LOC118936669


Basic Information

Item Value
gene id LOC118936669
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 97679917 ~ 97796621 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981815.1
GGACTGTTTTCGCTAAACCCCTTTACCTGGACGGGAGAACATATTCAGGAAAAACACACATTGCTCAATTTCACACGTTGGTCTCCAGAACAGGGCATGTTGTATCCAGAGTTATACAGGCAGCAGCTGAAGTAGGATTAGCCCAGTCTGGAGTGGATTcaacagccagccagcctgccagccagccagccagccagccctgcCTGAGGTGGGAGAGCAGAGGGACTACAACACTAGCTCAGCTCCAACGTGGTCGTATTGGGgacTCTGAATCTCTGGACAGTTGTATCCAGAGCACCCTCTCAGCCCTCTACCCTCCGTTTGATGCCACAGCCTCCACAGTGCTGTGTCAGGTTTTTGATGTGGTGGAGACCAGCTACAGAGGAGACGGATTAAGATACCTTATAGACTTCCTGGTCCCTGCCAAACACATCCTGCAGACCATCCAGCAACATGCCTGTTTCCCGTACTGCGGCCTGTTATTCCGGCACCAGGGCTGGCCTCTGTGTCTCCACGACAAGGTGATCATCCAGCTCTCTCCTCTGGACCCACGTGTCCTCCGCCCCGGGGACTTCTACCTACAGGTGGCAtcgccctctgtctcccccagcTCCTCCTCCACCAACACCCCCAGcCCACCCTGTCTCATCCTGCGCTGTCTGGCCCCCAGTGGGCAGCATGTAGAGGAGGTAAAGTTACCAGAGCTAGCCTACACCTCCCTGTTCACCATGGCTTGGCTCCACTCAGTCAACAGGGAACGGAGTGGAGCAGGAACGGAGACAGGGTCTGGGACAGGGTCGGAGACAGGGTCTGGGACAGGGTCTGGGACAGGGTCGGGGACAGGGTCGGGGAGGACACTGTCCCACTGCCTCCTTTCTGCAGAGAACGACATCTTCAGAGTACCCTGGGAGGATGTAGTACACCCTCAGTTCATTAACAGACCCACGGCTATGGTGGCTGCACCTATCAGAGTCCCTACCAAGGGAGAAGGGGACGGGGGGAGGGAACAGGACGTCTTCAAGCCTTCGGATAGGGCCAGATGCATTTTGATTGACACATCAAAGGCCCAGTGTGGAGAGAGTACGGAAGTGAAGCTCCTCCCACGGTTGAGCCAGCCTATCGAGACCAGGGACGATGGGAAAGGTTTTGACATCGCAGCAGAAGAGGACTCGGACGCTGAGGGAGAGTATGTTGAACTGGAAGAGATCTCTCTACCGCGCTTCTCTCCTCAGAAAGGATCCTTAACACAGTCTGTTAGTCTGAACTACAGGAACCTGCATAAACCCTGGACTACAGCCCGACACCCCCCCAAAGCAACCCCCTCCCAGCCCCTTCATGCCCCGGTGAAAAGCAGCACTTTCTCCCAGTCCATGGTGTGTTCCAGACTCATCGAGGAATACCTGAACAACGACGTGTTTTCCCCTGTCATCCTCACCCCAACGGCCCCCACCTCCCCAACGGCCCCCACCTCCCCTACGGCCCCCACCTCCCCAACGGCCCCCACCTCCCCAACGGCCCCCACCTCCCCTACGGCCCCCACCTCCCCTACGGCCCCCACCTCCCCTACGGTCCCCACCTCCCCTATGGCCCCCACCTCCCCTACGGCCCCCATGGGCCCCACCTCCCCTACGGCCCCCACCTCCCCTACGGCCTCCATGGGCCCCATGGCCCCCACCTCCCCTACGGCCCCCACCTCCCCTACGGCCCCCATGGGCCCCACCTCCCCTACGGCCTCCATGGGCCCCATGGCCCCCACCTCCCCTACGGCCCCCACCTCCCCTACGGCCCCCACCTCCCCTACGGCCAGAGAGGGGGTCAGCGGTGAGGGGACAGCGTCAGACCGTACAGAAGACTGA
>TU640637
GGTTTGGAAGGAGGTCGAACAGCAGAGAGACTCATTCACTGAGGAATACTGAGGACAATGATCCCAGGATACACTACTACAGAGGACATACTGCATACACTATGgacTCTGAATCTCTGGACAGTTGTATCCAGAGCACCCTCTCAGCCCTCTACCCTCCGTTTGATGCCACAGCCTCCACAGTGCTGTGTCAGGTTTTTGATGTGGTGGAGACCAGCTACAGAGGAGACGGATTAAGATACCTTATAGACTTCCTGGTCCCTGCCAAACACATCCTGCAGACCATCCAGCAACATGCCTGTTTCCCGTACTGCGGCCTGTTATTCCGGCACCAGGGCTGGCCTCTGTGTCTCCACGACAAGGTGATCATCCAGCTCTCTCCTCTGGACCCACGTGTCCTCCGCCCCGGGGACTTCTACCTACAGGTGGCAtcgccctctgtctcccccagcTCCTCCTCCACCAACACCCCCAGcCCACCCTGTCTCATCCTGCGCTGTCTGGCCCCCAGTGGGCAGCATGTAGAGGAGGTAAAGTTACCAGAGCTAGCCTACACCTCCCTGTTCACCATGGCTTGGCTCCACTCAGTCAACAGGGAACGGAGTGGAGCAGGAACGGAGACAGGGTCTGGGACAGGGTCGGAGACAGGGTCTGGGACAGGGTCTGGGACAGGGTCGGGGACAGGGTCGGGGAGGACACTGTCCCACTGCCTCCTTTCTGCAGAGAACGACATCTTCAGAGTACCCTGGGAGGATGTAGTACACCCTCAGTTCATTAACAGACCCACGGCTATGGTGGCTGCACCTATCAGA

