAAGTTTGTTAGTGTACAACTGCACGACGGGTGGCATCAATCCTTTTCACTGGGGTGAAGTTGAGTACTGCATAAACATGACGTTCAAGACCAACCCTTTAGAACAGGCTTTCAGACGCCCCAATGTTAACCTGCGCTCCAACCCTTTTACCAATCAGTACTGGACCACAGTGAGTCACACCCTTCCTGCCCTGCTGTATGACGGCTTTCTCATGTTGACGGGTCAGAAGCCCCGGATGATGAAGACCATCACTCGACTGCACAAGGCCATGATGGTGCTGGAGTATTTCACTAGCCACTCCTGGGTCTGGAACACAGACAACGTCACCATGCTCATCATCTTCTCCTCTCCTAACTGCTATGCACACGTTTCTGCTTCGCGACACTCCAGACTCTGAGGTACAGACTCAATATCCGCTGTCCTCCCCTCGAAAGGGCGCAAGTGCACTCACACTGCTAAATAGAAAGCATGAATTTTTCAGGGTTTGAGGTTTAAgacgctctctctctttctgcgtTTGAGCACTTACTGTAACCCGTTTCACCTCCTGAGCGCAAACAGGTCGTGGACGACTTGATAATTATagtttacatactgtacatgctCATATTTGTCATCGCCAATGGCCCCGTTCCAATCCATGAAGCACAATGagtaaaaacacacaaacaaaacaaaaacaagagatGGCTTTGTCTCGGATCTGTGCCTACGTTCAGAAATGCTCCCAAACGTCTTTGTTGGATTCGTCTGTTTCTGCCTTACTTCTTTCCGATACCTCTCAAAACTCTTTGAGACTAAAGCGATCAGCGTTTCTGCTAATAAATGTCTTTAGCGTCTTATTGTAGTTTCTTTTGTAGTCAATGAACGAAATTGGAGGCTGTGAGGGATTAAAGTGCAAAGTGTTTG
>TCONS_00047613
AAGTGTGATTAATGCTCGTGATGGTGTTTTTCAGGGTGTAACAGAGGAGGGAAGGTGCACTCAGGATGGTCACCATTCCGGAGTATTACGTGGGGAAAAATGTGCTCATCACGGGGGCCACGGGATTTATGGGGAAAGTGCTTTTGGAGAAGCTGTTGCGCTCCTGTCCTGGTGTCAAAGCCGCGTATGTGCTTGTGCGGCCTAAAGCGGGACAGGCTCCTGATGCTCGCATCGCTGACATGATCAACTGTAAGCTTTTCGACAGACTGCGAGAGGATCAGCCGGATTTCGCGGGGAAGATCGTGGCCATCAACAGTGACCTGACACAGCCCAATCTGGACCTGAGTGCTGAAGACCAGGAGACCCTCACGGGCTGCATTAATGTCGTGTTTCACTGTGCCGCCACCATCCGCTTTAATGAGCCGCTGAAAGATGCCATGCAGTTGAATGTGTTGGCCACACAGAAGATGGTCAGCCTGGCTCACAGAATGAAGCATTTGGAGGTGTTTATCCACGTGTCCACAGCCTATGCCAACTGTGACCGAGAGCTCATCGAAGAGGTGGTTTATCCACCGCCCGTTGACTACAGGAAGCTTATAGACACTCTTGA
>TCONS_00047614
GGTGTAACAGAGGAGGGAAGGTGCACTCAGGATGGTCACCATTCCGGAGTATTACGTGGGGAAAAATGTGCTCATCACGGGGGCCACGGGATTTATGGGGAAAGTGCTTTTGGAGAAGCTGTTGCGCTCCTGTCCTGGTGTCAAAGCCGCGTATGTGCTTGTGCGGCCTAAAGCGGGACAGGCTCCTGATGCTCGCATCGCTGACATGATCAACTGTAAGCTTTTCGACAGACTGCGAGAGGATCAGCCGGATTTCGCGGGGAAGATCGTGGCCATCAACAGTGACCTGACACAGCCCAATCTGGACCTGAGTGCTGAAGACCAGGAGACCCTCACGGGCTGCATTAATGTCGTGTTTCACTGTGCCGCCACCATCCGCTTTAATGAGCCGCTGAAAGATGCCATGCAGTTGAATGTGTTGGCCACACAGAAGATGGTCAGCCTGGCTCACAGAATGAAGCATTTGGAGGTGTTTATCCACGTGTCCACAGCCTATGCCAACTGTGACCGAGAGCTCATCGAAGAGGTGGTTTATCCACCGCCCGTTGACTACAGGAAGCTTATAGACACTCTTGAGTGGATGGATGACAAACTGGTGTCTTTGATGACACCTAGGCTGTTGGGTGAGCGGCCGAACACATACACCTACACTAAAGCGCTGGCAGAGCAGCTGGTCCAGCAAGAGTGTGGAAACCTCAACATCGCCATCATAAGACCCTCTATAGTAGGAGCCAGCTGGAAAGAGCCGTTCCCCggcTGGATTGACAATTTCAACGGGCCTAGCGGGATATTCATCGCTGCAGGAAAGGGGATTCTCCGAACAATGAGGGCTTCAAATAACGCCGTCGCTGACCTGGTGCCAGTCGATGTGGTCATAAACACCACTTTAGCTGCTGCCTGGTATTCAGGCTCCCAAAGACACGCCAGGCCGAGAAGTTTGTTAGTGTACAACTGCACGACGGGTGGCATCAATCCTTTTCACTGGGGTGAAGTTGAGTACCATGTTATATCCACTTTCAAGAGGAACCCCCTCGAGCAGGCCTTCAGGCGGCCAAACGTAAATCTCACAACCAATCACCTAATCAATCAGTACTGGATTGCTGTAAGCCACAAGGCGCCAGCATTCCTGTACGATCTCTTCCTCAGGATGTCGGGAAGAGAGCCCAGGATGATGAAGACCATCACTCGACTGCACAAGGCCATGATGGTGCTGGAGTATTTCACTAGCCACTCCTGGGTCTGGAACACAGACAACGTCACCATGCTCATGAACCAGATGGGGGCCGAGGAtaagaagGTATTTAACTTTGACGTCAGGCAGTTACACTGGGCAGAATATATGGAGAATTACTGCATGGGCACCAAGAAGTATGTTCTCAATGAAGAGCTGTCAGGACTCCCAGCGGCACGCAAACACTTGAACAAGCTGCGGAATATTCGCTACACTTTCAACACTGTTCTGGTGGTTTTAATCTGGCGCATTTTCATCGCCCGCTCGCAGATGGCCAGAAACATCTGGTACTTCGTGGTCAGCTTGTGCTTCAAGTTCCTGTCTTATTTCAGAGCCTCCAGCACCATGAGATACTGA
>TCONS_00047615
AGTACCATGTTATATCCACTTTCAAGAGGAACCCCCTCGAGCAGGCCTTCAGGCGGCCAAACGTAAATCTCACAACCAATCACCTAATCAATCAGTACTGGATTGCTGTAAGCCACAAGGCGCCAGCATTCCTGTACGATCTCTTCCTCAGGATGTCGGGAAGAGAGCCCAGGATGATGAAGACCATCACTCGACTGCACAAGGCCATGATGGTGCTGGAGTATTTCACTAGCCACTCCTGGGTCTGGAACACAGACAACGTCACCATGCTCATGAACCAGATGGGGGCCGAGGAtaagaagGTATTTAACTTTGACGTCAGGCAGTTACACTGGGCAGAATATATGGAGAATTACTGCATGGGCACCAAGAAGTATGTTCTCAATGAAGAGCTGTCAGGACTCCCAGCGGCACGCAAACACTTGAACAAGCTGCGGAATATTCGCTACACTTTCAACACTGTTCTGGTGGTTTTAATCTGGCGCATTTTCATCGCCCGCTCGCAGATGGCCAGAAACATCTGGTACTTCGTGGTCAGCTTGTGCTTCAAGTTCCTGTCTTATTTCAGAGCCTCCAGCACCATGAGATACTGAATCCTCATCTTCGCCCTCATCATCTTCT
>TCONS_00047616
AGTACTGCATAAACATGACGTTCAAGACCAACCCTTTAGAACAGGCTTTCAGACGCCCCAATGTTAACCTGCGCTCCAACCCTTTTACCAATCAGTACTGGACCACAGTGAGTCACACCCTTCCTGCCCTGCTGTATGACGGCTTTCTCATGTTGACGGGTCAGAAGCCCCGGATGATGAAGACCATCACTCGACTGCACAAGGCCATGATGGTGCTGGAGTATTTCACTAGCCACTCCTGGGTCTGGAACACAGACAACGTCACCATGCTCATGAACCAGATGGGGGCCGAGGAtaagaagGTATTTAACTTTGACGTCAGGCAGTTACACTGGGCAGAATATATGGAGAATTACTGCATGGGCACCAAGAAGTATGTTCTCAATGAAGAGCTGTCAGGACTCCCAGCGGCACGCAAACACTTGAACAAGCTGCGGAATATTCGCTACACTTTCAACACTGTTCTGGTGGTTTTAATCTGGCGCATTTTCATCGCCCGCTCGCAGATGGCCAGAAACATCTGGTACTTCGTGGTCAGCTTGTGCTTCAAGTTCCTGTCTTATTTCAGAGCCTCCAGCACCATGAGATACTGAATCCTCATCTTCGCCCTCATCATCTTCT

