Item | Value |
---|---|
gene id | XLOC_024005 |
gene name | e2f4 |
gene type | coding |
species | zebrafish (Danio rerio) |
category of species | model fish |
Item | Value |
---|---|
chromosome id | NC_007136.7 |
NCBI id | CM002909.2 |
chromosome length | 37502051 |
location | 17405201 ~ 17419097 (+) |
genome version | GRCz11_2017_zebrafish_Genome |
symbol | description |
---|---|
e2f4 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within mitotic cell cycle and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Is expressed in adenohypophysis; head; and trunk. Orthologous to human E2F4 (E2F transcription factor 4). |
id | name | namespace |
---|---|---|
GO:0006355 | regulation of transcription, DNA-templated | biological_process |
GO:0051726 | regulation of cell cycle | biological_process |
GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
GO:0000278 | mitotic cell cycle | biological_process |
GO:0090575 | RNA polymerase II transcription regulator complex | cellular_component |
GO:0005634 | nucleus | cellular_component |
GO:0005667 | transcription regulator complex | cellular_component |
GO:0043565 | sequence-specific DNA binding | molecular_function |
GO:0008134 | transcription factor binding | molecular_function |
GO:0003677 | DNA binding | molecular_function |
GO:0003700 | DNA-binding transcription factor activity | molecular_function |
GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
GO:0046983 | protein dimerization activity | molecular_function |
id | description |
---|---|
ZDB-GENE-040426-2773 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within mitotic cell cycle and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Is expressed in adenohypophysis; head; and trunk. Orthologous to human E2F4 (E2F transcription factor 4). |
ensembl_id | ENSDARG00000101578 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TCONS_00047652 | False | 3359 | mRNA | 0.42 | 10 | 17405201 | 17419097 |
TCONS_00049038 | True | 673 | lncRNA | 0.50 | 4 | 17410117 | 17416453 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
XLOC_024004 | cnot1 | coding | upstream | 58272 | 17313568 ~ 17346929 (+) |
XLOC_024003 | kdm7ab | coding | upstream | 94900 | 17244532 ~ 17310301 (+) |
XLOC_024002 | NA | coding | upstream | 444700 | 16958172 ~ 16960501 (+) |
XLOC_024001 | fgf6a | coding | upstream | 453311 | 16945348 ~ 16951890 (+) |
XLOC_024000 | zgc:77158 | coding | upstream | 463582 | 16880990 ~ 16941619 (+) |
XLOC_024006 | elmo3 | coding | downstream | 4418 | 17423515 ~ 17471260 (+) |
XLOC_024007 | NA | coding | downstream | 83899 | 17502996 ~ 17510419 (+) |
XLOC_024008 | NA | coding | downstream | 109684 | 17528781 ~ 17535916 (+) |
XLOC_024009 | vac14 | coding | downstream | 170809 | 17589906 ~ 17613025 (+) |
XLOC_024010 | galnt18a | coding | downstream | 270468 | 17689565 ~ 17825514 (+) |
XLOC_023973 | CR762411.1 | misc | upstream | 2187092 | 15217824 ~ 15218109 (+) |
XLOC_023998 | NA | non-coding | upstream | 568252 | 16829884 ~ 16836949 (+) |
XLOC_023997 | BX004976.1 | non-coding | upstream | 633293 | 16771791 ~ 16771908 (+) |
XLOC_023992 | CR376785.1 | non-coding | upstream | 888639 | 16516154 ~ 16516562 (+) |
XLOC_023988 | CR759887.2 | non-coding | upstream | 1213099 | 16186344 ~ 16192102 (+) |
XLOC_024017 | BX901919.1 | non-coding | downstream | 678650 | 18097747 ~ 18097861 (+) |
XLOC_024018 | NA | non-coding | downstream | 688295 | 18107392 ~ 18250076 (+) |
XLOC_024019 | NA | non-coding | downstream | 890218 | 18309315 ~ 18314927 (+) |