XLOC_023987 (CR759887.4)


Basic Information

Item Value
gene id XLOC_023987
gene name CR759887.4
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 16174902 ~ 16185861 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047617
TCTGGACCGGAAGTAGGGAAAACTTTGTTCCGGTAGAAACAAAGAGCATTGGTGGAGACGAGTAATCAATCTTGTAGCGTACCTTtttgtacttatttaaaaaagaaactgtCGTATATGTCGTTTAATAGGTTTCCCAGCGTTTAAAATATTAGGATGCGTTGGATTTGGTGCTATTCGGAGAGATGAGTGGATTTTACTGTGAGGAAAGGCAGCACTTTTTTGTGTGCTATGCTCTTCACGGAGGATGAAGTTCTCGTCCATCCACAGTCCAGCCGTAAATTTCTTACACCACAGGATGTGCCTTCCAGGTTTTGATGGAAAAACTGGGGAGAGGTTAAATCACGCCAGACGAGGACGGCAAAAATTACGGTCTGTTATAAGCAGCAGGAGGAAGAACCTGTTGAAATGGAGTGCGTTGCCGCCCTCCTCCGGCAGTGGGTAGTTCAGTTCACCGAGGCCCGCATCTGGACATCAGTGATACCCTGGAGGAGAATGTGGCTCACGGACAAATCACTTTAAACGAGATGTTCAGAGAGGTGGAGAAACTGATGGAGGACACACAGCACAAGCTTGATGAGGCTGTGCATCAGGTATTGTTTGTATTCTAAGCAATAAACAGacatgaactgaactaaaactgcttttaataatGGCGGTCTACAACAACAAGTGCCCAAGAACCAGGACAACAGCGTCCCTACCGGATGCAGGTCATGTATGCTATTACTCGGTGTAACATCTCCCTTTCTTTAGAGAATCACTTAACTTCACAGGAAACAGTAGGTCATCAAATACTAACTAacgaataacttttttttataactcCCCTTTGATGCTAGCCTAATAGCCTACTAGAACTCACAAGTTAAGTCTCTGTGGTGGCCATGATTGACGGCCGCTGCAAGTGATGATCGGCGCTCCC
>TCONS_00049035
atgctCTGTGTGGGTTTAGCAGTGGGTAGTTCAGTTCACCGAGGCCCGCATCTGGACATCAGTGATACCCTGGAGGAGAATGTGGCTCACGGACAAATCACTTTAAACGAGATGTTCAGAGAGGTGGAGAAACTGATGGAGGACACACAGCACAAGCTTGATGAGGCTGTGCATCAGATGCTGTGAAGTGATGGAGTCCAGATGCTACAGGCACAGAAAAAGATGCAGCAATGGAGGAACACAGTGAGCACCTTCCAGGAAGAGCTGGAGGATAGTAGAAATAAAGactctaaaataaaattttacttgtGTTGTCCATATTTCTgttttgtaggttttttttttcttattagatGTGTCTGTTTGACTGTGATGTAAATCTGTGActatatgaacaataaataatttgCTTAATTGTAACA
>TCONS_00047618
atgctCTGTGTGGGTTTAGCAGTGGGTAGTTCAGTTCACCGAGGCCCGCATCTGGACATCAGTGATACCCTGGAGGAGAATGTGGCTCACGGACAAATCACTTTAAACGAGATGTTCAGAGAGGTGGAGAAACTGATGGAGGACACACAGCACAAGCTTGATGAGGCTGTGCATCAGATGGAGAACGAGACTACAAAATCACTGTTAAATGGACGCGACTTTCCAGACAACTTTCACGATGAAACTACGACAGAAATTAAGGTTCATAATttcatatgcagttgaagtcagaattattaaccccctgaattattagcccccggttatttattattttttgctaagttcagtttaacagagagaagattttttttaacacatttctgaacataatagtttagaATTGTCTCCAGTGCAAATAATCCTCTGTCATCCCACTCACTGAGGACACTGCAGTGTAGGTGAGAAACTTGTTGAATGCTTAAAAGTGTATTTCAGAATTTCTGAGTCCATGTTTGCAAATCTAGAGCCTGTAGTGGTGAACAATGCTCAAACACTATTTAACCACGTGCTGGAATACTTAGCCTGCtatttattttcacacattcatGTTTTCATATCTTAATCTGGCCTGTGACATGCATGAGCTATCACTTAAAATTTCTCTATTTATAGTCTAATTGTACATTATaagttaataactaataaattGTACTTGTTTTCTAACTAACAATATAGTAACTGCAATAAATGTgtttctcactgttgattttaacaGAATAACTCAAATTGACTAATtagactttattgtaaagtgttaccagcggTATTTTATAATCCATTTgcaattaaatttttaaacatttgtataACATGTTTCGATACACAAAGTAGTTTTATACCTGTGTTGAATATTGTGATCTTATTACTGCATATCCTGATCAAAGCTTTAACAAGTAATTGCAGCTAGAAAAGTTAACGTCATCATAAGCTTGATATTAGCTATTGCTCTGTTACAGTAATTGTCAATGTGGACTCTAGCATGTCTACATGTTCTGTCTAGAGACTGGATTCTGAGAGCAAGATCCTGTGAAGTGTCCATCAAAGCTGAAGAGTAGAACTGGGTGTAAGTTTGAAATGCAACAGAATGTGTGTATCTGTCTGCCTAAGTATTGCTCTGACTGTGATTTTGGTGTCACATGTAGGTTCAGCAACTGTTCTGAGACCGAGTAAAAATGTCATGAACCGGAACATATTTATCTTGTATTGTTTGTGTTTAATTCTGCACAATATTccaggaaaatatattttactacCACAACAATTAACCCAGCATGTGATATTATTCAAACTGTAGATTTCATCTGTTATTCATCACTGTATATCTCTTTATAGACGTGCCCGTTTTaatgttcagattttttaaaatgtttgtacagATTCAGGCTGTCAGccagacagaaaatattaaactaaatgaTCATTTCAGTGTAAGCCATGAATGACAGTCTTTGCTTGTAACAGAACTGTGGATGTGTGGATATGGGCAGTTGTAAAATGATGAGTGGTAGGGaatgtgtatgtatttacattAGATACTACTCTGCACATTACTGTGCATTCAtaaaacatgacaataattcTTGGTCTGTTGTAAGTTTTTAGTTGTTAGGATCATACAAAATCATATTCTCCTCCCTCAGATGCTGTGAAGTGATGGAGTCCAGATGCTACAGGCACAGAAAAAGATGCAGCAATGGAGGAACACAGTGAGCACCTTCCAGGAAGAGCTGGAGGATAGTAGAAATAAAGactctaaaataaaattttacttgtGTTGTCCATATTTCTgttttgtaggttttttttttcttattagatGTGTCTGTTTGACTGTGATGTAAATCTGTGActatatgaacaataaataatttgCTTAATTGTAACACTATTGCATCctcaaataatgtattaattatgaTTTACAGGTGATTACAATGTCATAAAGTCGTTCAGGTATAACTGGACCGAAATCGGACCTGATTGCATTTCAATGCTTTAAATAATAAGTTTTTAACGCGTACGCGTTTTAAAAACAAACCTGAACATGGACCAAACGTCCAGAACATGATAAATTTCGACGTGCAGGAACCGTGTAGAAAAGACGTGCGATTCACGGCCAGATGGCGAAAAAGACCTCGGTTGCATTTTAATTTTGGTACTACTTTTCAACTACGCGACGTGAattgtttaacacaaaacaaaaaaaagtgtccaGCACCAAATCCTCCATAGATCAATAAGATTTAAACAGAGCTTTATATAATAAGTCAACTCCactgataatgataatattttagcGATTATATTTTATCTCAAAGAAGAATTTTACTAATTTACAAGAGAGGCATAAAAAGGGAAggacattattaattattactgttattgttttattattcagatGACCAATTTCTGAATAGTGAGGTTATTTGTGCCtaccagtttgttatttgtccaataaatcataatacattttttctttctcttgtgGACTGATAATTTATGGACTATTTTAGCCCAACCCTTCATGTTTGTTATTCAATCTTTTATGTTTGAAACACTAATGTCCACTTATTATTGACTGTGATAAACAACTTTAATACGTTTATATGCTTTGGTAAAATATCACCTCACTGAtggtttttttaatattttttattattgacttCAATAACAAAGATACAAAATCCAATTTTATACAAAAAACAGTGATATTAACAGATca

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0060897 neural plate regionalization biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0048785 hatching gland development biological_process
GO:0035295 tube development biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0010468 regulation of gene expression biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0016493 C-C chemokine receptor activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0004950 chemokine receptor activity molecular_function
GO:0019956 chemokine binding molecular_function
GO:0019957 C-C chemokine binding molecular_function
GO:0001637 G protein-coupled chemoattractant receptor activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117451

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047617 False 925 lncRNA 0.45 2 16174902 16179226
TCONS_00049035 False 422 lncRNA 0.41 2 16178718 16185024
TCONS_00047618 True 2785 lncRNA 0.34 2 16178718 16185861

Neighbor

gene id symbol gene type direction distance location
XLOC_023986 far1 coding upstream 45224 16079913 ~ 16129678 (+)
XLOC_023985 NA coding upstream 99086 16066877 ~ 16075816 (+)
XLOC_023984 sb:cb470 coding upstream 129131 16043246 ~ 16045771 (+)
XLOC_023983 ppfibp2b coding upstream 131961 15933411 ~ 16042941 (+)
XLOC_023982 syt9b coding upstream 268999 15841670 ~ 15905903 (+)
XLOC_023988 CR759887.2 coding downstream 483 16186344 ~ 16192102 (+)
XLOC_023989 mical2b coding downstream 8589 16194450 ~ 16309747 (+)
XLOC_023990 parvaa coding downstream 126397 16312258 ~ 16345430 (+)
XLOC_023991 tead1a coding downstream 170222 16356083 ~ 16431599 (+)
XLOC_023992 CR376785.1 coding downstream 330293 16516154 ~ 16516562 (+)
XLOC_023973 CR762411.1 misc upstream 956793 15217824 ~ 15218109 (+)
XLOC_023980 NA non-coding upstream 564907 15540766 ~ 15609995 (+)
XLOC_023979 BX323543.4 non-coding upstream 684235 15490212 ~ 15490667 (+)
XLOC_023978 BX323543.2 non-coding upstream 685258 15487494 ~ 15489644 (+)
XLOC_023977 NA non-coding upstream 688122 15484273 ~ 15486780 (+)
XLOC_023997 BX004976.1 non-coding downstream 585930 16771791 ~ 16771908 (+)
XLOC_023998 NA non-coding downstream 644023 16829884 ~ 16836949 (+)
XLOC_024002 NA non-coding downstream 772311 16958172 ~ 16960501 (+)

Expression


Co-expression Network