XLOC_024003 (kdm7ab)


Basic Information

Item Value
gene id XLOC_024003
gene name kdm7ab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 17244532 ~ 17310301 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047644
CCGCCCAGCCCGAGCTCAGGCTGCCTGCGTTGTTTGGGGACAGTCCGAAGATGGCGACGGCCCAGCTGTACTGCGTCTGCCGGCAGCCGTACGACGTGAGCCGGTTTATGATAGAATGCGACATTTGTAAGGACTGGTTTCACGGCAGCTGTGTCGAGGTTGAAGAGCACTATGCTGTGGACATTGACGTCTACCACTGTCCCAACTGTGATGTCCACCACGGACCCTCTCTCAtgaagaaacggaGGAATTGGCACAGACATGACTACACCGAGCCAGATGACGGCAGTAAGCCAGTGCAGGCTGGCACCTCAGTTTTTGTTAGGGAGCTGCAGGCCAGGACCTTCCCCAGTGGAGATGAGATCTTGCAGCCAATGCATGGCGGTCAGGTCACCCAGAGATATCTGGAGCGGCATGGCTTCCGCTATCCCATCATTGTATCCAAAAGGGAAGAACTTGGTCTCCGGTTACCTCCGCCGGATTTCTCCATCAAGGATGTCGAGCGTTATGTTGGAGGTGACAAAGTAATCGATGTCATTGATGTGGCCAGGCAGGCGGACAGCAAGATGAAACTGAAAGCGTTTGTCAAGTATTATTACAGCCCTCAGCGGCCCAAAGTCTTGAACGTCATCAGTCTGGAGTTTTCAGACACCAAGATGGCAGAGTTGGTGGTCGTCCCTGATATCGCCCAGAAAATGTCTTGGGTGGAGAACTACTGGCCTGATGACTCTTACTTTCCCAAGCCCTTTGTGCAGAAGTATTGTTTAATGGGCGTCAAGGACAGCTATACAGACTTCCATATTGATTTCGGGGGCACGTCTGTGTGGTACCATGTATTGTGGGGGgagaagattttttatttaataaagccGACCCCAGCTAATCTTGCACTATACGAGGAGTGGAGCTCATCCCCGAACCAGAGTGAGGTGTTCTTCGGGGAGAAAGTGGACAAGTGCTACAAATGTGTCGTGCGGCAGGGAACAACACTTCTGATTCCAACAGgatggatccatgcagTTCTCACCTCTCAGGATTGCATGGCTTTCGGAGGAAACTTCCTCCACAACCTCAACATTGGCATGCAGCTCAGGTGTTATGAGATGGAGCGGCGTCTGAAGACTCCAGACCTCTTTAAGTTCCCTTATTTCGAGGCCATCTGCTGGTACGTGGCGAAGAATCTGCTGGAGACTCTTAAAGAATCTCGAGAGGAAAACTGCCTGCCTCCAGAATACCTGATCAAGGGAGTCAAAGCGTTGATAACTGCACTGAGGAACTGGCTAAAAAGAGAGGTCACCGAGCCAGCCAGCGAGGTCCCAGACCATATCAGACCCAACCATCTCATTAAAATGCTCACCAAGGAAATCCAGTACCTTGAGGAGTACCAGAACGGGAACTGTGGAAACAAGCCAATGAAACTTCAAGAAAGCTCCATTTGTCCTTCCACGAGGTCTGCACACGAGCGAGGGTCTCATGCACGCAAGACCGCCAGACGCCTTCGTggccaccaccatcatcatcatcgccaccaccaccatcatcaccatcatcatcatcataatcaccaACACTCAGACGGCCCTAAAGCTCCCTCACACCTGGATATCTATGAGCAGCACACGCAGGAGGTCTTGAAAAGACTGGAAATGGGTCCTTATGAGGAGGATGCCTCCTTTAACCTGAAAGTCAATGGCAAATTCAATAAGGTTTCGACAGCTTCAGCCGCAGCAGCAGAACGCAGTTTGGAAAATGACCTGCGTCTGGTTCTGTGTAATGGACAAATAGTGAGAGATAACAGGCAGCATGTTACAGAAAAAAGACCAAGGATAAAGGAAGAGGAGGAAGGCCGAGACGTGAAGAGGGACTCACTCAAGATCAAACTGATCCCTAAAGAGGAGGAACAGGAAGTGCACATTCAAGTGAAAGAGGAGGATAAACGTCATCTTGTAGCCAGAGGAGTAAAGGACTTCACAGATATGAGTAAAGAAGAGAGTTCAGATCTCAGGAACAGAGAATCAGTACTTTCAGACATTTCATCAGACTCTGAATCGGATACAGAGTTTACTACACAGAAGAAGAACTGCTCTGAGGAAGAATCCGAGAGTTCTtcagaggaagaggaggatgaaaAGATGAAGAGGGGTGGAGACGACAAAGTTAACACCAAAAGCTGCTCTAGCTTCACTATGGATACACACAAGTCCCGGCGAAGAATTAGCAGTTTTGAAAAATGTCTTAAAAGAGAATCGGTCACCTTGGCCAGTGCTGAAGAGGATGCTATCCAGGGAATGCTGGCTGTTGCAGGACTGCTGTATTCTCACCCAACAAAAGACCCCAGCAGCTCACAGGAATCCTGGTGGTCTCGGACCAACCACACCTCACCTGAATACAGTAGAAAGAAGGTTGCATCAGGAGAGGAGAATCAGGATTCAGACAGCAATTCTTCACAGGAGGATTTTGAGGCTCGTGAGCACTCAGGAGGAGGATGCCACTCGAGCAAACTCCAGCACAGGATCCAGGAGCACAAGAGCTTCATGGACAGTCagggcagcagcagcagcagtagtagtgaAACGTGGAGCAGTTGCACACAGTCTCCAGCTCACAGGGAAAGCCCAACAATGACCTATCAGTACTGTGAGACCTCACTGTCACCACCACTGCACCCGTCTAAGAGGCCTGCCGCAAACCCTCCACCAGTCAGCAATCAGGCCACCAAAGGTAAACGTCCTAAGAAAGGCATGGCCACAGCGAAGCAGAGACTGGGCAAGATTCTCAAACTCAGCAGACACAAACCCTTCTTTGTGTAGTCCCAATAATGGCAGAAGATTCAGGATGCTAACCATTTTTTAAGGTGACAGGGTATCAAGTGTGTTTGAGTCAACACAGCAggtcaaataagaaaaaaaaagattggtgTTCGCTACCAATAAACCTAAAGCTATGGAATGATCTGTTTTGCTAAGATACATCCAAAGAAACAAGGAAAACATGACTGAAAACATCGCTTTTtaaagttttcaatttttttctcaaCTAAAATGCATCAGGATGTCGACTTAACCAAGTGATGGACTGATTTCGTAAAGGTGCTTGACTTTGGTCTTCATATTTTGTGATGGCAACCGACTTTCTCGCAAATTAAACGAAAATTTGCACTCACTGCCTCAAGAGTCACCCAGAACtacctgtcaatcaaaatgtcGTCACGTTTTGAGAGAAAGTAAAGTGTATTTTGTACTATCTTGATATATTTTAGGTAGTTTAGGTACATTTTGGTCGTCTGTCGCCATCTAGTGGGCTCATTGTTCACACCAGGacaatttctttaatttattccAATGTTTTGGTGCTGTTATTAAATGACGTATTTATTACTGATGAAAGAATTTATTCTGTTGTTCATTCGGGGTCTGTTTCGAAACGCATTTAGATGTTTGTGCACAATATGTCATCCGTATCTGTATTGCGTTGTGGGTAAGAACAAAatgtgttgtgtaaaaaaaagcCAATGTTTAATCAAAATACCTGGCCAACATTTTTGTTACCTCAAGGtgatttttttccttaaaaaaaaaaaagaaaagaaaagaaacaaattgtGATTCTGAATTTTAATCTGGTTTTTGTACTAGATCTGGTTTCTGAATCGCTGCCTCTGTGAATTGAAAGCATTGAAACACTGTTTTAACCTGGTGCTGTGTATAGCATAAgaattttttaacctttttttttttttacatttgaaatgtaTTTGGCTACTCATCTTttaacaaagaattaaaaaatagagtatttatttttttaaaagaaaaaaaaaatccccgcAATTTTACCAACAGCGTGTATTAAAATATGGCGTTTTGTAAGATATACGTGTGTGAGATTTGGAGGTAGTTTActcagttttgtttttgtatgtgtgaaagacCTCAGGTAATTGTTTGAGCTCAAGGTTTTGGATTCCCTTTGATGAATGCCAAATATTTTAATCATAGAAGTCAGGTTTTGTGATATCCAGGCGgcgaaataaatagaaaaaacattaaaaaaacaacacttatTATTGAATATCCCTACTTTTCTCATTTACAGCATGATCTACAGAGCTTTTCAGGCAATAACGCACATTCCAGAAGCTTCCAGGaactgattttaatacaaatCCAGCAGCTCAGGGCTCCCATACAGACTGTTTTTCTGACTGACAGGATTTTTCTCTGAAGGGCTTCAGTCTAAAGGTGTTTGGAATTGaatacagtatttttactgtATGCCATCTTTTATGGCTTTTTATGATGGTTTGTTTCATACCACAATGCCATTAATGTAGCACCTAATGTTGTTGCCCTTTTTAATGATGGTGCTATTTGTTTAAGCAGGATTTGAGCCAAAGTGCATGTGTATTTCAGGCAGAAGTTTGATTTCGATGTGCTCTCTTTAAGGAATTGGATTGTTTTTGGTCTATGAATTACGCTGCACTGCACTCAACTCTTCCTGCATTCGTTGTTACACTacactgtttttgttttcttcaaCACGGCAAGTATCTAAATGTGCTCAATTGAAACATTGCTGGCCTGCAGGCAGGGTTTGTACCATGCAGTacttgtacagtatttatttggCATTCTCGCTTGTGTTTTCCATTTTCCGGTCTTGCAATCAATTACGTGTTTGTAAATGGTGTGTCCTTCCATTTTTCACTGCATTcagctgtttttaaatttttatatggtTGTATGATTTGTTGAACATTTTTGTGACGCTGTAATCCACGGCTTAAGCTATATAAATTGGGATTTTCAGTTGTATAATGTGGCCTGTACATAATAAAAGTTCTACGAGTGAA
>TCONS_00047645
AGTCCGAAGATGGCGACGGCCCAGCTGTACTGCGTCTGCCGGCAGCCGTACGACGTGAGCCGGTTTATGATAGAATGCGACATTTGTAAGGACTGGTTTCACGGCAGATTACTCAGATACGAGTAGGAGTCCACCTTTCTCCCAGATTTGAGGAGAAAGCCGCTTACTGTGTCATCCTGCAGTGGGTCAGGAACTGAGGAAGTGTGATGTAATGATTTTCCTGTGTCGAGGTTGAAGAGCACTATGCTGTGGACATTGACGTCT
>TCONS_00047646
AGTCCGAAGATGGCGACGGCCCAGCTGTACTGCGTCTGCCGGCAGCCGTACGACGTGAGCCGGTTTATGATAGAATGCGACATTTGTAAGGACTGGTTTCACGGCAGCTGTGTCGAGGTTGAAGAGCACTATGCTGTGGACATTGACGTCTACCACTGTCCCAACTGTGATGTCCACCACGGACCCTCTCTCAtgaagaaacggaGGAATTGGCACAGACATGACTACACCGAGCCAGATGACGGCAGTAAGCCAGTGCAGGCTGGCACCTCAGTTTTTGTTAGGGAGCTGCAGGCCAGGACCTTCCCCAGTGGAGATGAGATCTTGCAGCCAATGCATGGCGGTCAGGTCACCCAGAGATATCTGGAGCGGCATGGCTTCCGCTATCCCATCATTGTATCCAAAAGGGAAGAACTTGGTCTCCGGTTACCTCCGCCGGATTTCTCCATCAAGGATGTCGAGCGTTATGTTGGAGGTGACAAAGTAATCGATGTCATTGATGTGGCCAGGCAGGCGGACAGCAAGATGAAACTGAAAGCGTTTGTCAAGTATTATTACAGCCCTCAGCGGCCCAAAGTCTTGAACGTCATCAGTCTGGAGTTTTCAGACACCAAGATGGCAGAGTTGGTGGTCGTCCCTGATATCGCCCAGAAAATGTCTTGGGTGGAGAACTACTGGCCTGATGACTCTTACTTTCCCAAGCCCTTTGTGCAGAAGTATTGTTTAATGGGCGTCAAGGACAGCTATACAGACTTCCATATTGATTTCGGGGGCACGTCTGTGTGGTACCATGTATTGTGGGGGgagaagattttttatttaataaagccGACCCCAGCTAATCTTGCACTATACGAGGAGTGGAGCTCATCCCCGAACCAGAGTGAGGTGTTCTTCGGGGAGAAAGTGGACAAGTGCTACAAATGTGTCGTGCGGCAGGGAACAACACTTCTGATTCCAACAGgatggatccatgcagTTCTCACCTCTCAGGATTGCATGGCTTTCGGAGGAAACTTCCTCCACAACCTCAACATTGGCATGCAGCTCAGGTGTTATGAGATGGAGCGGCGTCTGAAGACTCCAGACCTCTTTAAGTTCCCTTATTTCGAGGCCATCTGCTGGTACGTGGCGAAGAATCTGCTGGAGACTCTTAAAGAATCTCGAGAGGAAAACTGCCTGCCTCCAGAATACCTGATCAAGGGAGTCAAAGCGTTGATAACTGCACTGAGGAACTGGCTAAAAAGAGAGGTGGTCACCGAGCCAGCCAGCGAGGTCCCAGACCATATCAGACCCAACCATCTCATTAAAATGCTCACCAAGGAAATCCAGTACCTTGAGTACCAGAACGGGAACTGTGGAAACAAGCCAATGAAACTTCAAGAAAGCTCCATTTGTCCTTCCACGAGGTCTGCACACGAGCGAGGGTCTCATGCACGCAAGACCGCCAGACGCCTTCACGGCCCTAAAGCTCCCTCACACCTGGATATCTATGAGCAGCACACGCAGGAGGTCTTGAAAAGACTGGAAATGGGTCCTTATGAGGAGGATGCCTCCTTTAACCTGAAAGTCAATGGCAAATTCAATAAGGTTTCGACAGCTTCAGCCGCAGCAGCAGAACGCAGTTTGGAAAATGACCTGCGTCTGGTTCTGTGTAATGGACAAATAGTGAGAGATAACAGGCAGCATGTTACAGAAAAAAGACCAAGGATAAAGGAAGAGGAGGAAGGCCGAGACGTGAAGAGGGACTCACTCAAGATCAAACTGATCCCTAAAGAGGAGGAACAGGAAGTGCACATTCAAGTGAAAGAGGAGGATAAACGTCATCTTGTAGCCAGAGGAGTAAAGGACTTCACAGATATGAGTAAAGAAGAGAGTTCAGATCTCAGGAACAGAGAATCAGTACTTTCAGACATTTCATCAGACTCTGAATCGGATACAGAGTTTACTACACAGAAGAAGAACTGCTCTGAGGAAGAATCCGAGAGTTCTtcagaggaagaggaggatgaaaAGATGAAGAGGGGTGGAGACGACAAAGTTAACACCAAAAGCTGCTCTAGCTTCACTATGGATACACACAAGTCCCGGCGAAGAATTAGCAGTTTTGAAAAATGTCTTAAAAGAGAATCGGTCACCTTGGCCAGTGCTGAAGAGGATGCTATCCAGGGAATGCTGGCTGTTGCAGGACTGCTGTATTCTCACCCAACAAAAGACCCCAGCAGCTCACAGGAATCCTGGTGGTCTCGGACCAACCACACCTCACCTGAATACAGTAGAAAGAAGGTTGCATCAGGAGAGGAGAATCAGGATTCAGACAGCAATTCTTCACAGGAGGATTTTGAGGCTCGTGAGCACTCAGGAGGAGGATGCCACTCGAGCAAACTCCAGCACAGGATCCAGGAGCACAAGAGCTTCATGGACAGTCagggcagcagcagcagcagtagtagtgaAACGTGGAGCAGTTGCACACAGTCTCCAGCTCACAGGGAAAGCCCAACAATGACCTATCAGTACTGTGAGACCTCACTGTCACCACCACTGCACCCGTCTAAGAGGCCTGCCGCAAACCCTCCACCAGTCAGCAATCAGGCCACCAAAGGTAAACGTCCTAAGAAAGGCATGGCCACAGCGAAGCAGAGACTGGGCAAGATTCTCAAACTCAGCAGACACAAACCCTTCTTTGTGTAGTCCCAATAATGGCAGAAGATTCAGGATGCTAACCATTTTTTAAGGTGACAGGGTATCAAGTGTGTTTGAGTCAACACAGCAggtcaaataagaaaaaaaaagattggtgTTCGCTACCAATAAACCTAAAGCTATGGAATGATCTGTTTTGCTAAGATACATCCAAAGAAACAAGGAAAACATGACTGAAAACATCGCTTTTtaaagttttcaatttttttctcaaCTAAAATGCATCAGGATGTCGACTTAACCAAGTGATGGACTGATTTCGTAAAGGTGCTTGACTTTGGTCTTCATATTTTGTGATGGCAACCGACTTTCTCGCAAATTAAACGAAAATTTGCACTCACTGCCTCAAGAGTCACCCAGAACtacctgtcaatcaaaatgtcGTCACGTTTTGAGAGAAAGTAAAGTGTATTTTGTACTATCTTGATATATTTTAGGTAGTTTAGGTACATTTTGGTCGTCTGTCGCCATCTAGTGGGCTCATTGTTCACACCAGGacaatttctttaatttattccAATGTTTTGGTGCTGTTATTAAATGACGTATTTATTACTGATGAAAGAATTTATTCTGTTGTTCATTCGGGGTCTGTTTCGAAACGCATTTAGATGTTTGTGCACAATATGTCATCCGTATCTGTATTGCGTTGTGGGTAAGAACAAAatgtgttgtgtaaaaaaaagcCAATGTTTAATCAAAATACCTGGCCAACATTTTTGTTACCTCAAGGtgatttttttccttaaaa
>TCONS_00047647
TGGATATCTGGTGTCCGTGGTTCTGGGTGGGAACCTGAGGTTTGCTGTGTGGCACAATCCCCTTATTGTCCGGCATATGTGCTGATCTTCCTCAGGTCACCGAGCCAGCCAGCGAGGTCCCAGACCATATCAGACCCAACCATCTCATTAAAATGCTCACCAAGGAAATCCAGTACCTTGAGGAGTACCAGAACGGGAACTGTGGAAACAAGCCAATGAAACTTCAAGAAAGCTCCATTTGTCCTTCCACGAGGTCTGCACACGAGCGAGGGTCTCATGCACGCAAGACCGCCAGACGCCTTCGTggccaccaccatcatcatcatcgccaccaccaccatcatcaccatcatcatcatcataatcaccaACACTCAGACGGCCCTAAAGCTCCCTCACACCTGGATATCTATGAGCAGCACACGCAGGAGGTCTTGAAAAGACTGGAAATGGGTCCTTATGAGGAGGATGCCTCCTTTAACCTGAAAGTCAATGGCAAATTCAATAAGGTTTCGACAGCTTCAGCCGCAGCAGCAGAACGCAGTTTGGAAAATGACCTGCGTCTGGTTCTGTGTAATGGACAAATAGTGAGAGATAACAGGCAGCATGTTACAGAAAAAAGACCAAGGATAAAGGAAGAGGAGGAAGGCCGAGACGTGAAGAGGGACTCACTCAAGATCAAACTGATCCCTAAAGAGGAGGAACAGGAAGTGCACATTCAAGTGAAAGAGGAGGATAAACGTCATCTTGTAGCCAGAGGAGTAAAGGACTTCACAGATATGAGTAAAGAAGAGAGTTCAGATCTCAGGAACAGAGAATCAGTACTTTCAGACATTTCATCAGACTCTGAATCGGATACAGAGTTTACTACACAGAAGAAGAACTGCTCTGAGGAAGAATCCGAGAGTTCTtcagaggaagaggaggatgaaaAGATGAAGAGGGGTGGAGACGACAAAGTTAACACCAAAAGCTGCTCTAGCTTCACTATGGATACACACAAGTCCCGGCGAAGAATTAGCAGTTTTGAAAAATGTCTTAAAAG

