G463879


Basic Information

Item Value
gene id G463879
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 415456 ~ 415950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU526593
tacagctggattaaagccccacattaaacccttctctactggcagtgacagctggattaaagccccacattaaacccttctctactggcagttacagctggattaaagccccacattaaacccttctctactggcagttaccgctggattaaagccccacattaaacccttctctactggcagttacagctggattaaagccccacattaaacccttctctactggcagttacagctggattaaagccccacattaaacccttctctactggcagttacagctggattaaagccccacattaaacccttctctactggcagtgacagctggattaaagccccacattaaacccttctctactagcagtgacagctggattaaagccccacattaaacccttctctactggcagtgacagctggattaaagccccacattaaacccttgtctactggcagtgacagctggattaaagccccacattaaacccttct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU526593 True 495 lncRNA 0.46 1 415456 415950

Neighbor

gene id symbol gene type direction distance location
LOC118964800 LOC105008036 coding upstream 339592 56073 ~ 77877 (+)
LOC118964799 isca1 coding upstream 366455 43896 ~ 52580 (+)
LOC110525138 rufy3 coding downstream 26766 442716 ~ 549899 (+)
LOC118964801 NA coding downstream 127154 543104 ~ 545704 (+)
LOC110525134 NA coding downstream 135831 551781 ~ 554254 (+)
LOC118964804 NA coding downstream 139214 555164 ~ 555893 (+)
tars1 LOC106585996 coding downstream 148327 564277 ~ 602519 (+)
G463878 NA non-coding upstream 694 414534 ~ 414762 (+)
G463863 NA non-coding upstream 59881 354993 ~ 355575 (+)
G463835 NA non-coding upstream 66908 341774 ~ 348548 (+)
G463861 NA non-coding upstream 75403 339198 ~ 340053 (+)
G463850 NA non-coding upstream 87009 322759 ~ 328447 (+)
G463880 NA non-coding downstream 2162 418112 ~ 418320 (+)
G463881 NA non-coding downstream 5913 421863 ~ 422084 (+)
G463882 NA non-coding downstream 6943 422893 ~ 423101 (+)
G463883 NA non-coding downstream 8489 424439 ~ 424720 (+)
G463884 NA non-coding downstream 11617 427567 ~ 428566 (+)
G463813 NA other upstream 147305 265409 ~ 268151 (+)
G464705 NA other downstream 812755 1228705 ~ 1229099 (+)
G465203 NA other downstream 1646378 2062328 ~ 2064067 (+)
zfr zfr other downstream 1983811 2342330 ~ 2451362 (+)
G465355 NA other downstream 1989169 2405119 ~ 2406090 (+)

Expression


Co-expression Network