LOC118965002


Basic Information

Item Value
gene id LOC118965002
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 97350492 ~ 97353435 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052365.1
acaccactctgacatcaataggttatagagggagatacGTAGAGTCAACACCACTCTGACACcaataggttatagagggagatacGTAGAGTCAACACCAATAGgTTATAGAGTGAGATATGTAGAGTCAACACCACTCTGACACcaataggttatagagggagatacGTAGAGTCAACACCACTCTGACACcaataggttatagagggagatatgTAGAGTCAACACCAATAGGTTATAGAGTGAGATACGTAGAGTCAACACcaataggttatagagggagatacgtagagtcaacaccaataggttatagagggagatacgtagagtcaacaccaata
>XR_005052366.1
atacgtagagtcaacaccaataggttatagagggagatacGTAGAGTCAACACCAATAGTTTATAGAGTGAGATATGTAGAGTCaaaaccactctgacatcaataggttatagagggagatacgtagagtcaacaccaataggTTATAGAGTGAGATATGTAGAGTCAACACCACTCTGACACcaataggttatagagggagatacGTAGAGTCAACACCACTCTGACACcaatagGTTATAGAGTGAGATACGTAGAGTCAACACcaataggttatagagggagatacgtagagtcaacaccaataggttatagagggagatacgtagagtcaacaccaata
>TU639787
gtatgtagagtcaacaccactctgacatcaataggttatagagggagatatgTAGAGTCAACATcaataggttatagagggagatacGTAGAGTCAACACCACTCTGACACcaataggttatagagggagatacGTAGAGTCAACACCAATAGgttatagagggagatacGTAGAGTCaacaccactctgacatcaataggttatagagggagatacGTAGATTCaacaccactctgacatcaataggTTATAGAGTGAGATATCTAGAGTCaacaccactctgacatcaataggttatagagggagatatgtagagtcaacaccactctgacatcaataggttatagagggagatacgtagagtcaacaccaataggttatagagggagatacgtagagtcaacaccaataggTTATAGAGTGAGATATGTAGAGTCAACACcaataggttatagagggagatacgtagagtcaacaccaataggttatagagggagatatgtagagtcaacaccactctgacatcaataggttatagaggg
>TU639794
gtatgtagagtcaacaccactctgacatcaataggttatagagggagatatgTAGAGTCAACATcaataggttatagagggagatacGTAGAGTCAACACCACTCTGACACcaataggttatagagggagatacGTAGAGTCaacaccactctgacatcaataggttatagagggagatatgtagagtcaacaccactctgacatcaataggttatagagggagatacgtagagtcaacaccaataggttatagagggagatacgtagagtcaacaccaataggttatagagggagatacgtagagtcaacaccaataggttatagagggagatatgtagagtcaacaccactctgacatcaataggTTATAGAGTGAGATATGTAGAGTCAACACCACTCTGACACcaataggttatagagggagatacGTAGAGTCAACACCACTCTGACACcaataggttatagagggagatacGTAGAGTCAACACCAATAGGTTATAGAGTGAGATACGTAGAGTCAACACcaataggttatagagggagatacgtagagtcaacaccaataggttatagagggagatatgTAGAGTCAACACCACTGTCTCTATGTCAAAGGCTTCACTTACTGAAAGCACATGATTCAATTTGTCAAAGTTAACATTGAGTCAAACATTTACAGAGCAGTAACCACTTGAAAGAGACAAATGAGCGACAATATAAAAAATAGGTAGGTGAGAGGGTGAGGGAGCACGACGATGACGACAACACTGAGTTTATAACGGTGACTTCGCATTCTTCATTATTTTAGTCAGTCAGTGTTACAAAGGTGGAAACACTGAAATAACACAGAAAatcaatgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacagtaccagttaaaagtttggac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052365.1 False 341 mRNA 0.42 3 97350505 97352860
XR_005052366.1 False 343 mRNA 0.40 3 97352086 97352860
TU639787 False 543 lncRNA 0.41 4 97350492 97352532
TU639794 True 926 lncRNA 0.40 7 97350492 97353435
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Neighbor

gene id symbol gene type direction distance location
LOC110507008 LOC106588037 coding upstream 336237 96997013 ~ 97014268 (+)
LOC110514610 LOC106591035 coding upstream 958607 96323229 ~ 96392558 (+)
LOC118965000 LOC106593614 coding upstream 1337605 95996318 ~ 96012900 (+)
LOC110510618 bat1 coding upstream 1380008 95900120 ~ 95970508 (+)
LOC118965061 NA coding upstream 1450422 95899021 ~ 95900083 (+)
LOC110516620 LOC106562854 coding downstream 16851 97369711 ~ 97529904 (+)
LOC110513174 LOC106588022 coding downstream 183674 97536534 ~ 97670291 (+)
LOC118936669 NA coding downstream 327057 97679917 ~ 97796621 (+)
plekhg4 LOC106594058 coding downstream 444799 97797659 ~ 97943775 (+)
LOC118965004 NA coding downstream 591396 97944256 ~ 97947528 (+)
G562984 NA non-coding upstream 6386 97321877 ~ 97344119 (+)
G562978 NA non-coding upstream 50576 97297828 ~ 97299929 (+)
G562971 NA non-coding upstream 68785 97280315 ~ 97281720 (+)
G562966 NA non-coding upstream 78630 97271119 ~ 97271875 (+)
G562954 NA non-coding upstream 101106 97243931 ~ 97249399 (+)
G563415 NA non-coding downstream 24767 97377627 ~ 97378318 (+)
G563416 NA non-coding downstream 26876 97379736 ~ 97380132 (+)
G563419 NA non-coding downstream 32178 97385038 ~ 97385858 (+)
G563436 NA non-coding downstream 92921 97445781 ~ 97446834 (+)
G563438 NA non-coding downstream 103001 97455861 ~ 97461743 (+)
G562740 NA other upstream 863280 96481834 ~ 96487225 (+)
G562719 NA other upstream 962565 96384736 ~ 96387940 (+)
G562296 NA other upstream 1575779 95772739 ~ 95774726 (+)
G563588 NA other downstream 569771 97922631 ~ 97923034 (+)
G563596 NA other downstream 597213 97950073 ~ 97951916 (+)
G564164 NA other downstream 1127720 98480580 ~ 98483302 (+)

Expression

LOC118965002 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 15.
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LOC118965002 Expression in each Bioproject

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LOC118965002 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
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Co-expression Network