Function

NR:

description
rho guanine nucleotide exchange factor 40-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981815.1 False 1856 mRNA 0.60 8 97679917 97796621
TU640637 True 812 TUCP 0.57 6 97742152 97795626
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110513174 LOC106588022 coding upstream 9626 97536534 ~ 97670291 (+)
LOC110516620 LOC106562854 coding upstream 150013 97369711 ~ 97529904 (+)
LOC118965002 NA coding upstream 327057 97350492 ~ 97353435 (+)
LOC110507008 LOC106588037 coding upstream 665649 96997013 ~ 97014268 (+)
LOC110514610 LOC106591035 coding upstream 1288019 96323229 ~ 96392558 (+)
plekhg4 LOC106594058 coding downstream 1038 97797659 ~ 97943775 (+)
LOC118965004 NA coding downstream 147635 97944256 ~ 97947528 (+)
LOC118965006 NA coding downstream 407750 98204371 ~ 98206233 (+)
hsd11b2 LOC100135822 coding downstream 639936 98436557 ~ 98488276 (+)
LOC118965093 agrp1 coding downstream 774085 98570706 ~ 98575061 (+)
G563412 NA non-coding upstream 6866 97607635 ~ 97673051 (+)
G563483 NA non-coding upstream 56293 97623185 ~ 97623624 (+)
G563477 NA non-coding upstream 68012 97610162 ~ 97611905 (+)
G563474 NA non-coding upstream 80853 97598173 ~ 97599064 (+)
G563467 NA non-coding upstream 96250 97582997 ~ 97583667 (+)
G563544 NA non-coding downstream 3154 97799775 ~ 97801279 (+)
G563546 NA non-coding downstream 7138 97803759 ~ 97804829 (+)
G563549 NA non-coding downstream 18585 97815206 ~ 97815620 (+)
G563550 NA non-coding downstream 24964 97821585 ~ 97821831 (+)
G563566 NA non-coding downstream 68997 97865618 ~ 97866473 (+)
G562740 NA other upstream 1192692 96481834 ~ 96487225 (+)
G562719 NA other upstream 1291977 96384736 ~ 96387940 (+)
LOC118965000 LOC106593614 other upstream 1667669 95996318 ~ 96012900 (+)
LOC110510618 bat1 other upstream 1709409 95900120 ~ 95970508 (+)
G563588 NA other downstream 126010 97922631 ~ 97923034 (+)
G563596 NA other downstream 153452 97950073 ~ 97951916 (+)
G564164 NA other downstream 683959 98480580 ~ 98483302 (+)
LOC110526849 vps13c other downstream 1003889 98789830 ~ 99009256 (+)
G564500 NA other downstream 1271286 99067907 ~ 99068597 (+)
G563516 NA non-coding upstream 16991 97723389 ~ 97725161 (+)
G563495 NA non-coding upstream 60066 97681571 ~ 97682086 (+)

Expression

LOC118936669 Expression in all Baseline Samples

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LOC118936669 Expression in each Bioproject

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LOC118936669 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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Co-expression Network