G464178


Basic Information

Item Value
gene id G464178
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 718217 ~ 725668 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU527003
ccagagacctatccataccctgaccagggtgggtcccttccggttaaaacaaaacctgctgaaccaccccgaaatcctagcccaaacaggactacaagggaccaggcacaggcagcgagtgcccaggtggcttctgatccttccgtgccatcccacacccaaaccagggaggaacggcatgctaagccacaggaacagaagattaccaagccacgaaaacgcctggccaacgaatcactactcggggaccagcacaatcctccactccaatcaaagggcatcaaaaaaatcatcaacgattgggcagctacggaccacaacctccccaccttactaaacactacaccaggagacacccacacccgggaccaaacaaaggaaaccaccggatcctacccatcattacaacctacaactcacccagcctccgaatgactactatcatccagcaaagactccagcacaaacaactactccctctccacacacccatcctggcctccaaacggaacaaaaatctcaaggactccctggtcagcagccacctcacattataaaccagagggacaaattactactcccgggaacctccaggccctataccaccaccacgactggaccattactgaggccttcagtacaacggaggaacgactggacagacactgcacctgcaccttacacaccccacatccaatacaacagatagggggtcattaagaccacaaaaaacagatcttcaaatagcaccatagagttaccatgcccatggactctcaagaaatactttcctttttat

Function

NR:

description
uncharacterized protein LOC110513485

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU527003 True 799 lncRNA 0.51 2 718217 725668

Neighbor

gene id symbol gene type direction distance location
tars1 LOC106585996 coding upstream 115698 564277 ~ 602519 (+)
LOC118964804 NA coding upstream 162324 555164 ~ 555893 (+)
LOC110525134 NA coding upstream 163963 551781 ~ 554254 (+)
LOC110525138 rufy3 coding upstream 168318 442716 ~ 549899 (+)
slc4a4a LOC101484802 coding downstream 49996 775664 ~ 1118589 (+)
LOC118964805 NA coding downstream 271361 997029 ~ 1002288 (+)
LOC110525062 LOC106570947 coding downstream 1276420 2002088 ~ 2105141 (+)
LOC110525063 LOC106570939 coding downstream 1423572 2149240 ~ 2199894 (+)
zfr zfr coding downstream 1632954 2342330 ~ 2451362 (+)
G464157 NA non-coding upstream 71408 646523 ~ 646809 (+)
G464155 NA non-coding upstream 73424 644345 ~ 644793 (+)
G464154 NA non-coding upstream 74936 642888 ~ 643281 (+)
G464138 NA non-coding upstream 102676 615120 ~ 615541 (+)
G464132 NA non-coding upstream 110114 606397 ~ 608103 (+)
G464179 NA non-coding downstream 937 726605 ~ 730966 (+)
G464205 NA non-coding downstream 76300 801968 ~ 802183 (+)
G464071 NA non-coding downstream 105259 830927 ~ 832931 (+)
G464220 NA non-coding downstream 150902 876570 ~ 930924 (+)
G464229 NA non-coding downstream 179243 904911 ~ 917624 (+)
G463813 NA other upstream 450066 265409 ~ 268151 (+)
LOC118964799 isca1 other upstream 665727 43896 ~ 52580 (+)
G464705 NA other downstream 503037 1228705 ~ 1229099 (+)
G465203 NA other downstream 1336660 2062328 ~ 2064067 (+)
G465355 NA other downstream 1679451 2405119 ~ 2406090 (+)
LOC110525071 LOC106585963 other downstream 2079715 2743964 ~ 2866482 (+)

Expression


Co-expression Network