Function

symbol description
far1 Predicted to enable fatty-acyl-CoA reductase (alcohol-forming) activity. Predicted to be involved in long-chain fatty-acyl-CoA metabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in peroxisomal membrane. Predicted to be integral component of membrane. Predicted to be active in peroxisome. Is expressed in several structures, including nervous system; notochord; pronephric duct; solid lens vesicle; and ventral mesenchyme. Orthologous to human FAR1 (fatty acyl-CoA reductase 1).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0035336 long-chain fatty-acyl-CoA metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005777 peroxisome cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity molecular_function
GO:0102965 alcohol-forming fatty acyl-CoA reductase activity molecular_function

KEGG:

id description
ko04011 MAPK signaling pathway - yeast
ko04111 Cell cycle - yeast

ZFIN:

id description
ZDB-GENE-040426-2908 Predicted to enable fatty-acyl-CoA reductase (alcohol-forming) activity. Predicted to be involved in long-chain fatty-acyl-CoA metabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in peroxisomal membrane. Predicted to be integral component of membrane. Predicted to be active in peroxisome. Is expressed in several structures, including nervous system; notochord; pronephric duct; solid lens vesicle; and ventral mesenchyme. Orthologous to human FAR1 (fatty acyl-CoA reductase 1).

Ensembl:

ensembl_id ENSDARG00000006899

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047611 False 2247 mRNA 0.49 11 16079913 16129678
TCONS_00047612 False 1972 mRNA 0.50 11 16080181 16129676
TCONS_00047613 False 610 mRNA 0.53 3 16098620 16105168
TCONS_00047614 False 1588 mRNA 0.52 11 16098654 16129083
TCONS_00047615 False 621 mRNA 0.49 4 16116740 16129111
TCONS_00047616 True 621 mRNA 0.49 4 16117138 16129111

Neighbor

gene id symbol gene type direction distance location
XLOC_023985 NA coding upstream 4097 16066877 ~ 16075816 (+)
XLOC_023984 sb:cb470 coding upstream 34142 16043246 ~ 16045771 (+)
XLOC_023983 ppfibp2b coding upstream 36972 15933411 ~ 16042941 (+)
XLOC_023982 syt9b coding upstream 174010 15841670 ~ 15905903 (+)
XLOC_023981 spon1b coding upstream 279079 15647750 ~ 15800834 (+)
XLOC_023987 CR759887.4 coding downstream 45224 16174902 ~ 16185861 (+)
XLOC_023988 CR759887.2 coding downstream 56666 16186344 ~ 16192102 (+)
XLOC_023989 mical2b coding downstream 64772 16194450 ~ 16309747 (+)
XLOC_023990 parvaa coding downstream 182580 16312258 ~ 16345430 (+)
XLOC_023991 tead1a coding downstream 226405 16356083 ~ 16431599 (+)
XLOC_023973 CR762411.1 misc upstream 861804 15217824 ~ 15218109 (+)
XLOC_023980 NA non-coding upstream 469918 15540766 ~ 15609995 (+)
XLOC_023979 BX323543.4 non-coding upstream 589246 15490212 ~ 15490667 (+)
XLOC_023978 BX323543.2 non-coding upstream 590269 15487494 ~ 15489644 (+)
XLOC_023977 NA non-coding upstream 593133 15484273 ~ 15486780 (+)
XLOC_023992 CR376785.1 non-coding downstream 386476 16516154 ~ 16516562 (+)
XLOC_023997 BX004976.1 non-coding downstream 642113 16771791 ~ 16771908 (+)
XLOC_023998 NA non-coding downstream 700206 16829884 ~ 16836949 (+)

Expression


Co-expression Network