Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110526849 |
| gene name | vps13c |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 98789830 ~ 99009256 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| vps13c | Predicted to be involved in mitochondrion organization; protein retention in Golgi apparatus; and protein targeting to vacuole. Predicted to be extrinsic component of membrane. Human ortholog(s) of this gene implicated in Parkinson's disease 23. Orthologous to human VPS13C (vacuolar protein sorting 13 homolog C). |
| description |
|---|
| vacuolar protein sorting-associated protein 13C |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036981697.1 | False | 13497 | mRNA | 0.53 | 85 | 98789830 | 99009256 |
| XM_036981698.1 | False | 13361 | mRNA | 0.54 | 83 | 98789831 | 99009256 |
| TU642010 | False | 531 | TUCP | 0.50 | 7 | 98800510 | 98824338 |
| TU642007 | False | 815 | TUCP | 0.52 | 8 | 98971142 | 98983410 |
| TU642014 | True | 713 | lncRNA | 0.38 | 3 | 98999430 | 99001221 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110525057 | LOC106592677 | coding | upstream | 1532 | 98786714 ~ 98788594 (+) |
| LOC110516022 | LOC105025469 | coding | upstream | 65450 | 98680420 ~ 98724380 (+) |
| LOC118965094 | NA | coding | upstream | 189526 | 98599247 ~ 98600304 (+) |
| LOC118965093 | agrp1 | coding | upstream | 214769 | 98570706 ~ 98575061 (+) |
| hsd11b2 | LOC100135822 | coding | upstream | 301554 | 98436557 ~ 98488276 (+) |
| LOC110526852 | NA | coding | downstream | 3414 | 99012670 ~ 99013663 (+) |
| LOC118965009 | NA | coding | downstream | 90066 | 99099322 ~ 99102231 (+) |
| LOC110526853 | LOC105021099 | coding | downstream | 232311 | 99241567 ~ 99314530 (+) |
| LOC110514875 | anx2a | coding | downstream | 331491 | 99340747 ~ 99357939 (+) |
| p24b | p24b | coding | downstream | 397197 | 99406453 ~ 99412263 (+) |
| G564409 | NA | non-coding | upstream | 6933 | 98782664 ~ 98782897 (+) |
| G564396 | NA | non-coding | upstream | 33753 | 98755717 ~ 98756077 (+) |
| G564395 | NA | non-coding | upstream | 34385 | 98755188 ~ 98755445 (+) |
| G564367 | NA | non-coding | upstream | 69651 | 98719335 ~ 98720179 (+) |
| G564492 | NA | non-coding | downstream | 6477 | 99015733 ~ 99017159 (+) |
| G564496 | NA | non-coding | downstream | 12181 | 99021437 ~ 99021731 (+) |
| G564505 | NA | non-coding | downstream | 66998 | 99076254 ~ 99080252 (+) |
| G564516 | NA | non-coding | downstream | 91982 | 99101238 ~ 99102038 (+) |
| G564164 | NA | other | upstream | 306528 | 98480580 ~ 98483302 (+) |
| G563596 | NA | other | upstream | 837914 | 97950073 ~ 97951916 (+) |
| G563588 | NA | other | upstream | 866796 | 97922631 ~ 97923034 (+) |
| LOC118936669 | NA | other | upstream | 994204 | 97679917 ~ 97796621 (+) |
| LOC110516620 | LOC106562854 | other | upstream | 1276990 | 97369711 ~ 97529904 (+) |
| G564500 | NA | other | downstream | 58651 | 99067907 ~ 99068597 (+) |
| LOC110498619 | LOC105016647 | other | downstream | 415636 | 99424686 ~ 99469650 (+) |
| G564667 | NA | other | downstream | 527764 | 99537020 ~ 99539242 (+) |
| LOC110513770 | LOC106588105 | other | downstream | 636213 | 99616756 ~ 99663639 (+) |
| G564805 | NA | other | downstream | 799583 | 99808839 ~ 99809932 (+) |
| LOC118965008 | NA | coding | upstream | 180663 | 98816363 ~ 98818767 (+) |
| G564484 | NA | non-coding | upstream | 6210 | 98992986 ~ 98993220 (+) |
| G564483 | NA | non-coding | upstream | 6675 | 98992552 ~ 98992755 (+) |
| G564482 | NA | non-coding | upstream | 8673 | 98990443 ~ 98990757 (+) |
| G564481 | NA | non-coding | upstream | 11597 | 98986998 ~ 98987833 (+) |
| G564478 | NA | non-coding | upstream | 29896 | 98967292 ~ 98969534 (+) |
| G564488 | NA | non-coding | downstream | 3525 | 99004746 ~ 99005318 (+) |
| LOC110526849 | vps13c | other | upstream | 16020 | 98789830 ~ 99009256 (+) |
| G564442 | NA | non-coding | upstream | 560 | 98795642 ~ 98799950 (+) |
| G564441 | NA | non-coding | upstream | 7190 | 98793069 ~ 98793320 (+) |
| G564440 | NA | non-coding | upstream | 7794 | 98792222 ~ 98792716 (+) |
