G465080



Basic Information


Item Value
gene id G465080
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 1829368 ~ 1830635 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU528156
aaagaaaagaaaagagaaggaaaacaactggagtagagtagagtagactacagtagagtagagtagactacagtagagtagagtagactacagtagagtagagtagactacagtagagtagagtagactacagtagagtagagtagagtagactacagtagagtagagtagagtagagtagactacagtagagtagagtagactacagtagagtagagtagagtagactacagtagagtagagtagactacagtagagtagagtagagtagactacagtagagtagagtagactacagtagagtagagtagactacagtagagtagagtagagtagagtagactacagtagagtagagtagactacagtagagcagagtagactacagtagagcagagtagactacagtaaagtagagtacagtagagtagagtagagtagagcagagtagactacagtagagtagagtacagtagagtagagtagagtagagcagagtagactacagtagactacagtagagtagactacagtagagtagactacagtagagtagactacagtagagtagagtagactacagtagagtagagtagactacagtagagtagagtagagtagaccacagtagagtagagtagagtagagtagagtagactacagtatagtagactacagtatagtagactacattatagtagactacagtatagtagactacagtagagtagagtagagtagactacagtatagtagaccacagtatagtagagtagactacagtagagtagagtagagtagagtagagtagactacagtagagtagactacagtagagtagactacagtagactacagtagagtagactacagtagactacagtagagtagaccacagtagagtagactacagtagagtagagtagactacagtagagtagagtagaccacagtagagtagagtagac

Function


NR:

description
PREDICTED: stress response protein NST1-like isoform X1

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU528156 True 968 lncRNA 0.40 4 1829368 1830635

Neighbor


gene id symbol gene type direction distance location
slc4a4a LOC101484802 coding upstream 710779 775664 ~ 1118589 (+)
LOC118964805 NA coding upstream 827080 997029 ~ 1002288 (+)
tars1 LOC106585996 coding upstream 1226849 564277 ~ 602519 (+)
LOC118964804 NA coding upstream 1273475 555164 ~ 555893 (+)
LOC110525134 NA coding upstream 1275114 551781 ~ 554254 (+)
LOC110525062 LOC106570947 coding downstream 171453 2002088 ~ 2105141 (+)
LOC110525063 LOC106570939 coding downstream 318605 2149240 ~ 2199894 (+)
zfr zfr coding downstream 527987 2342330 ~ 2451362 (+)
mtmr12 mtmr12 coding downstream 579596 2410231 ~ 2446470 (+)
LOC110525158 LOC106570936 coding downstream 635839 2466474 ~ 2489239 (+)
G465077 NA non-coding upstream 2240 1826096 ~ 1827128 (+)
G465056 NA non-coding upstream 65209 1763784 ~ 1764159 (+)
G465026 NA non-coding upstream 143231 1682481 ~ 1686137 (+)
G465025 NA non-coding upstream 143506 1681627 ~ 1685862 (+)
G465027 NA non-coding upstream 144442 1683843 ~ 1684926 (+)
G465086 NA non-coding downstream 11325 1841960 ~ 1865064 (+)
G465119 NA non-coding downstream 93078 1923713 ~ 1924820 (+)
G465145 NA non-coding downstream 128635 1959270 ~ 1961473 (+)
G465202 NA non-coding downstream 229336 2059971 ~ 2060253 (+)
G465222 NA non-coding downstream 283255 2113890 ~ 2116021 (+)
G464705 NA other upstream 600269 1228705 ~ 1229099 (+)
LOC110525138 rufy3 other upstream 1370362 442716 ~ 549899 (+)
G463813 NA other upstream 1561217 265409 ~ 268151 (+)
LOC118964799 isca1 other upstream 1776878 43896 ~ 52580 (+)
G465203 NA other downstream 231693 2062328 ~ 2064067 (+)
G465355 NA other downstream 574484 2405119 ~ 2406090 (+)
LOC110525071 LOC106585963 other downstream 974748 2743964 ~ 2866482 (+)
G465578 NA other downstream 1148207 2978842 ~ 2982425 (+)

Expression



Co-expression Network