XLOC_023999 (C25H12orf4)


Basic Information

Item Value
gene id XLOC_023999
gene name C25H12orf4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 16853386 ~ 16877107 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047638
CTGACAGCTAACTGTGAAAACAAGTGGAGGCGAAAATGAGGAAAAACAAAGGGAAAACCAATACAATTGAGAAAGAGTTTGTGTTTGAGTTCAAGGCAGGAAAACATCACTGTGTCCTCAAAGTGCCGCTTAAGTTTCCCCTCAAAGAAAATGTCAGTGATCTTCATGGCCGAATCATGCTGCTTCATAGAATCCCCTGTTTCGTGGAAACTgACTTGAAAAACAGACTCGGCAGTTTCATTGAGAGTGAAACATTGGCGGATTATGATCGGGACGCAGAAGCAGCCCTTCAGAAACTCACTTCTGGAGAGGTCGACATCAACAAACTTACAAACTTATGGGCTAAAGCCTATTCTGAGACGACACTGGAACATGCCCGTCCCGAAGAAGCCAGCTGGGATGAGGATTTTGCAAGTGTCTATCATGAACTGATTCACTCTCCAGCCTCCGAGACGCTTCTCAACCTGGAGCATAATTACTTCGTCAGTGTCTCCGAGCTCATCAGCGAAAGAGACATGGAGCTCAAGAAGCTTCAGGAGAGGCAGGCTGTTGAGATGAATAAAGTAATGCAGGAGTTGGGAAAGACCCTGTGTGATCAGGATGTAAATACTGTGGCTGCCCAACACTTCGAAGCACAGCAAGTGCTCGAGAGTAAGTGGGCCAGTGAACTGAAACAAGTCACAGGTATCCAGAAACAAGAGTACCAGGAATGGGTGATGAAACTCCACCGGGACCTGCAGAACCCCAATAACAGCACGATAAACGAGGAGATCAAGGTGCAACCGGGTCAGCTTGGAGAGGCTGGAGAAGCGGCAGATCGACTCTTCGAGGAGCAGCGACAGCTGGAGGAGAGCTTCACCATCCACTTAGGGGCTCAGCTGAAGACCATGCACAATCTCCGTCTGGTGCGATCTGATGTTCTGGACTTCTGCAAGCATCGGCGGCACAGCAGCAGCGGGGTAAAGTTAAGACGACTGCAAACTGCACTTTCACTCTACTCCACATCTCTCTGCGGACTAGTGCTGCTAGTCGACAACAGGGTCAACTCATACAGCGGCATCAAGAGAGACTTTGCAACTGTGTCTCAGGAGTGCACAGATTTCCACTTCCCTCGAGTGGATGAGCAGCTGGAGATCGTCCAGCAGGTGGTGCTGTACGCACGGGCTCAGCGCAACAGCAAACAGAGAGAGCAGCCCGAGAtgccaagaaatggaggaaatgAAGACAAAAATAAGATCCTTGACAGAAATTCCTCCAATATCCTCCAAGgtGAATTCTACATCACTCGCCACTCCAACCTGTCCGAGGTTCATATCGTGTTTCACCTTTGTGTGGATGATAATGTACGTTCAGGGAACATCACAGCCCGAGACCCGGCCATCATGGGTCTGAGGAACATCTTGAAAGTCTGCTGCACCCATGACATCACCACCATCACCATCCCACTGCTGCTGGTACATGACATGTCTGAGGAGATGACTATTCCCTGGTGTCTGAAACGTGCTGAGCTGGTCTTCAAATGTGTGAAAGgtTTTATGATGGAAATGGCCTCGTGGGATGGCGGAATCTCCCGAACTGTTCAGTTTCTTGTTCCACAGAGTATCTCAGAAGAGATGTTTTACCAGCTGAGCAACATGCTTCCTCAGATCTTCAGAGTCTCCTCCACGCTCACACTAACATCCAAACGCTaaacaaaccacaaaaaaaaagtcatgtaacTGGAAATACGAAGCACACCTCATCAATTTAGCTTCCTAATTTCCAGAAAAATCATAAGCTGTTTTGATTGACACACCATAATTCTGATGATTCCACCGACAAATGTTGAGGTTTTCGCTCCTGCCGCATTAGAAACCGGTAATGCCAACACAAGCTGTGTTGTGGTGCTGCATTGCAGTCGACACCTTTCCTCGGCCCCCCAGGTGTCGTGTTTTCTCTCCACagacagcaggtggcgctgtatcCGGTGGCGTTTTACACGTAGTTTGAGGTAACCAAAGCTGCTGATTCCAAATGTCAAACGAAACCATCCTTCCAAGCTTTCTAAGTGATTtagcatgtgtttgtgtattaGGTGCCAGTTGTAAGCCTTGGCATGTGTGCAGTTATATTTGAACTGCGTAATCTTTGGAAAGTGGGGCATTTGAAAACCGTATCGTGTTTTCATTGTAAATCAAACCTGTTTGCgtcatgtttttgaactgtggtaACATTGATTAGGCCAGTAaggaagtttaaaataaataaataaataaataaataaataaatatatatatatatatatatatatatatatatatatatatatatacacacacaaaaaaaatatttttttatgagcATCTACTAACAAAATAAGCATATCAGCTACTTACTGTTAAGTCTTTTGTTGGGTTTTCTCCTAATGAGGATATTAACATATGAAGTAGGGGTTAAAGCATTTGCATCTGTATTAGCCTTTTGTCTGATACTGCTGACATGCTAATTACGTGTTTATTTGCTAAATGTCAATGCTTTGTAAATACAGTGCTCTTCATCAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000060987

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047638 True 2541 mRNA 0.45 14 16853386 16877107

Neighbor

gene id symbol gene type direction distance location
XLOC_023998 NA coding upstream 16437 16829884 ~ 16836949 (+)
XLOC_023996 BX004976.2 coding upstream 78612 16731802 ~ 16774774 (+)
XLOC_023997 BX004976.1 coding upstream 81478 16771791 ~ 16771908 (+)
XLOC_023995 ada2a coding upstream 152462 16689633 ~ 16700924 (+)
XLOC_023994 cecr2 coding upstream 164745 16646113 ~ 16688641 (+)
XLOC_024000 zgc:77158 coding downstream 3883 16880990 ~ 16941619 (+)
XLOC_024001 fgf6a coding downstream 68241 16945348 ~ 16951890 (+)
XLOC_024002 NA coding downstream 81065 16958172 ~ 16960501 (+)
XLOC_024003 kdm7ab coding downstream 367425 17244532 ~ 17310301 (+)
XLOC_024004 cnot1 coding downstream 436461 17313568 ~ 17346929 (+)
XLOC_023973 CR762411.1 misc upstream 1635277 15217824 ~ 15218109 (+)
XLOC_023992 CR376785.1 non-coding upstream 336824 16516154 ~ 16516562 (+)
XLOC_023988 CR759887.2 non-coding upstream 661284 16186344 ~ 16192102 (+)
XLOC_023987 CR759887.4 non-coding upstream 667525 16174902 ~ 16185861 (+)
XLOC_024007 NA non-coding downstream 625889 17502996 ~ 17510419 (+)
XLOC_024008 NA non-coding downstream 651674 17528781 ~ 17535916 (+)
XLOC_024017 BX901919.1 non-coding downstream 1220640 18097747 ~ 18097861 (+)
XLOC_024018 NA non-coding downstream 1230285 18107392 ~ 18250076 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000115_02475865_02486717 C8H12ORF4, CUNH12ORF4 coding CI01000115 null 2475865 ~ 2486717 (+)