XLOC_024005 (e2f4)



Basic Information


Item Value
gene id XLOC_024005
gene name e2f4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 17405201 ~ 17419097 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00047652
ACTGCGCCTTCAACGGCTTCAGTCATTCAAGCAGCTCAGCGCTGGTGCTCGTAAGACCTCCTGTTCTGTTAGGCCATCTGGGTTGGGGTGATCCGTGTCCCAAACCGGACCAGACCCCGAACAGCGGTCGCAGCTCTGTCATTTTGTGGACAACTTTCCCGTCCATGGTTCGCAAATCGCCGGTCGTTGACGGGAAGCGAGCGTTTACGCGGCAGGAGCGGTGCTGTCAGCGATATAGCAAGCAGAAAGCGTTATTTATGCAACCATAAACACAACTGCGGGGATTTATTAATACTTCAACATCATCCTGATGGATTTAGAAACCGGAAGAAACGACCTGGGAGCGATGGGAGAGTCGCTGCAGCCGCAGACCCCCAGTCGCCACGAGAAAAGTCTCGGACTGCTCACCACCAAATTTGTGACTCTACTGCAGGAAGCGAAGGACGGAGTGCTGGATCTGAAAGCTGCTGCAGATACTTTGGCTGTAAGGCAGAAACGGCGCATCTATGACATCACCAATGTTTTGGAAGGGATTGGACTCATCGAGAAGAAATCCAAAAACAGCATCCAGTGGAAGGGTGTTGGTCCGGGTTGCAACACGCGCGAGATTGCAGACAAGCTGATAGATCTCAAGTTGGAACTGGAGGATCTGGACAGAAGGGAGCATGAACTGGACCAGCAGAGAGTTTGGGTTCAGCAGAGCATCAAGAATGTGACCGACGACTCGCTAAACAGCCCTCTGGCATATGTAACACATCAAGATCTCTGCAATTGCTTCAAAGGTGACACTCTTCTTGCAATTAGAGCTCCTTCAGGAACACAGTTAGAAGTTCCTGTGCCTGAATCGcatgTCAATGGACAAAAGAAGTACCAGATTCACTTGAAGAGCTCTGCAGGTCCCATCGAGGTGCTCTTGGTGAATAAAGACCCCTCTAGTTCTTCTCCAGTGGTTCTGCCTGTGCCTCCGCCAGACGACATGCTTCAAAACCTGTCCACTCCCGCTTCAACTACCTCTGCTGCTGCACCCACCAAACCCACAGCTAACAGTACACCATCTCCCGCCTCCACCTGCCAGAGTCCCAGCACAACCACCACCAGCAGCACTGCCATCACCACAACCACCGTCCCTCCCAACACAAACTCTGGCCCTCCTGCTGTGGCAGACACAGACATTTCAAGCACCTCCACCCCAGATACAACAGCCAATCCAACACCTTCAACAGACACCCAGCAGCTGCAGTCATCCGCTTCATTGGACAGCTCTTCACTTCCTGATTCCTCAACGCTTTTTGAACCAATCAAAACTGACCCTTCAGATTTGCTAGACTTCCCCAAAGAACTTTCAGAAATGTTTGACCCTAAAGAAATAATGAGTACAGATTTGCTGGAGGAGCTGATGTCATCAGAAGTTTTCTCTCCGCTCCTCCGTCTTTCCCCTCCTCCGGGTGACCATGACTACATCTATAACCTGGATGAAACGGAGGGCCTTTGTGACCTTTTTGACGTTCCCGTTGCCAACCTTTGACCTCCAAACTCACCGTAATATGAGCATAGTGTACTGAaaagactttctttttttttttttttgaaaggagaaaaaaaaagaaagagtggCTCTGTGTCAGATCCATATGTATTATAAGCTGATTCTGTGTGTATATAAAGcttttttatatgtgtatatttactCCAACCCCAAAGTGGCTGGCTGCAAATGAACTTTTCCCTGCTAAATTTTGATCTGATGAAGATCAGACGTCCATACGAAGCATCTTTCTTATTCCGGAACTGATGTTTTTATACTGCTTTTGTATAGAAGTTCACGTTCAACACACAAATAAGGCGAAATTCACCAGCAACTGATTAGTGGTTCGATGCAAATACCagctagatgtgtcattttttCTTGTTAAATGGTCTTCCTGTCGTAAAGTAGCACCTTTTTcctcattttattgtttttattagtgtgtttacTGATCTAGACACAACCGGCATACAGATTATTAATGAAAAGTGAGTAATTACTATGCTTTTGAACAAAGCATTGCTCCGGTGCATAGTTTAAAGCAATCAGCCAATAGGAAAATGTAGTTTTCATCATGCAGAAGtgattgttaaagggatagttcactcaaaaattacattttgcagTTGATTTACTCACAAAAAAGTGATTCTTTGGAAATGTCACAGAAAACATATTCCTGCAGACAAAGCAGAATTAATGCCTATTACtcttaataatacattaaacaactggtctgtgcaagaaactgagtTTTTACAACGTTACTTGCTACGTAAGACTTCAATCTATCATTAAGATCTATGGGTATTAATTTAGTGTTGCCTGTATATAAATGTTTTGACTTTTAAAATGCTGTTagcattacattttcattttataaatgaTTGACAAATTTTTTACTCTATAAAAAAACAAGTAATCTACACCTCAGATAGacaatgagtgagtaaatgaacaccAAATGTTCATTTGTTGGTGTACTGTGTCTTTAAATTACACTAATAACTGCAGAGGTTGCAAAAGAGGCTATAATTGAGATCTTTACAGTGGTGCTATACGACAAAAAGTAAACTAATCTTAGCATCAGTAAAAGAGAAGGAATGTACTTTTAAGTGTTGGATGAACCATTCCTACTATATTTTTGGTGTGTTTGCATATGACTTTAATCTTGTTCAATGCTGCAGAAAGGTCGCACGTAAAGTTCTCTACAAAAATGTTCAATCAGATGCCCTTCGCTATTTTTGTATATGAAAACTCCCGACGTGTTTTCAGTCCATTCTGTcccccctttatatatatatatacacgtgtataGATACTTTAGCAAGTAAGTTGAAGTCTTCATAATGTTTGTATATGAGAATAACTGTCTAAAGAAGGATGTGGGTTTGGGGGGGGAGGAAGTAAAGACGACACGATATGACAAGAAATAAAGTATCAAAACGCGCTGTCCAAACTGAATGTCATGATGTGGGTGGTACTAATAGTTGGCCCTGCTAAAAACAGTAATCATTTCCTGTTCCTATCtgtgaaataatatttttgtgcTCGGGCGCTCTAagtatttagcatttatttttgtACTAGATGTCAGACTGCTCTGTTTTTCAGTAGATGGATAGTCTGCGTTTTTTTCCCCTTTGTTGCTTAATTCAGCAGTGCACTTTACAACAGTTTTGTCACGGAGGTCATGTTCAGCCCTGTGCATTAAATGGCTTGGCGAATCACTCTTACAGCATCCAGGGAATTTCAGTAATGTCATTATACAGCTAAATACCGGAACTGTTCTTTACTGGAATCCAAATGAAATAAAggactttttttgtaa
>TCONS_00049038
ctagcaacaaaattactaagttggcaacattgcaAATGCACAGGTGAGACCAAATCACAGCGCGCTGCTGTCAGCGTTTAATCAGACACTCAATATAAATTCAGACAGACACAAAACCATAACGATTgccattttttgttgttgttgcaaagatagcctagatcagtggtcaccaacaGGCGGATCGAGGTCTGTGTCCAGACTCAGAAGCATCCTTTTCGGACATGGACATACCACAGGTGACACTCTTCTTGCAATTAGAGCTCCTTCAGGAACACAGTTAGAAGTTCCTGTGCCTGAATCGcatgTCAATGGACAAAAGAAGTACCAGATTCACTTGAAGAGCTCTGCAGGTCCCATCGAGGTGCTCTTGGTGAATAAAGACCCCTCTAGTTCTTCTCCAGTGGTTCTGCCTGTGCCTCCGCCAGACGACATGCTTCAAAACCTGTCCACTCCCGCTTCAACTACCTCTGCTGCTGCACCCACCAAACCCACAGCTAACAGTACACCATCTCCCGCCTCCACCTGCCAGAGTCCCAGCACAACCACCACCAGCAGCACTGCCATCACCACAACCACCGTCCCTCCCAACACAAACTCTGGCCCTCCTGCTGTGGCAGACACAGACATTTCAAGCACCTCCACCCCAGATACAACAGCCAATCCAACACCT