Function

symbol description
kdm7ab Enables histone demethylase activity (H3-K27 specific) and histone demethylase activity (H3-K9 specific). Involved in midbrain development. Acts upstream of or within histone H3-K27 demethylation and histone H3-K9 demethylation. Predicted to be located in nucleus. Is expressed in brain; fin; gill; and tail bud. Human ortholog(s) of this gene implicated in melanoma. Orthologous to human KDM7A (lysine demethylase 7A).

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0071557 histone H3-K27 demethylation biological_process
GO:0033169 histone H3-K9 demethylation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0007399 nervous system development biological_process
GO:0030901 midbrain development biological_process
GO:0005634 nucleus cellular_component
GO:0071558 histone demethylase activity (H3-K27 specific) molecular_function
GO:0046872 metal ion binding molecular_function
GO:0035575 histone demethylase activity (H4-K20 specific) molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051213 dioxygenase activity molecular_function
GO:0032454 histone demethylase activity (H3-K9 specific) molecular_function
GO:0051864 histone demethylase activity (H3-K36 specific) molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050309-32 Enables histone demethylase activity (H3-K27 specific) and histone demethylase activity (H3-K9 specific). Involved in midbrain development. Acts upstream of or within histone H3-K27 demethylation and histone H3-K9 demethylation. Predicted to be located in nucleus. Is expressed in brain; fin; gill; and tail bud. Human ortholog(s) of this gene implicated in melanoma. Orthologous to human KDM7A (lysine demethylase 7A).

Ensembl:

ensembl_id ENSDARG00000018559

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047644 False 4852 mRNA 0.44 20 17244532 17310301
TCONS_00047645 False 264 nonsense_mediated_decay 0.51 3 17244573 17270566
TCONS_00047646 False 3457 mRNA 0.47 21 17244573 17309022
TCONS_00047647 True 1045 lncRNA 0.47 6 17295708 17304386

Neighbor

gene id symbol gene type direction distance location
XLOC_024002 NA coding upstream 284031 16958172 ~ 16960501 (+)
XLOC_024001 fgf6a coding upstream 292642 16945348 ~ 16951890 (+)
XLOC_024000 zgc:77158 coding upstream 302913 16880990 ~ 16941619 (+)
XLOC_023999 C25H12orf4 coding upstream 367425 16853386 ~ 16877107 (+)
XLOC_023998 NA coding upstream 407583 16829884 ~ 16836949 (+)
XLOC_024004 cnot1 coding downstream 3267 17313568 ~ 17346929 (+)
XLOC_024005 e2f4 coding downstream 94900 17405201 ~ 17419097 (+)
XLOC_024006 elmo3 coding downstream 113214 17423515 ~ 17471260 (+)
XLOC_024007 NA coding downstream 192695 17502996 ~ 17510419 (+)
XLOC_024008 NA coding downstream 218480 17528781 ~ 17535916 (+)
XLOC_023973 CR762411.1 misc upstream 2026423 15217824 ~ 15218109 (+)
XLOC_023997 BX004976.1 non-coding upstream 472624 16771791 ~ 16771908 (+)
XLOC_023992 CR376785.1 non-coding upstream 727970 16516154 ~ 16516562 (+)
XLOC_023988 CR759887.2 non-coding upstream 1052430 16186344 ~ 16192102 (+)
XLOC_024017 BX901919.1 non-coding downstream 787446 18097747 ~ 18097861 (+)
XLOC_024018 NA non-coding downstream 797091 18107392 ~ 18250076 (+)
XLOC_024019 NA non-coding downstream 999014 18309315 ~ 18314927 (+)

Expression


Co-expression Network