Fish Transcriptome and Expression Database

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model fish

XLOC_023997 (BX004976.1)

Basic Information

Item	Value
gene id	XLOC_023997
gene name	BX004976.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007136.7
NCBI id	CM002909.2
chromosome length	37502051
location	16771791 ~ 16771908 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047637
TGCCACAGCCATTTGACCCTGACGGCCAAGAGTGGTTACTCacagaagctaagcagggctgagcctggtcaatcCCTGGATTGAAAACCACATGGGAATACTGGGTTGCTGGTGGTGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000080309

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00047637	True	118	rRNA	0.53	1	16771791	16771908

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_023995	ada2a	coding	upstream	70867	16689633 ~ 16700924 (+)
XLOC_023994	cecr2	coding	upstream	83150	16646113 ~ 16688641 (+)
XLOC_023993	atp6v1e1a	coding	upstream	157879	16601839 ~ 16613912 (+)
XLOC_023992	CR376785.1	coding	upstream	255229	16516154 ~ 16516562 (+)
XLOC_023991	tead1a	coding	upstream	340192	16356083 ~ 16431599 (+)
XLOC_023998	NA	coding	downstream	57976	16829884 ~ 16836949 (+)
XLOC_023999	C25H12orf4	coding	downstream	81478	16853386 ~ 16877107 (+)
XLOC_024000	zgc:77158	coding	downstream	109082	16880990 ~ 16941619 (+)
XLOC_024001	fgf6a	coding	downstream	173440	16945348 ~ 16951890 (+)
XLOC_024002	NA	coding	downstream	186264	16958172 ~ 16960501 (+)
XLOC_023973	CR762411.1	misc	upstream	1553682	15217824 ~ 15218109 (+)
XLOC_023988	CR759887.2	non-coding	upstream	579689	16186344 ~ 16192102 (+)
XLOC_023987	CR759887.4	non-coding	upstream	585930	16174902 ~ 16185861 (+)
XLOC_023985	NA	non-coding	upstream	695975	16066877 ~ 16075816 (+)
XLOC_023980	NA	non-coding	upstream	1161796	15540766 ~ 15609995 (+)
XLOC_024007	NA	non-coding	downstream	731088	17502996 ~ 17510419 (+)
XLOC_024008	NA	non-coding	downstream	756873	17528781 ~ 17535916 (+)
XLOC_024017	BX901919.1	non-coding	downstream	1325839	18097747 ~ 18097861 (+)

Expression

Co-expression Network