Function


symbol description
e2f4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within mitotic cell cycle and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Is expressed in adenohypophysis; head; and trunk. Orthologous to human E2F4 (E2F transcription factor 4).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0090575 RNA polymerase II transcription regulator complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2773 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within mitotic cell cycle and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Is expressed in adenohypophysis; head; and trunk. Orthologous to human E2F4 (E2F transcription factor 4).

Ensembl:

ensembl_id ENSDARG00000101578

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00047652 False 3359 mRNA 0.42 10 17405201 17419097
TCONS_00049038 True 673 lncRNA 0.50 4 17410117 17416453

Neighbor


gene id symbol gene type direction distance location
XLOC_024004 cnot1 coding upstream 58272 17313568 ~ 17346929 (+)
XLOC_024003 kdm7ab coding upstream 94900 17244532 ~ 17310301 (+)
XLOC_024002 NA coding upstream 444700 16958172 ~ 16960501 (+)
XLOC_024001 fgf6a coding upstream 453311 16945348 ~ 16951890 (+)
XLOC_024000 zgc:77158 coding upstream 463582 16880990 ~ 16941619 (+)
XLOC_024006 elmo3 coding downstream 4418 17423515 ~ 17471260 (+)
XLOC_024007 NA coding downstream 83899 17502996 ~ 17510419 (+)
XLOC_024008 NA coding downstream 109684 17528781 ~ 17535916 (+)
XLOC_024009 vac14 coding downstream 170809 17589906 ~ 17613025 (+)
XLOC_024010 galnt18a coding downstream 270468 17689565 ~ 17825514 (+)
XLOC_023973 CR762411.1 misc upstream 2187092 15217824 ~ 15218109 (+)
XLOC_023998 NA non-coding upstream 568252 16829884 ~ 16836949 (+)
XLOC_023997 BX004976.1 non-coding upstream 633293 16771791 ~ 16771908 (+)
XLOC_023992 CR376785.1 non-coding upstream 888639 16516154 ~ 16516562 (+)
XLOC_023988 CR759887.2 non-coding upstream 1213099 16186344 ~ 16192102 (+)
XLOC_024017 BX901919.1 non-coding downstream 678650 18097747 ~ 18097861 (+)
XLOC_024018 NA non-coding downstream 688295 18107392 ~ 18250076 (+)
XLOC_024019 NA non-coding downstream 890218 18309315 ~ 18314927 (+)

Expression



Co-expression Network