XLOC_023998


Basic Information

Item Value
gene id XLOC_023998
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 16829884 ~ 16836949 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049214
CTTATGCCAGCGTGAACAGAATGAGTAACATTATCTATCAAGGTCAGCCGTCTGGGACAGGCCTCACACGGGCTAATCCTTATCACATGCCCAAATACACAAACCCATATGCATGCACATAGAGGATGGGGCAAGATGGCAGTGATAACATTTATTCATGTTTGAATTACAAGTGCAGCTGACATCTAATTACTCTGAGAAGCTCTGCTTTTGTTGCCAGGGATTTCATTTTGGCTTTGACCTAGACTTCGAATGTGCTGAATCTTTGAGCACAGATGCCCTCGTAGATTGTCTAGGCTAAGGATTGTGCCAAAATGACCCCATGTTTCTGAGCAAAATCAGGGATGCTTCTTCTGACTgggcagcagtctcaggacaGAACCCCAGTCTTCTCTCTCCTCCGGGGGGATCtcaaggtgttcccaggccagccgagacaCATAGTCCCTCAAGTGTGTCCtaggtcttccctgaggcctcctcccggttgGACATGCcaggaacacctccctagATTCTGCCCTCGGACCCATTTTTACCTTAGGCAAGGAAGGAGAAGACTGTTCTGCTGAATCCGTGGagcaaattaaataacaaatccaGTCCTAGTATGGACAGCAGCTACTGCGTGGGCTGTGAAGATGCTGTTTGGGTGCTGTAGAGCTCTAGCTAGTGAGCCTGGCGGCTGGCGCTGACATATCTGGCCCAGACAGGCAAGGAACCTGACGAAAAGGCACTGAGTGATGGAAGCAGGTTGTATAactacaaaaaaacataaaagctGAATATTCTGGGGAACTGTTGACTGTGGCACTTGGAGACTGCACGTGACATCATTCAGAAGACAAGGTGATCTTCCTTTGTCAGAGAAACGGCACAAAATCTTCAGAAACAGTCTGTTCCTGGCCACATATTCAAGGCCAGTTCGGTTTGTTCGAAATGATGCTGTTTAGAACAACTATTAACAGACCTGCATTAACCAAACACAGCTCTTTTTAAAACCACATTAAATCAACGCCATTTAGTTGATGACATAACTAATCCAACCTGTCAAATTTTCATCCCATCATATCATCAAATGATCTGAGCTCCCTTATCTAACATATCCCTACATCACATCACATGGAAATACACACGTTTGGAAAAAGACGCACCTCTGTGACAGCTTATGGTCATGATGACACATCTCAAGACTTAATCAACATGCGATTAATCAACTCTGTCTGCGTGACAACATCTCCGTCACCAGTGTAGTAGAACAGACGATCCCATTATATCATAATCACCTCCATATGATGATGTAACTccaatatttgtttataaacaCGTCTCTGATGATCACAATCTGATGGATTAGATGAGGCATCGACAAGAATAAAGATCGAGTAACAGTCTGTTGCGTAATAACATTCCTTGTATTACATATTGTTGGACAACATGAACAGTATTTGTTTTGTGCTGTTATAATTTGAGAAATTGAGTGTCAACACTGCTGGAGTTTACTCTAACTGAGATAAAGCCTCATTAAGAGACTCTTGAATCACTAAATCCCCAACCAATCCAATTATGCCTTGTTAGGTTGAAGGGGCAACCCAGCTGTCCACAAAGATGTGTCTACTGTAAGCCAAGGGGGTATTATTAGCCCACTGAAACAATTGAAGAGATAACAGACACTGGTCAAAGACAGGGCAACCTACTGTACTGTTACAGTACCTCATATGCACAACAACACTACAGACAGGTGGACAAAAGAATAGATAGGCTGCTGGCATGCCATTTACATAGTTAGGGATGTTCCAGGGGGCACCAGTTGATGCcaaaaaacattcattaataaACTGTCTGTCAATAATTCATGAAGGTGAATTATCACATTGTGTTGGCTTGGAAAAGTGGGTAGGGGTGAAATTTTACAATTTGTGTGTTAACTAAACACaaaccaaacattttaaaaagacattcGGTCATTGCTctttagtaatttattaaattaaactcaACTTACGTACCATTATTGCAGTGCCATAATTACTATGGTATAGCTATGTCACCGCACAACACAAAGTCTGCCTGTCTAACGAGTTGGGTAGGCAACAGAGGTGAGAACCCAAATACAGTTTATTAAGAGATTTGCCAGGTAGACAAAGGTCAAAACAGGGACAGACAGGAGCATAGGTAATCCAAAGCAAGGTCAAAAAGATCGGGACAGACAgtaaaacaaagtaaacaatAAACACAGCACAGGGTAAAAACACAGCAAGTTAAACAAAGAAAACCGTTTATAAGACTCAGCAAAGTATGTGTGAAAGCTTCAGCTTTGTGTTTGCAATCAGTAGTGATCtgcaactggtgtgtgtgaggtgcatgacggGATATGTAGTCCAGTTTGGTGGCAGATGTGTAGTTTGGATGACAGTGAGTGTTCTCTATCAATCTGCAAGAGCTGGTGATCGTGCAACGCAATCTTATGgctattcgtaactttttgatttagtggctaattcgtttgaattcGTACAtcctaattcgtacaatttagtacgtattgcttatcacccaatgatggttgggtttagaggcaGGGTTgtgtgccacacctccttttttaaattgtacattttaatacaactgaacttgtaagaattcgtacgaattagccactaaactgacaaaacgtaaaatacttaagttttcttgTGAAATCAGTCTGGATCGTGACAGCAAGAAATCGAGACATTCGAAAGGTTTATTTTACTAGCGCACATTGTTTGTCTTAAATTGAACAATTAATCAGTGCAAGTTAACCCACTGGGAAAAATGGTTTTGTTAATCTTCAgtcaaaatctgaccatttgcttccccTCTATAATGGCTGTCCTTTTTTGATAATGTCAAGTTGATGGCTTGGGCAAAATACACTTAATACACCGCACACTTAATAAGGTAAACCTGTCcgactgcttgttaatgcaattttct

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049214 True 2979 lncRNA 0.41 4 16829884 16836949

Neighbor

gene id symbol gene type direction distance location
XLOC_023996 BX004976.2 coding upstream 55110 16731802 ~ 16774774 (+)
XLOC_023997 BX004976.1 coding upstream 57976 16771791 ~ 16771908 (+)
XLOC_023995 ada2a coding upstream 128960 16689633 ~ 16700924 (+)
XLOC_023994 cecr2 coding upstream 141243 16646113 ~ 16688641 (+)
XLOC_023993 atp6v1e1a coding upstream 215972 16601839 ~ 16613912 (+)
XLOC_023999 C25H12orf4 coding downstream 16437 16853386 ~ 16877107 (+)
XLOC_024000 zgc:77158 coding downstream 44041 16880990 ~ 16941619 (+)
XLOC_024001 fgf6a coding downstream 108399 16945348 ~ 16951890 (+)
XLOC_024002 NA coding downstream 121223 16958172 ~ 16960501 (+)
XLOC_024003 kdm7ab coding downstream 407583 17244532 ~ 17310301 (+)
XLOC_023973 CR762411.1 misc upstream 1611775 15217824 ~ 15218109 (+)
XLOC_023992 CR376785.1 non-coding upstream 313322 16516154 ~ 16516562 (+)
XLOC_023988 CR759887.2 non-coding upstream 637782 16186344 ~ 16192102 (+)
XLOC_023987 CR759887.4 non-coding upstream 644023 16174902 ~ 16185861 (+)
XLOC_023985 NA non-coding upstream 754068 16066877 ~ 16075816 (+)
XLOC_024007 NA non-coding downstream 666047 17502996 ~ 17510419 (+)
XLOC_024008 NA non-coding downstream 691832 17528781 ~ 17535916 (+)
XLOC_024017 BX901919.1 non-coding downstream 1260798 18097747 ~ 18097861 (+)
XLOC_024018 NA non-coding downstream 1270443 18107392 ~ 18250076 (+)

Expression


Co-expression Network